OptIPuter Publications − Maxine, August 5, 2006
JOURNAL ARTICLES
L. Arge, D. Eppstein, M.T. Goodrich, “Skip-Webs: Efficient Distributed Data Structures for Multi-Dimensional
Data Sets,” 24th ACM Symposium on Principles of Distributed Computing (PODC), 2005.
M.J. Atallah, M.T. Goodrich, R. Tamassia, “Indexing Information for Data Forensics,” 3rd Applied Cryptography
and Network Security Conference (ACNS), Lecture Notes in Computer Science 3531, Springer, 2005, pp. 206-221.
Amitabha Bagchi, Amitabh Chaudhary, Michael Goodrich, and Shouhuai Xu, “Constructing Disjoint Paths for
Secure Communication,” 17th Int. Symp. on Distributed Computing (DISC), LNCS 2848, Springer-Verlag, 2003,
pp. 181-195.
M. Barron, T. Moher, and J. Maharry, “RoomBugs: Simulating Insect Infestations in Elementary Classrooms
using Commodity Hardware,” ACM Conference on Human Factors in Computing Systems (CHI 2006) Extended
Abstracts on Human Factors in Computing Systems, Montreal, Canada, April 2006, pp. 315-320.
MOHER-CHI2006-RoomBugs.pdf
Suzana Camargo, Andrew Robertson, Scott Gaffney and Padhraic Smyth, “Cluster analysis of Western North
Pacific tropical cyclone tracks,” Proceedings of the 26th Conference on Hurricanes and Tropical Meteorology,
10A.7, May 3-7, 2004, Miami, FL, pp. 250-251.
Donna Cox, et. al., “Visualization of an F3 Tornado within a Supercell Thunderstorm Simulation” (animation –
1 minute: 15 seconds), SIGGRAPH Video Review, ACM SIGGRAPH, Issue 150, Number 16, 2005, DVD.
http://access.ncsa.uiuc.edu/Releases/06.09.05_NCSA_Visua.html
Donna Cox, et. al., “Visualization of an F3 Tornado within a Supercell Thunderstorm Simulation,” SIGGRAPH
2005 Conference Electronic Art and Animation Catalog, ACM SIGGRAPH, August 2005, pp. 248-249.
Donna Cox, et. al., “Visualization of an F3 Tornado within a Supercell Thunderstorm Simulation,” SIGGRAPH
2005 Electronic Theater Program, published by ACM SIGGRAPH in conjunction with Computer Graphics World,
Number 25, pp. 10.
W. Du, M.T. Goodrich, “Searching for High-Value Rare Events with Uncheatable Grid Computing,” 3rd Applied
Cryptography and Network Security Conference (ACNS), Lecture Notes in Computer Science 3531, Springer, 2005,
pp. 122-137.
A. Falk, T. Faber, E. Coe, A. Kapoor, R. Braden, “Experimental Measurements of the eXplicit Control Protocol,”
Second Annual Workshop on Protocols for Fast, Long-Distance Networks (PFLDnet 2004), Argonne, IL, February
16-17, 2004.
J. Farrell, R.B. Smith, D. Kilb, E. Morikawa, “The Yellowstone GEO GIS Database: Facilitating Integrated
Research and Data Distribution for Yellowstone Geoscience,” GEON Meeting, San Diego, May 2005.
www.geongrid.org/AM05/presentations.php
S. Gaffney, A.W. Robertson, P. Smyth, S. Camargo, M. Ghil, “Probabilistic Clustering of Extra-Tropical Cyclones
using Regression Mixture Models,” Monthly Weather Review, submitted, 2005.
M.T. Goodrich, “Leap-Frog Packet Linking and Diverse Key Distributions for Improved Integrity in Network
Broadcasts,” Proceedings of IEEE Symposium on Security and Privacy (SSP), 2005, pp. 196-207.
M.T. Goodrich, D.S. Hirschberg, “Efficient Parallel Algorithms for Dead Sensor Diagnosis and Multiple Access
Channels,” 18th ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), 2006.
M.T. Goodrich, M. Sirivianos, J. Solis, G. Tsudik, E. Uzun, “Loud And Clear: Human-Verifiable Authentication
Based on Audio,” 26th IEEE International Conference on Distributed Computing Systems (ICDCS), 2006.
M.T. Goodrich, M.J. Nelson, J.Z. Sun, “The Rainbow Skip Graph: A Fault-Tolerant Constant-Degree Distributed
Data Structure,” 16th ACM-SIAM Symposium on Discrete Algorithms (SODA), 2006, pp. 384-393.
M.T. Goodrich, R. Tamassia, D. Yao, “Notarized Federated Identity Management for Web Services,” 20th IFIP WG
Working Conference on Data and Application Security (DBSec), 2006.
Michael Goodrich, Roberto Tamassia, and William H. Winsborough, “Authenticated Dictionaries for Fresh
Attribute Credentials,” 1st Int. Conference on Trust Management (iTrust), LNCS 2692, Springer-Verlag, 2003, pp.
332-347.
Michael Goodrich, Roberto Tamassia, Nikos Triandopoulos, and Robert Cohen, “Authenticated Data Structures for
Graph and Geometric Searching,” Proc. RSA Conference -- Cryptographers” Track (CT-RSA), LNCS 2612,
Springer-Verlag, 2003, 295-313.
R.L. Grossman, Y. Gu, D. Hanley, X. Hong, and G. Rao, “Open DMIX -- Data Integration and Exploration Services
for Data Grids, Data Web and Knowledge Grid Applications,” Proceedings of the IEEE Workshop on Knowledge
Grid and Grid Intelligence (KGGI 03), Halifax, Canada, October 13, 2003.
Robert L. Grossman, “Standards, Services and Platforms for Data Mining: A Quick Overview,” Proceedings of the
KDD 03 DM-SSP Workshop, 2003.
Robert L. Grossman, Dave Hanley, Xinwei Hong and Babu Krishnaswamy, “Using DataSpace to Support LongTerm Stewardship of Remote and Distributed Data,” NASA/IEEE MSST 2004, 12th NASA Goddard/21st IEEE
Conference on Mass Storage Systems and Technologies, 2004.
Robert L. Grossman, Yunhong Gu, Dave Hanley, Xinwei Hong and Babu Krishnaswamy, “Experimental Studies of
Data Transport and Data Access of Earth Science Data over Networks with High Bandwidth Delay Products,” 2005,
(submitted for publication).
