Supplementary Figure Legends Supplementary Figure 1 - Schematic summary of experiments We sought to determine how the developmental stage of donor retinal cells might influence the success of transplantation. To do this we used a transgenic mouse in which green fluorescent protein (GFP) expression is driven by the Nrl promoter. Nrl is a rod-specific transcription factor expressed only in post-mitotic rod precursors and adult rod photoreceptors (green). Green fluorescence is therefore developmentally regulated. Dividing retinal progenitor cells were obtained by dissociating Nrl.gfp retinae at embryonic day 11.5 (E11.5), prior to rod genesis. Conversely, postmitotic rod precursors were selected by Nrl dependent green fluorescence from dissociated retinae at postnatal days 2 to 5 (P2-5). The developmental stage of donor cells appeared critical, because although dividing progenitor cells could survive and differentiate into photoreceptor rosettes in the subretinal space, only post-mitotic rod precursors (but not mature rods) had the ability to integrate into the retina and form functional connections with the host. When using the adult rds mouse as a recipient, the transplanted cells were able to grow outer segment discs (red), which are normally absent in this strain due to a genetic deficiency of peripherin-2 (Prph2). In the rhodopsin knockout mouse, there was sufficient rhodopsin expression in the transplanted cells to affect the scotopic pupil response. Supplementary Figure 2. Transplantation occurs via integration not cell fusion. a, Single confocal sections, taken at the same confocal plane, through the inner segment (the widest cytoplasmic part) (arrow) of a GFP-positive cell integrated within a CFPpositive recipient retina. Far right, cross hairs show an absence of CFP fluorescence (red trace) at the location of the GFP-positive inner segment (green trace). b, Integrated cells only have a single nucleus derived from the donor cell. Donor cells were prelabelled with BrdU 24-48 hrs prior to transplantation into a non-labelled host. Image shows an integrated cell with a single nucleus that was BrdU-positive (red), demonstrating that it originated from the donor animal. Scale bar 10 m. Supplementary Figure 3. E11.5 cells express markers of progenitor cells. Confocal images of dissociated E11.5 GFP-positive cells stained for the progenitor markers nestin and Pax6 (both 1:20; Developmental Studies Hybridoma Bank) and Sox2 (1:200; AbCam) (red). Scale bars 10 m. Supplementary Figure 4. E11.5 cells survive and are able to differentiate in the subretinal space of adult host retinas. a, Example of unsorted E11.5 cells from an Nrl.gfp+/+ donor transplanted into the sub-retinal space of adult wildtype hosts, three weeks post-injection. The cells consistently failed to integrate. However, some form rosette-like structures in the sub-retinal space and start to express Nrl, as indicated by GFP fluorescence. b, differentiated cells express the late photoreceptor marker, rhodopsin (red) when arranged as rosettes. Scale bars 10 m. Supplementary Figure 5. Transplantation into the rd mouse. Confocal projection images of P1 GFP-positive cells transplanted into the rd mouse subretinal space. The transplanted cells persist at 3 weeks post-transplantation but adopt variable morphologies due to the collapse of the surrounding host ONL. Scale bar 10 m.