Standard Operating Procedure Title: Bradford Assay to measure the concentration of protein in leaf extract solution Department: Agronomy Created by: Whitney Bouma Laboratory: Crop Production & Physiology Lab Suite Supervisor: Dr. Allen Knapp Lab Supervisor: Whitney Bouma Date approved: Procedure Overview: This procedure outlines the Bradford method which is used for quantifying the amount of protein. It is a colorimetric assay that will use a spectrophotometer to construct a standard curve which will be used to estimate the amount of protein in your sample. Equipment and reagents necessary: Equipment: Spectrophotometer Glass test tubes Beaker Weight boats Spatula Standard Disposable Polystyrene Cuvettes Pipettes Stir bar Stir plates Reagents: Coomassie Blue G250 Ethanol 95% Phosphoric acid 85% Deionized water Bovine Serum Albumin Leaf extract samples Procedure: Reagent Preparation: Bradford Reagent: 1. Measure out 100mg of Coomassie Blue G250. 2. Make 500 ml 95% stock solution by measuring 450 mL ethanol and making up to a volume of 500 ml with DI H2O. 3. Dissolve the Coomassie blue in 50 mL of 95% ethanol 4. Mix this solution with 100 ml of 85 % phosphoric acid. 5. Make up volume to 1 L with deionized water 6. Filter the solution through Whatman no. 1 filter paper and then store in an amber bottle at room temperature. 1 revised 18 June 2008 me 7. The solution should last for several weeks, however, if you notice precipitate then refilter before use. Stock protein Standard: 1. Make a stock solution of Bovine Serum Albumin (BSA) at a concentration of 1mg/mL. This should be stored frozen at -20˚C. 2. Since the moisture content of solid protein may vary during storage, the precise concentration of protein in the standard solution should be determined from its absorbance at 280 nm. The absorbance of 1mg/mL solution of Bovine Serum Albumin is 0.66. Calibration Curve and assay samples: 1. Pipet volumes of 10, 20, 40, 60, 80, and 100 uL of the stock protein standard (1mg/mL solution of Bovine Serum Albumin) in to clean glass test tubes. 2. Using distilled water, make each test tube up the voulume of 100 uL. 3. Create a blank with 100 uL of just distilled water. 4. Pipet 100 uL Leaf extract sample in to clean glass test tubes and develop a renge of delutions (1, 1:10, 1:100, 1:1000). 5. Add 5 mL of the protein reagent to each of the test tubes and mix by gently vortexing or inversion. 6. Using a spectrophotometer set to A595, measure each of the samples against the reagent blank between 2 min and 1 hour after mixing. 7. Develop a standard curve to determine the concentration of the unknown sample. Personal Protective Equipment / Engineering Controls: Lab coat, eye protection and hand protection must be selected as required by Section D of the EH&S Laboratory Safety Manual. Check the box(es) next to the item(s) which are appropriate for your procedure. Nitrile gloves Safety glasses Face shield Dust mask Latex gloves Splash goggles Lab coat Fume hood Neoprene gloves Vented goggles Apron Biosafety cabinet Insulated gloves Eye wash station Safety shower Respirator Note: Open-toed and heeled shoes are NOT allowed. Other Control Measures: Ethanol: Eye Contact Rinse immediately with plenty of water, also under the eyelids, for at least 15 minutes. Obtain medical attention. Skin Contact Wash off immediately with plenty of water for at least 15 minutes. Obtain medical attention. Inhalation Move to fresh air. If breathing is difficult, give oxygen. Do not use mouth-to-mouth resuscitation if victim ingested or inhaled the substance; induce artificial respiration with a respiratory medical device. Obtain medical attention. Ingestion Do not induce vomiting. Obtain medical attention. Phosphoric acid: 2 revised 18 June 2008 me Eye Contact Rinse immediately with plenty of water, also under the eyelids, for at least 15 minutes. Immediate medical attention is required. Skin Contact Wash off immediately with plenty of water for at least 15 minutes. Immediate medical attention is required. Inhalation Move to fresh air. If breathing is difficult, give oxygen. Do not use mouth-to-mouth resuscitation if victim ingested or inhaled the substance; induce artificial respiration with a respiratory medical device. Immediate medical attention is required. Ingestion Do not induce vomiting. Call a physician or Poison Control Center immediately Coomassie blue: If inhaled If breathed in, move person into fresh air. If not breathing, give artificial respiration. In case of skin contact Wash off with soap and plenty of water. In case of eye contact Flush eyes with water as a precaution. If swallowed Never give anything by mouth to an unconscious person. Rinse mouth with water. Bovine Serum Albumin If inhaled If