Robert L. Grossman, Yunhong Gu, David Handley, Michal Sabala, Joe Mambretti, Alex Szalay, Ani Thakar,
Kazumi Kumazoe, Oie Yuji, Minsun Lee, Yoonjoo Kwon, and Woojin Seok, “Data Mining Middleware for Wide
Area High Performance Networks,” Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October
2006, pp. 940-948.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4K0FMKH-1&_user=10&_handle=V-WAA-W-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=17&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=e80384b7b10c9d5876fb7c31754b39f9
Robert Grossman, Donald Hamelberg, Pavan Kasturi, and Bing Liu, “An Empirical Study of the Universal Chemical
Key Algorithm for Assigning Unique Keys to Chemical Compounds,” Journal of Bioinformatics and Computational
Biology, 2004, to appear.
Yunhong Gu, Robert Grossman, “Supporting Configurable Congestion Control in Data Transport Services,”
ACM/IEEE SC 2005 Conference, Seattle, WA, November 12-18, 2005.
Yunhong Gu, Robert L. Grossman, “Optimizing UDP-Based Protocol Implementations,” Proceedings of the
Third International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet 2005), Lyons, France,
February 3-4, 2005.
GU-PFLDnet2005-v8.pdf
Yunhong Gu, Xinwei Hong, Robert Grossman, “Experiences in Design and Implementation of a High Performance
Transport Protocol,” SC 04, Pittsburgh, PA, November 2004, CD ROM.
Chetan Gupta and Robert L. Grossman, “GenIc: A Single Pass Generalized Incremental Algorithm for Clustering,”
SIAM International Conference on Data Mining (SDM 04), Florida, April 22-24, 2004.
Chetan Gupta, Robert Grossman, “Multiscale Analysis of Data: Clusters, Outliers, and Noise - Preliminary Results,”
Second NASA Data Mining Workshop: Issues and Applications in Earth Sciences, May 22-24, 2006.
J.L. Hardebeck, J. Boatwright, D. Dreger, R. Goel, V. Graizer, K. Hudnut, C. Ji, L. Jones, J. Langbein, J. Lin, E.
Roelofffs, R. Simpson, K. Stark, R. Stein and J.C. Tinsley, “Preliminary Report on the 22 December 2003, M 6.5
San Simeon, California, Earthquake,” Seismological Research Letters (SRL), 75, March/April 2004, pp. 155-172.
Eric He, Xi Wang, Venkat Vishwanath, Jason Leigh, “AR-PIN/PDC: Flexible Advance Reservation of
Intradomain and Interdomain Lightpaths,” IEEE GlobeCom 2006, July 2006.
HE-GlobeCom06.pdf
David A. Hinds, Laura L. Stuve, Geoffrey B. Nilsen, Eran Halperin, Eleazar Eskin, Dennis G. Ballinger, Kelly A.
Frazer, and David R. Cox, “Whole-Genome Patterns of Common DNA Variation in Three Human Populations,”
Science, Volume 307, AAAS, February 18, 2005, pp. 1072-1079
A. Ihler, S. Kirshner, P. Smyth, M. Ghil, A. Robertson, “Graphical Models for Statistical Inference and Data
Assimilation,” Physica D, submitted 2005.
S.F. Jenks, K. Kim, E. Henrich, Y. Li, L. Zheng, M. H. Kim, H.-Y. Youn, K. H. Lee, and D.-M. Seol, “A LinuxBased Implementation of a Middleware Model Supporting Time-Triggered Message-Triggered Objects,”
Proceedings of 8th IEEE International Symposium on Object-oriented Real-time Distributed Computing
(ISORC 2005), Seattle, WA, May 18-20, 2005, pp. 350- 358.
B. Jeong, L. Renambot, R. Jagodic, R. Singh, J. Aguilera, A. Johnson, J. Leigh, “High-Performance Dynamic
Graphics Streaming for Scalable Adaptive Graphics Environment,” SC 2006, Tampa, Florida, November 1117, 2006.
JEONG-SAGE-SC06-final.pdf
B. Jeong, R. Jagodic, L. Renambot, R. Singh, A. Johnson, J. Leigh, “Scalable Graphics Architecture for HighResolution Displays,” Proceedings of IEEE Information Visualization Workshop 2005, Minneapolis, MN, April 2325, 2005.
G.M. Kent, J.M. Babcock, N.W. Driscoll, A.J. Harding, J.A. Dingler, G.G. Seitz, J.V. Gardner, L.A. Mayer, C.R.
Goldman, A.C. Heyvaert, R.C. Richards, R. Karlin, C.W. Morgan, P.T. Gayes, L.A. Owen, “60 k.y. Record of
Extension across the Western Boundary of the Basin and Range Province: Estimate of Slip Rates from Offset
Shoreline Terraces and a Catastrophic Slide Beneath Lake Tahoe,” Geology, Vol. 33, 2005, pp. 365-368.
Debi Kilb and Jeanne L. Hardebeck, “Fault Parameter Constraints Using Relocated Earthquakes: A Validation
of First-Motion Focal-Mechanism Data,” Bulletin of the Seismological Society of America, Vol. 96, No. 3, June
2006, pp. 1140–1158.
KILB-BulletinSeismology06.pdf
D. Kilb (and other E/O Contributors), “Column Spotlight on Education and Public Outreach (EPO),” MARGINS
Newsletter No. 13, Fall 2004, p. 11.
D. Kilb, G.M. Kent, A. Nayak, “Seeing Is Believing: 3D Interactive Visualization Tools that Include the
Juxtaposition Of Multivariate Data” (poster), EarthScope meeting, February 2005.
www.earthscope.org/meetings/assets/es.natl.meeting/abstracts.pdf
D. Kilb, I. Cooper, R. de Groot, W. Schindle, R. Mellors, M. Benthien, “Using 3D Interactive Visualizations in
Teacher Workshops,” American Geophysical Union (AGU), 2004.
D. Kilb, J. Bowen, C. Cruz, J. Eakins, K. Lindquist, V.G. Martynov, A. Nayak, R.L. Newman, J. Otero, G. Prieto
and F.L. Vernon, “Near-Real Time Generation Of 3D Interactive Visualization and Web-Based Information
Pertaining to the September 28, 2004 Mw 6 Parkfield Earthquake,” Seismological Society of America (SSA), April
2005.
S. Kim, P. Smyth, H. Stern, J. Turner, “Parametric response surface models for analysis of multi-site fMRI data,”
Proceedings of the 8th International Conference on Medical Image Computing and Computer-Assisted Intervention
(MICCAI), Palm Springs, CA Springer-Verlag, Part I, Vol. 3749 of Lecture Notes in Computer Science, 2005, pp.
352-359.
K.H. Kim, S. Jenks, L. Smarr, A. Chien, and L.-C. Zheng, “A Framework for Middleware Supporting Real-Time
Wide-Area Distributed Computing,” Proceedings of Tenth IEEE International Workshop on Object-Oriented
Real-Time Dependable Systems (WORDS 2005), Sedona, AZ, February 2-4, 2005, pp. 231-240.
KIM-WideAreaRT.pdf
S. Kim, P. Smyth, H. Stern, “A nonparametric Bayesian approach to detecting spatial activation patterns in fMRI
data,” Proceedings of the 9th International Conference on Medical Image Computing and Computer-Assisted
Intervention (MICCAI), Springer-Verlag, to appear, 2006.
S. Kim, P. Smyth, H. Stern, J. Turner, “Parametric Response Surface Models for Analysis of Multi-Site fMRI Data,”
Proceedings of 8th International Conference on Medical Image Computing and Computer Assisted Intervention
(MICCAI 2005), Lecture Notes in Computer Science, Springer, October 26-29, 2005 (to appear).
Seyoung Kim, Padhraic Smyth and Stefan Luther, “Modeling waveform shapes with random effects segmental
hidden Markov models,” Proceedings of the 20th International Conference on Uncertainty in Artificial Intelligence,
Morgan Kaufmann, 2004.
Yasuhiro Kirihata, Jason Leigh, Chaoyue Xiong and Tadao Murata, “A Sort-Last Rendering System over an Optical
Backplane,” International Conference on Cybernetics and Information Technologies, Systems and Applications:
(CITSA), July 2004.
Sergey Kirshner, Padhraic Smyth and Andrew Robertson, “Conditional Chow-Liu tree structures for modeling
discrete-valued vector time series,” Proceedings of the 20th International Conference on Uncertainty in Artificial
Intelligence, Morgan Kaufmann, 2004.
D. Kondo, M. Taufer, C. Brooks, H. Casanova, and A. Chien, “Characterizing and Evaluating Desktop Grids: An
Empirical Study,” Proceedings of International Parallel and Distributed Processing Symposium (IPDPS 2004), Santa
Fe, New Mexico, April 2004.
Naveen K. Krishnaprasad, Venkatram Vishwanath, Shalini Venkataraman, Arun G. Rao, Luc Renambot, Jason
Leigh, Andrew E. Johnson “JuxtaView: A Tool for Interactive Visualization of Large Imagery on Scalable Tiled
Displays,” IEEE Cluster Computing 2004, Sept. 20-23 2004, San Diego, CA, pp. 411-420.
T. Lavian, D. Hoang, J. Mambretti, S. Figueira, S. Naiksatam, N. Kaushil, I. Monga, R. Durairaj, D. Cutrell, S.
Merrill, H. Cohen, P. Daspit, F. Travostino, “A Platform for Large-Scale Grid Data Service on Dynamic HighPerformance Networks,” 2nd International Workshop on Grid Network Research (GridNets 2005), Boston, MA,
October 6-7, 2005.
J. Leigh, P. Morin, A. Johnson, T.A. DeFanti, M. Brown, D. Sandin, F. Rack, F. Vernon, J. Orcutt, B. Davis, P. van
Keken, L. Smarr, “GeoWall2: A Scalable Display System for the Geosciences,” American Geophysical Union Fall
Meeting, December 2003
Jason Leigh, Luc Renambot, Andrew Johnson, Byungil Jeong, Ratko Jagodic, Nicholas Schwarz, Dmitry Svistula,
Rajvikram Singh, Julieta Aguilera, Xi Wang, Venkatram Vishwanath, Brenda Lopez, Daniel J Sandin, Tom Peterka,
Javier Girado, Robert Kooima, Jinghua Ge, Lance Long, Alan Verlo, Thomas A DeFanti, Maxine Brown, Donna
Cox, Robert Patterson, Patrick Dorn, Paul Wefel, Stuart Levy, Jonas Talandis, Joe Reitzer, Tom Prudhomme, Tom
Coffin, Brian Davis, Paul Wielinga, Bram Stolk, Gee Bum Koo, Jae Youn Kim, Sang Woo Han, Jong Won Kim,
Brian Corrie, Todd Zimmerman, Pierre Boulanger, Manuel Garcia, “The Global Lambda Visualization Facility:
An International Ultra-High-Definition Wide-Area Visualization Collaboratory,” Future Generation Computer
Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 964-971.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4JVT1GD-1&_user=10&_handle=V-WAA-W-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=20&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=be90b7e9e8d6539042b19c15a81becd0
K. Lindquist, R. Newman, A. Nayak, F. Vernon, N. Cooper, “Dynamic Web Expression for Near-real-time Sensor
Networks,” EOS Trans. AGU, 84(46), Fall Meet. Suppl., Abstract ED32C-1205, December 2003.
Xin Liu, Andrew A. Chien, “Realistic Large Scale Online Network Simulation,” Proceedings of the ACM
Conference on High Performance Computing and Networking, SC 2004, Pittsburgh, PA, November 2004, CD
ROM.
Xin Liu, Huaxia Xia, and Andrew Chien, “Validating and Scaling the MicroGrid: A Scientific Instrument for
Grid Dynamics,” Journal of Grid Computing, Volume II, Number 2, pages 141-161.
http://www-csag.ucsd.edu/papers/The_Microgrid_final.pdf
J. Mambretti, “Experimental Optical Grid Networks: Integrating High Performance Infrastructure and Advanced
Photonic Technology with Distributed Control Planes,” Proceedings, ECOC Workshop on Optical Networks for
Grids, Stockholm, Sweden, September 5, 2004.
J. Mambretti, “Intelligent Lightpaths: Data Intensive Applications and Dynamic Waveswitching Networks”
(chapter), Annual Review of Communications, International Engineering Consortium, Vol. 57, 2004, pp. 719-723.
J. Mambretti, “Intelligent Lightpaths: Data Intensive Applications and Dynamic Waveswitching Networks,” Annual
Review of Communications, Vol. 57, International Engineering Consortium, 2004, (accepted)
J. Mambretti, “Preparing Regions and Cities for the 21st Century Economy: Policies for Digital Communications
Infrastructure” (white paper), MacArthur Foundation Policy Project Forum, Development Globalization and
Technology: Strategies to Enhance Regional Competitiveness, Chicago, Illinois, January 2005.
J. Mambretti, “Recent Progress on TransLight, OptIPuter, OMNInet And Future Trends Toward Lambda Grids,”
Proceedings, 8th International Symposium On Contemporary Photonics Technology (CPT2005), Tokyo, Japan,
January 12-14, 2005.