breathed in, move person into fresh air. If not breathing, give artificial respiration. In case of skin contact Wash off with soap and plenty of water. In case of eye contact Flush eyes with water as a precaution. If swallowed Never give anything by mouth to an unconscious person. Rinse mouth with water Handling & Storage Precautions: Phosphoric acid: Handling Use only under a chemical fume hood. Wear personal protective equipment. Do not get in eyes, on skin, or on clothing. Do not breathe vapors/dust. Do not ingest. Storage Keep containers tightly closed in a dry, cool and well-ventilated place. Corrosives area. Ethanol: Handling Wear personal protective equipment. Ensure adequate ventilation. Use explosion-proof equipment. Keep away from open flames, hot surfaces and sources of ignition. Take precautionary measures against static discharges. Do not breathe vapors or spray mist. Do not get in eyes, on skin, or on clothing. Do not ingest. Storage Keep containers tightly closed in a dry, cool and well-ventilated place. Keep away from open flames, hot surfaces and sources of ignition. Flammables area. Coomassie blue: Precautions for safe handling Provide appropriate exhaust ventilation at places where dust is formed. Normal measures for preventive fire protection. Conditions for safe storage Keep container tightly closed in a dry and well-ventilated place. Keep in a dry place. Bovine Serum Albumin: Precautions for safe handling Provide appropriate exhaust ventilation at places where dust is formed. 3 revised 18 June 2008 me Conditions for safe storage Keep container tightly closed in a dry and well-ventilated place. Recommended storage temperature: 2 - 8 °C Light sensitive. Keep in a dry place Waste Disposal Procedures: Unless EH&S specifically instructs otherwise, all chemical/reagent waste (including excess solutions) must be placed in an appropriately labeled hazardous waste container for EH&S disposal. Compatible substances may be combined into one waste container. Spill/Release Containment and Clean Up/Decontamination Procedures: Use personal protective equipment. Ensure adequate ventilation. Remove all sources of ignition. Take precautionary measures against static discharges. Do not get in eyes, on skin, or on clothing. Health & Safety Summary for Required Reagents: In case of Ethanol: Inhalation May be harmful if inhaled. May cause respiratory tract irritation. Skin May be harmful if absorbed through skin. May cause skin irritation. Eyes May cause eye irritation. Ingestion May be harmful if swallowed. In case of Phosphoric Acid: Inhalation May be fatal if inhaled. Material is extremely destructive to the tissue of the mucous membranes and upper respiratory tract. Skin Harmful if absorbed through skin. Causes skin burns. Eyes Causes eye burns. Ingestion Harmful if swallowed. In case of Coomassie Blue: Inhalation May be harmful if inhaled. May cause respiratory tract irritation. Skin May be harmful if absorbed through skin. May cause skin irritation. Eyes May cause eye irritation. Ingestion May be harmful if swallowed. In case of Bovine Serum Albumin: Inhalation May be harmful if inhaled. May cause respiratory tract irritation. Skin May be harmful if absorbed through skin. May cause skin irritation. Eyes May cause eye irritation. Ingestion May be harmful if swallowed. 4 revised 18 June 2008 me Brief description of associated hazards: C a r c i n o g e n Chemical name Ethanol T e r a t o g e n M u t a g e n R e p r o d u c t i v e S e n s i t i z e r E f f e c t s x Phosphoric Acid Coomassie Blue Bovine Serum Albumin x x x I r r i t a n t T o x i c H i g h l y C o r r o s i v e T o x i c C o m b u s t i b l e C o m p r e s s e d E x p l o s i v e F l a m m a b l e G a s Target Organ(s) x Eyes, Skin, Reproductive System, Central nervous system (CNS), Liver, Kidney, Blood, Heart Eyes, skin, x x x respiratory system, GI tract, Liver, Blood, Bone marrow Eyes and Skin O r g a n i c P e r o x i d e s O x i d i z e r Eyes and Skin U n s t a b l e W a t e r H e a l t h R e a c t i v e Incompatibilities Strong oxidizing agents, Strong acids, Acid anhydrides, Alkali metals, Ammonia, Peroxides x x P y r o p h o r i c x R e a c t i v i t y 2 3 0 Strong oxidizing agents, Metals, Bases, Alcohols, Amines, halogenated agents 3 0 0 Strong acids and oxidizing agents Strong acids and oxidizing agents 0 0 0 The above summary consists of guidelines for proper handling & disposal of chemicals used in this procedure. You must read and understand the contents of the entire MSDS(s) before starting this procedure. References: Walker, John M., The Protein Protocols Handbook. 2nd Edition. Chapter 4. The Bradford Method for Protein Quantification. 5 F l a m m a b i l i t y revised 18 June 2008 me 0 0 0