J. Mambretti, “The Digital Communications Grid: Creating A New Architectural Foundation for 21st Century
Digital Communications Based on Intelligent Lightpaths,” Annual Review of Communications, International
Engineering Consortium, 2005, Vol. 58, accepted.
J. Mambretti, “Ultra Performance Dynamic Optical Networks and Control Planes for Next Generation
Applications,” Proceedings of the Mini-Symposium on Optical Data Networking, Grasmere, England, August 2224, 2005
J. Mambretti, “Ultra Performance Dynamic Optical Networks and Control Planes for Next Generation
Applications,” Proceedings, Mini-Symposium on Optical Data Networking, Grasmere, England, August 22-24,
2005, to appear.
J. Mambretti, David Lillethun, John Lange, Jeremy Weinberger, “Optical Dynamic Intelligent Network Services
(ODIN): An Experimental Control Plane Architecture for High-Performance Distributed Environments Based on
Dynamic Lightpath Provisioning,” IEEE Communications Magazine, Special Issue on An Optical Control Plane for
the Grid Community, Vol. 44, No. 3, March 2006, pp. 92-99.
J. Mambretti, J. Chen, F. Yeh, “Distributed Optical Testbed (DOT): A Grid Applications and Optical
Communications Testbed,” 2nd International Workshop on Grid Network Research (GridNets2005), Boston, MA,
October 6-7, 2005, submitted.
Joe Mambretti, “Infrastructure as Platform: Services-Oriented Architecture, Visualization, and 21st Century
Communications,” Reprinted from IEC Annual Review of Communications 2006, “Analysts Corner” IEC
Newsletter, May 2006.
www.iec.org/newsletter/may06_1/analyst_1.html
Joe Mambretti, Jim Chen, Fei Yeh, “Distributed Optical Testbed (DOT): A Grid Applications and Optical
Communications Testbed”, GridNets 2005 (Second International Workshop on Networks for Grid Applications),
Boston, MA, October 6-7, 2005.
Joe Mambretti, Rachel Gold, Fei Yeh, Jim Chen, “AMROEBA: Computational Astrophysics Modeling Enabled
by Dynamic Lambda Switching,” Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October
2006, pp. 949-954.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4JVT1GD-2&_user=10&_handle=V-WAA-W-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=18&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=99bd12d16d7a4975641097d4d0ecd893
Robert E. McGrath, Emily Wu, Andrew Shirk, “D2K Web Service Deployment: Report on Testbed
Experiments,” NCSA Technical Report, February 14, 2006.
http://algdocs.ncsa.uiuc.edu/TR-20060214-1.pdf
Robert E. McGrath, Emily Wu, Andrew Shirk, Doru Marcusiu, “D2K Web Service Testbed Report,” NCSA
Technical Report, February 17, 2006.
http://algdocs.ncsa.uiuc.edu/TR-20060217-1.pdf
Robert E. McGrath, Emily Wu, Doru Marcusiu, Andrew Shirk, “D2K Web Service Deployment: Resource Usage
Accounting,” NCSA Technical Report, Revised May 18, 2006.
http://algdocs.ncsa.uiuc.edu/TR-20060518-1.pdf
Robert E. McGrath, Emily Wu, Doru Marcusiu, Andrew Shirk, Terry Fleury, Von Welch, “D2K Web Service
Deployment: Security Review,” NCSA Technical Report, March 8, 2006.
http://algdocs.ncsa.uiuc.edu/TR-20060308-1.pdf
T. Moher, “Embedded Phenomena: Supporting Science Learning with Classroom-sized Distributed
Simulations,” Proceedings ACM Conference on Human Factors in Computing Systems (CHI 2006), Montreal,
Canada), April 2006, pp. 691-700. (Best Paper award)
MOHER-CHI2006-EmbeddedPhenomena.pdf
T. Moher, S. Hussain, M. Barron, M. Thompson, “RoomQuake: Learning, Self-Concept, and Growth of a
Community of Practice in a Persistent Whole-Classroom Simulation,” Annual Conference of the American
Education Research Association, San Francisco, CA, April 2006.
MOHER-AmerEducResearchAssoc06-Roomquake.pdf
T. Moher, S. Hussain, T. Halter, D. Kilb, “Roomquake: Embedding Dynamic Phenomena within the Physical Space
of an Elementary School Classroom,” ACM Conference on Human Factors in Computing Systems (CHI 2005),
Portland, OR, April 2005, pp. 1665-1668.
MOHER-CHI2005-Roomquake.pdf
T. Moher, S. Hussain, T. Halter, E. Poliakon, “Practicing Seismology in the Fifth-grade Classroom: Technology
in the Service of Developing a Community of Learners,” ISTA Spectrum, Vol. 40, No. 2, Fall 2004, pp. 32-38.
www.ista-il.org/spectrum.htm
T. Moher, Y. Rogers, C. Quintana, R. Joiner, “Co-Present Distributed Simulations of Science Phenomena for K8 Learners: A Technology Designers’ Round-Robin Symposium,” Annual Conference of the American
Education Research Association, April 2006, San Francisco, CA.
MOHER-Symposium-AmerEducResearchAssoc06.pdf
A. Nayak, D. Kilb, “3D Visualization of Recent Sumatra Earthquake,” EOS Transactions, American Geophysical
Union, Vol. 86, No. 14, April 5, 2005, pp. 142.
A. Nayak, F.L. Vernon, G.M. Kent, J. Orcutt, D. Kilb, R.L. Newman, J. Eakins, L. Smarr, T. DeFanti, J. Leigh, L.
Renambot, A. Johnson, “iCluster: Visualizing USArray Data on a Scalable High Resolution Tiled Display
using the OptIPuter,” GEON Meeting, San Diego, May 2005.
www.geongrid.org/AM05/presentations.php
A.M. Nayak, D. Kilb, R. Newman, G. Kent, F.L. Vernon and J. Orcutt, “The Potential Role of the OptIPuter in the
Earthscope Project,” Seismological Society of America 2004 Annual Meeting, Palm Springs, April 14-16 2004.
A.M. Nayak, K. Lindquist, D. Kilb, R. Newman, F. Vernon, “Using 3D Glyph Visualization to Explore Real-time
Seismic Data on Immersive and High-resolution Display Systems,” EOS Trans. AGU, 84(46), Fall Meet. Suppl.,
Abstract ED32C-1208, December, 2003.
Atul Nayak, F. Vernon, G. Kent, J. Orcutt, D. Kilb, R. Newman, J. Eakins, L. Smarr, T. DeFanti, J. Leigh, L.
Renambot, A. Johnson, “iCluster: Visualizing USArray Data on a Scalable High Resolution Tiled Display using the
OptIPuter” (presentation), Geosciences Network (GEON) 3rd Annual Meeting, San Diego, CA, May 5-6, 2005.
Atul Nayak, F. Vernon, G. Kent, J. Orcutt, D. Kilb, R. Newman, L. Smarr, T. DeFanti, J. Leigh, L. Renambot, A.
Johnson, “High Resolution Visualization of USArray Data on a 50 Megapixel Display using OptIPuter
Technologies” (abstract), EOS Transactions of the American Geophysical Union (AGU), Vol. 85, No. 47, Fall
Meeting, Abstract SF13A-0702, San Francisco, CA, December 13-17, 2004.
Atul Nayak, Frank Vernon,Graham Kent, John Orcutt, Debi Kilb, Rob Newman, Larry Smarr, Tom DeFanti, Jason
Leigh, Luc Renambot, Andrew Johnson, “High Resolution Display of USArray Data on a 50 Megapixel Display
using OptIPuter Technologies” (poster), EOS Transactions, American GeoPhysical Union (AGU), Fall meeting
2004, San Francisco CA, December 13-17, 2004.
Harvey B. Newman, Mark H. Ellisman, John A. Orcutt, “Data-intensive e-science frontier research,”
Communications of the ACM, Volume 46, Number 11, November 2003, pp. 68-77.
R.L. Newman, D. Kilb, A. Nayak, G. Kent, “The Role of Research Institutions in Building Visual Content for the
GeoWall,” EOS Trans. AGU, 84(46), Fall Meet. Suppl., Abstract ED31E-06, December 2003.
C. Nishimura, C.L. Johnson, K.D. Schwehr, D. Kilb, A. Nayak, “Visualization Tools Facilitate Geological
Investigations of Mars Exploration Rover (MER) Landing Sites,” IEEE Visualization, 2004, October 10-15, 2004, p.
19.
Alex Olugbile, Huaxia Xia, Xin Liu, Andrew Chien, et. al., “New Grid Scheduling and Rescheduling Methods in the
GrADS Project,” Workshop for Next Generation Software, held in conjunction with the IEEE International Parallel
and Distributed Processing Symposium 2004 (IPDPS 2004), Santa Fe, New Mexico, April 2004.
Tom Peterka, Daniel J. Sandin, Jinghua Ge, Javier Girado, Robert Kooima, Jason Leigh, Andrew Johnson, Marcus
Thiebaux and Thomas A. DeFanti, “Personal Varrier: Autostereoscopic virtual reality display for distributed
scientific visualization,” Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp.
976-983.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4K1G51G-1&_user=10&_handle=V-WAA-W-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=22&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=6697cfa3e79a18c393823def7c6536e5
C. Reif, T. Ireland, J. Hammond, V. Lekic, “Characterizing Deep (> 500 km) Earthquake Regions to Investigate the
Fate of Subducting Slabs,” EOS Transactions, AGU Fall Meeting, Vol. 85, Supplement, Abstract, U41A-0712,
2004.
L. Renambot, B. Jeong, R. Jagodic, A. Johnson, J. Leigh, J. Aguilera, “Collaborative Visualization using HighResolution Tiled Displays,” ACM Conference on Human Factors in Computing Systems (CHI 2006), Montreal,
Canada), April 2006.
L. Renambot, J. Leigh, V. Vishwanath, D. Lee, A. Nayak, N. Schwarz, L. Long, A. Verlo, R. Singh, and F. Dijkstra,
“Interactive Remote Visualization of Large High-Resolution Time-Varying Geophysical and Biological Datasets,”
Proceedings of the IEEE/ACM Supercomputing Conference 2005 (SC2005), November 12-18, 2005.
Luc Renambot, Andrew Johnson and Jason Leigh, “Techniques for Building Cost-Effective Ultra-highresolution Visualization Instruments,” presented at the 2005 NSF CISE/CNS Pervasive Computing Infrastructure
Experience Workshop, hosted by NCSA/UIUC in Urbana-Champaign, IL, July 27, 2005.
RENAMBOT-NSF-CISE-RI-meeting.pdf
Luc Renambot, Arun Rao, Rajvikram Singh, Byungil Jeong, Naveen Krishnaprasad, Venkatram Vishwanath,
Vaidya Chandrasekhar, Nicholas Schwarz, Allan Spale, Charles Zhang, Gideon Goldman, Jason Leigh, Andrew
Johnson, Andrew, “SAGE: the Scalable Adaptive Graphics Environment,” Fourth Annual Workshop on
Advanced Collaborative Environments (WACE 2004), Nice, France, September 23, 2004.
RENAMBOT-WACE2004-SAGE.pdf
A.W. Robertson, S. Kirshner, P. Smyth, S.P. Charles, B. Bates, “Subseasonal-to-Interdecadal Variability of the
Australian Monsoon over North Queensland,” Q.J.R. Meteorological Society, submitted 2005.
Andrew Robertson, Sergey Kirshner and Padhraic Smyth, “Hidden Markov models for modeling daily rainfall
occurrence over Brazil,” Journal of Climate, 2004 (accepted for publication)
Andrew Robertson, Sergey Kirshner, Padhraic Smyth, “Hidden Markov Models for Modeling Daily Rainfall
Occurrence over Brazil,” Journal of Climate, Vol. 17, No. 22, November 2004, pp. 4407-4424.
http://ams.allenpress.com/pdfserv/10.1175/JCLI-3216.1
Nicholas Schwarz, Shalini Venkataraman, Luc Renambot, Naveen Krishnaprasad, Venkatram Vishwanath, Jason
Leigh, Andrew Johnson, Graham Kent, Atul Nayak, “Vol-a-Tile: A Tool for Interactive Exploration of Large
Volumetric Data on Scalable Tiled Displays” (poster), IEEE Visualization 2004 Poster Compendium, October 1015, 2004, CD ROM
Takashi Shimizu, Daisuke Shirai, Hirokazu Takahashi, Takahiro Murooka, Kazuaki Obana, Yoshihide Tonomura,
Takeru Inoue, Takahiro Yamaguchi, Tetsuro Fujii, Naohisa Ohta, Sadayasu Ono, Tomonori Aoyama, Laurin Herr,
Natalie van Osdol, Xi Wang, Maxine Brown, Tom DeFanti, Rollin Feld, Jacob Balser, Steve Morris, Trevor
Henthorn. Greg Dawe, Peter Otto, Larry Smarr, “International Real-Time Streaming of 4K Digital Cinema,”
Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 929-939.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4K2T517-2&_user=10&_handle=V-WA-AW-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=16&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=8daa2aa9a24e4891b5f8e715c0dc851d
Rajvikram Singh, Byungil Jeong, Luc Renambot, Andrew Johnson, Jason Leigh “TeraVision: a Distributed,
Scalable, High Resolution Graphics Streaming System”, 6th IEEE International Conference on Cluster Computing,
Sept. 20-23 2004, San Diego, California, pp. 391- 400.
Rajvikram Singh, Nicholas Schwarz, Nut Taesombut, David Lee, Byungil Jeong, Luc Renambot, Abel W. Lin, Ruth
West, Hiromu Otsuka, Sei Naito, Steven T. Peltier, Maryann E. Martone, Kazunori Nozaki, Jason Leigh and Mark
H. Ellisman, “Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end
OptIPuter,” Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 1032-1039.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4JX9V3K-1&_user=10&_handle=V-WAA-W-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=29&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=f82961bbe5a32bc2eb324777fdb8f2a9
Larry Smarr, Maxine Brown, Tom DeFanti and Cees de Laat (guest editors), Special section on iGrid 2005: The
Global Lambda Integrated Facility, Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October
2006, pp. 849-1054.
http://www.sciencedirect.com/science?_ob=IssueURL&_tockey=%23TOC%235638%232006%23999779991%236
25366%23FLA%23&_auth=y&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=15a5
756943abc5d1d31c1e7699e0e03e
Larry Smarr, Thomas A. DeFanti, Maxine D. Brown and Cees de Laat, “iGrid 2005: The Global Lambda
Integrated Facility” (editorial), Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006,
pp. 849-851.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4K0FMKH-3&_user=10&_handle=V-WAA-W-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=3&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=bb54fba66e548f0129e681d823295800
B. St. Arnaud, A.D. Chave, A. Maffei, E. Laszowka, L. Smarr, G. Gopalan, “An Integrated Approach to Ocean
Observatory Data Acquisition/Management and Infrastructure Control using Web Services,” Marine Technology
Society (MTS) Journal, Volume 38, Number 2, Summer 2004.
Hal S. Stern, David van Dyk, Padhraic Smyth and Seyoung Kim, “A variance components analysis of a multi-site
fMRI study,” Joint Statistics Meeting of the American Statistical Association, August 2004.
Bram Stolk and Paul Wielinga, “Building a 100 Mpixel graphics device for the OptIPuter,” Future Generation
Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 972-975.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4JW11WB-6&_user=10&_handle=V-WAA-W-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=21&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=4215d246d88496051ce61f16f07064ac
N. Taesombut, F. Uyeda, A.A. Chien, T.A. DeFanti, P. Papadopoulos, J. Leigh, M. Ellisman, and J. Orcutt, “The
OptIPuter: High-Performance, QoS-Guaranteed Network Service for Emerging E-Science Applications,”
IEEE Communication Magazine, Vol 44. No. 5, May 2006, pp. 38-45.
http://ieeexplore.ieee.org/xpl/tocresult.jsp?isYear=2006&isnumber=34336&Submit32=Go+To+Issue
Nut Taesombut, Xinran (Ryan) Wu, Andrew A. Chien, Atul Nayak, Bridget Smith, Debi Kilb, Thomas Im, Dane
Samilo, Graham Kent and John Orcutt, “Collaborative data visualization for Earth Sciences with the
OptIPuter,” Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp 955-963.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4K128SP-2&_user=10&_handle=V-WA-AW-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=19&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=4022c849b31613877a355eb26dca99ff
M. Taufer, M. Crowley, D. Price, A. Chien, C. L. Brooks III, “Study of an Accurate and Fast Protein-Ligand
Docking Algorithm based on Molecular Dynamics,” Proceedings of the Third IEEE International Workshop on
High Performance Computational Biology (HiCOMB 2004), held in conjunction with IPDPS 2004, Santa Fe, New
Mexico, April 2004.
http://www-csag.ucsd.edu/papers/paperHiCOMB04.pdf
M. Taufer, P. Cicotti, and A. Chien, “DGMonitor: a Performance Monitoring Tool for Sand-box based Desktop
Grid Platforms,” Proceedings of the Third International Workshop on Performance Modeling, Evaluation, and
Optimization of Parallel and Distributed Systems (PMEO-PDS 2004), Santa Fe, New Mexico, April 2004.
http://www-csag.ucsd.edu/papers/paperPMEO04.pdf
M. Thompson and Tom Moher, “HelioRoom: Problem-solving in a whole class visual simulation,” Proceedings
International Conference of the Learning Sciences (ICLS 2006), June 2006, Bloomington, IN, 2006, pp. 1000-1001.
THOMPSON-ICLS-HelioRoom.pdf
Yukio Tsukishima, Akira Hirano, Naohide Nagatsu, Takuya Ohara, Wataru Imajuku, Masahiko Jinno, Yoshihiro
Takigawa, Kazuo Hagimoto, Luc Renambot, Byungil Jeong, Jason Leigh, Tom DeFanti, Alan Verlo, Linda Winkler,
“The First Application-Driven Lambda-on-Demand Field Trial over a US Nationwide Network,” Proceedings
of OFC/NFOEC 2006 (Optical Fiber Communication/ National Fiber Optic Engineers Conference), sponsored by
IEEE/ComSoc, IEEE/LEOS and the Optical Society of America (OSA), Anaheim, CA, paper PDP48, March 5-10,
2006.
TSUKISHIMA-OFC-NFOEC06-FirstApplicationTrial.pdf
J. Turner, P. Smyth, F. Macciardi, J.H. Fallon, J. Kennedy, S. Potkin, “Imaging phenotypes and genotypes in
schizophrenia,” Neuroinformatics, Vol. 4, No. 1, March 2006, pp. 21-50.
V. Vishwanath, J. Leigh, E. He, M.D. Brown, L. Long, L. Renambot, A. Verlo, X. Wang, T.A. DeFanti, “WideArea experiments with LambdaStream over dedicated high-bandwidth networks,” IEEE INFOCOM HighSpeed Networking Workshop: The Terabit Challenge 2006, Barcelona, SPAIN, April 24-26, 2006.
VISHWANATH-IEEEInfocom2006.pdf
V. Vishwanath, P. Balaji, W. Feng, J. Leigh, D.K. Panda, “A Case for UDP Offload Engines in LambdaGrids,”
Proceedings of The Fourth International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet 2006),
Nara, Japan, February 2-3, 2006.
VISHWANATH-PFLDnet2006.pdf
V. Vishwanath, W. Feng, M. Gardner and J. Leigh, “A High-Performance Sensor for Cluster Monitoring and
Adaptation,” Technical Report – EVL Research Gear ID: Vishwanath 20060505.
Eric Weigle, Andrew A. Chien, “The Composite Endpoint Protocol (CEP): Scalable Endpoints for Terabit
Flows,” Proceedings of the 5th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid
2005), May 2005.
http://www-csag.ucsd.edu/papers/ccgrid05_CEP-draft_final.ps
Eric Weigle, Matti Hiltunen, Rick Schlicting, Vinay A. Vaishampayan and Andrew Chien, “Peer-to-Peer Error
Recovery for Hybrid Satellite-Terrestrial Networks,” Proceedings of the 6th IEEE International Conference on
Peer-to-Peer Computing (P2P2006), Cambridge, UK, September 6-8, 2006.
http://www-csag.ucsd.edu/papers/weigle-p2p06.pdf
Xingfu Wu, Valerie Taylor, Jason Leigh, and Luc Renambot, “Performance Analysis of a 3D Parallel Volume
Rendering Application on Scalable Tiled Displays,” International Conference on Computer Graphics, Imaging
and Vision (CGIV05), sponsored by Chinese Academy of Sciences, Beijing, China, July 26-29, 2005.
http://prophesy.cs.tamu.edu/publications/cgiv05.pdf
Xingfu Wu, Valerie Taylor, Joseph Paris, “A Web-based Prophesy Automated Performance Modeling System,”
IASTED International Conference on Web Technologies, Applications and Services (WTAS2006), July 17-19,
2006, Calgary, Canada.
http://prophesy.cs.tamu.edu/publications/wtas06.pdf
Xinran (Ryan) Wu, Andrew A. Chien, Matti A. Hiltunen, Richard D. Schlichting and Subhabrata Sen, “A High
Performance Configurable Transport Protocol for Grid Computing,” Proceedings of the 5th IEEE/ACM
International Symposium on Cluster Computing and the Grid (CCGrid 2005), May 2005.
http://www-csag.ucsd.edu/papers/pfldnet2006.pdf
Xinran Wu and Andrew Chien, “Evaluation of End-node Based Protocols for Lambda Networks,” Proceedings
of the Fourth International Workshop on Protocols for Fast Long-Distance Networks (PFLDNet2006), Nara, Japan,
Feb 2-3, 2006.
http://www-csag.ucsd.edu/papers/pfldnet2006.pdf
Huaxia Xia and Andrew Chien, “RobuSTore: Robust Performance for Distributed Storage Systems,” 14th NASA
Goddard -- 23nd IEEE Conference on Mass Storage Systems and Technologies (MSST2006), College Park, MD,
May 15-18, 2006. (Extended version available as UCSD Technical Report CS2006-0851.)
Huaxia Xia, Holly Dail, Henri Casanova and Andrew Chien, “The MicroGrid: Using Emulation to Predict
Application Performance in Diverse Grid Network Environments,” IEEE Second International Workshop on
Challenges of Large Applications in Distributed Environments (CLADE’04), held in conjunction with the 13th
International Symposium on High Performance Distributed Computing (HPDC-13), at the Hilton Hawaiian Village
Beach Resort, Honolulu, Hawaii, June 4, 2004, pp. 52-63.
http://www-csag.ucsd.edu/papers/clade04xia.pdf
C. Xiong, T. Murata, J. Leigh, “An Approach for Verifying Routing Protocols in Mobile Ad Hoc Networks Using
Petri Nets,” IEEE 6th CAS symposium on emerging technologies: Frontiers of mobile and wireless
communication,” Shanghai, China, May 31-June 2, 2004.
Chaoyue Xiong, Jason Leigh, Eric He, Venkatram Vishwanath, Tadao Murata, Luc Renambot, Thomas A. DeFanti,
“LambdaStream: A Data Transport Protocol for Network-Intensive Streaming Applications over Photonic
Networks,” Proceedings of the Third International Workshop on Protocols for Fast Long-Distance Networks
(PFLDnet 2005), Lyons, France, February 3-4, 2005.
http://www.ens-lyon.fr/LIP/RESO/pfldnet2005
Oliver Yu, Anfei Li, Yuan Cao, Leping Yin, Ming Liao and Huan Xu, “Multi-domain Lambda Grid data portal
for collaborative Grid applications,” Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October
2006, pp. 993-1003.
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V06-4JWMT0B-1&_user=10&_handle=V-WAA-W-BA-MsSAYZA-UUA-U-AACDWZZVBZ-AACVYVDWBZ-VVCCWEWV-BAU&_fmt=summary&_coverDate=10%2F31%2F2006&_rdoc=24&_orig=browse&_srch=%23toc%235638%232006
%23999779991%23625366!&_cdi=5638&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10
&md5=009e1e7bbf6c7f350174ee88384c62c5
BOOKS AND BOOK CHAPTERS
Andrew A. Chien, Xinran (Ryan) Wu, Nut Taesombut, Eric Weigle, Huaxia Xia, and Justin Burke, “OptIPuter
System Software Framework,” Technical Report CS2004-0786, Concurrent Systems Architecture Group, UCSD,
April 12, 2004.
CHIEN-OptSystemSoftwareFramework-April2004.pdf
D.J. Cox, “Visualization and Visual Metaphors” (chapter), Aesthetic Computing, (Paul Fishwick, editor), MIT
Press, 2006, pp. 14-89
http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid=10919
D.J. Cox, “Visualization in the Life Sciences” (chapter), Databasing the Brain: Data to Knowledge
(Neuroinformatics), Shankar Subramaniam and Stephen Koslow (editors), John Wiley Press: New York,
November, 2004, pp. 123-152.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0471309214.html
Brian N. Davis and Brian G. Maddox, “Blending Technologies: Remote Sensing, GPS and Visualization - Real-time
Visualization Techniques,” Manual of Geographic Information Systems (Marguerite Madden, Center for Remote
Sensing and Mapping Science, Department of Geography, University of Georgia, Editor-in-Chief) published by the
American Society of Photogrammetry and Remote Sensing, to be published 2006
Tom DeFanti, Laurin Herr and Natalie Van Osdol, “CineGrid, A Grid for Digital Cinema” (chapter), Grid
Networks: Enabling Grids with Advanced Communication Technology, (Franco Travostino, Joe Mambretti,
Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. 33-36.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
S. Gaffney and P. Smyth, “Joint Probabilistic Curve-Clustering and Alignment” (chapter), Advances in Neural
Information Processing Systems (NIPS), 2005, in press.
http://books.nips.cc/papers/files/nips17/NIPS2004_0712.pdf
Robert L. Grossman, “Alert Management Systems -- A Quick Introduction” (chapter), Managing Cyber Threats:
Issues, Approaches and Challenges, Vipin Kumar, Jaideep Srivastava, Aleksandar Lazarevic (editors), Kluwer
Academic Publisher, 2005, pp. 281-294.
Robert L. Grossman, Y. Gu, D. Hanley, X. Hong, D. Lillethun, J. Levera, J. Mambretti, M. Mazzucco, J.
Weinberger, H. Kargupta, “Photonic Data Services: Integrating Path, Network and Data Services to Support Next
Generation Data Mining Applications” (chapter 5), Data Mining: Next Generation Challenges and Future
Directions, Advances in Knowledge Discovery, A. Joshi, K. Sivakumar and Y. Yesha (editors) AAAI Press, 2004.
Robert Grossman, “Data Mining” (chapter), Grid Networks: Enabling Grids with Advanced Communication
Technology, (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006,
pp. 30-32.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
Yunhong Gu and Robert L. Grossman, “UDT: A Transport Protocol for Data Intensive Applications,” IETF Draft.
Yasuhiro Kirihata, An Implementation of Sort-Last Volume Rendering over an Optical Network Backplane,
MS Thesis Project report, Electronic Visualization Laboratory, University of Illinois at Chicago, April 2004.
http://www.evl.uic.edu/cavern/rg/20040411_kirihata
Jason Leigh, Eric He, Robert Grossman, “Grid Networks and UDP Services, Protocols, and Technologies”
(chapter), Grid Networks: Enabling Grids with Advanced Communication Technology, (Franco Travostino, Joe
Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. 171-184.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
Jason Leigh, Luc Renambot, Maxine Brown, “Grid Network Requirements for Large Scale Visualization and
Collaboration” (chapter), Grid Networks: Enabling Grids with Advanced Communication Technology, (Franco
Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, published July 2006, pp. 18-23.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
Xin Liu, Scalable Online Simulation for Modeling Grid Dynamics, UCSD Computer Science PhD Thesis,
November 2004.
Joe Mambretti and Richard des Jardins, Report of Optical Network Testbeds Workshop 2 (ONT2), hosted by the
NASA Research & Education Network (NREN), sponsored by National Coordination Office for Networking and
Information Technology Research and Development (NITRD) Large Scale Networking (LSN) Coordinating Group,
NASA Ames, CA, October, 2005.
www.nren.nasa.gov/workshop8/pdf/ONT2_Report_Full.pdf
Joe Mambretti, “Grid Network Services Building on Multi-Service Networks” (chapter), Grid Networks: Enabling
Grids with Advanced Communication Technology, (Franco Travostino, Joe Mambretti, Gigi KarmousEdwards, editors), John Wiley & Sons, July 2006, pp. 99-112.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
Joe Mambretti, “Infrastructure as Platform: Services-Oriented Architecture, Visualization, and 21st Century
Communications” (chapter), Annual Review of Communications, International Engineering Consortium, Vol. 59, to
be published 2006
Joe Mambretti, “OptIPuter” (appendix), Grid Networks: Enabling Grids with Advanced Communication
Technology, (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006,
pp. 315.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
Joe Mambretti, “The Digital Communications Grid: Creating A New Architectural Foundation for 21st Century
Digital Communications Based on Intelligent Lightpaths” (chapter), Annual Review of Communications,
International Engineering Consortium, Vol. 58, 2005, pp. 307-314.
Joe Mambretti, Bill St. Arnaud, Tom DeFanti, Maxine Brown, Kees Neggers, “Grid Network Services and
Implications for Network Service Design” (chapter), Grid Networks: Enabling Grids with Advanced
Communication Technology, (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley &
Sons, July 2006, pp. 81-98.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
Larry Smarr, “Foreword,” Grid Networks: Enabling Grids with Advanced Communication Technology,
(Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. xxv –
xxvi.
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
J. Touch, “A TCP Option for Port Names,” Internet Draft, April 14, 2006.
www.isi.edu/touch/pubs/draft-touch-tcp-portnames-00.txt
J. Touch, A. Mankin, “The TCP Simple Authentication Option,” Internet Draft, June 9, 2006.
www.isi.edu/touch/pubs/draft-touch-tcpm-tcp-simple-auth-00.txt
J. Touch, D. Black, Y. Wang, “Problem and Applicability Statement for Better Than Nothing Security
(BTNS),” Internet Draft, February 17, 2006. (September 23, 2005 version also issued.)
www.isi.edu/touch/pubs/draft-ietf-btns-prob-and-applic-02.txt
J. Touch, Y-H. Yan, “Reducing the Impact of DoS Attacks on Endpoint Security,” (submitted to NPsec at ICNP
2005, to be issued as a tech. report pending reviewer decision -- draft available after reviewer decision, notification
due end July 2006).
Joe Touch, “Defending TCP Against Spoofing Attacks,” IETF TCP Modifications (TCPM) Working Group, The
Internet Society, April 2005.
www.isi.edu/touch/pubs/draft-ietf-tcpm-tcp-antispoof-01.txt
J. Touch., “Defending TCP Against Spoofing Attacks,” Internet Draft, May 15, 2006. (February 18, 2006 and
October 8, 2005 versions also issued.)
www.isi.edu/touch/pubs/draft-ietf-tcpm-tcp-antispoof-04.txt
Joe Touch, “Variable Effort, Variable Certainly Triage for IPsec,” 63rd IETF Meeting, Paris, France, July 31August 5, 2005 (to be presented).
Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, (editors), Grid Networks: Enabling Grids with
Advanced Communication Technology, John Wiley & Sons, July 2006
http://www.wiley.com/WileyCDA/WileyTitle/productCd-0470017481.html
Shalini Venkataraman, Vol-a-Tile Benchmarks, MS Thesis Project report, Electronic Visualization Laboratory,
University of Illinois at Chicago, April 2004.
http://www.evl.uic.edu/cavern/rg/20040412_venkataraman
Eric Weigle, “A Performance Analysis of the BigBangwidth Lightpath Accelerator,” Technical Report, Concurrent
Systems Architecture Group, UCSD, March 2004.
WEIGLE-BIGBANDWIDTH.pdf
Xinran (Ryan) Wu, Andrew A. Chien, “A Distributed Algorithm for Max-min Fair Rate Allocation”, UCSD
Technical Report, July 2005.
http://www-csag.ucsd.edu/papers/gtp_dist.pdf
Chaoyue Xiong, LambdaStream Networking, MS thesis, Electronic Visualization Laboratory and the Computer
Science Department, University of Illinois at Chicago, May 2005.