Dr. Pritish Kumar Varadwaj
Assistant Professor
IIITA, India
Qualification: M .Tech (IT), PhD
Details of Consultancy undertaken:
- Advent (AG) Bioinformatics Pvt. Ltd. New Delhi, India(10th September 2004-10th March 2005)
- Cognigene Infosystems Pvt. Ltd, India (From August 2nd 2004 till date)
Professional Membership:
IEEE, Association of Computer Machinery (ACM), ACM-SIGCHI, Bioclues Organization,
Bioinformatics Organization, Biotechnology Research Society of India (BRSI), International Society
for Computational Biology (ISCB), ACM IIITA Professional Chapter, North India ACM SIGCHI
Chapter.
External funded project:
ILTP-A-8.25 by DST, India,
Role: Principal Investigator
Patent information:
In process of applying patent on gene finding protocol developed.
Publication: (List of published and in Press only)
1. Niranjan Baisakh, Prasanta K Subudhi, Pritish Varadwaj, “Primary responses to salt stress in a
halophyte, smooth cordgrass (Spartina alterniflora Loisel)”, Springer Journal: Functional &
Integrative Genomics, Feb-2008; 18305970, 1438-7948.
2.
Varadwaj Pritish Kumar, Lahiri Tapobrata, “FGO: A novel ontology for identification of ligand
functional group”, Bioinformation 2(3): 113-118 (2007), PMCID: PMC2248449.
3.
Saxena Aditya , Varadwaj Pritish , Singh S., Jaiswal Manoj, Misra K. & Lahiri T.,
“Phylogenetic analysis of M.leprae genome for identification of novel drug targets” , January2006, 58-62 ,Indian Journal of Biotechnology.
4.
Human Signal Transducer and Activator of Transcription 3 (STAT3) protein modeling and drug
designing for psoriasis Anil Butle, Rajnish Kumar, Anju Sharma, Alok K Singh, Pritish K
Varadwaj, Rajesh Kumar Tiwari
Digest Journal of Nanomaterials and Biostructures
Academy of Romanian Scientists, Romania
Vol. 7, No. 3
2012
1027
–
1038
1
5.
Annotation of Human Genomic Sequence by Combining Existing Gene Prediction Tools Using
Hybrid Approach Anubhav Saxena, Gokulakrishnan Pitchaipillai and Pritish Kumar Vardawaj
Communications in Computer and Information Science, Pages
Springer, Germany1,
Volume 306, 2012
481-489
6.
Classification of oral bioavailability of drugs by machine learning approaches: A comparative
study Rajnish Kumar, Anju Sharma,Pritish Varadwaj,Ausaf Ahmad and Ghulam Md Ashraf
Journal of Computational Interdisciplinary Sciences
Pan-American Association of
Computational Interdisciplinary Sciences, SOLGRAF Publicacoes Ltda, Rio de Janeiro, RJ,
Brazil
2(3): 2011, 1-18
7.
Clasification Of Arrhythmic ECG Data Using Machine Learning Techniques Abhinav Vishwa,
Mohit K. Lal, Sharad Dixit, Dr. Pritish Vardwaj International Journal of Artificial Intelligence
and Interactive Multimedia Imai Software Research Group,Spain
Vol. 1, 4
8.
A prediction model for Oral Bioavailability of drugs using physicochemical properties by
Support vector Machine. Rajnish Kumar, Anju Sharma,Pritish Kumar Varadwaj Journal
of
Natural Science, Biology and Medicine
University College Cork,Ireland
2(2)
2011
168-173
9.
A comparative study of Support Vector Machine, Artificial Neural Network and Bayesian
classifier for toxicity prediction Anju Sharma, Rajnish Kumar, Pritish Kumar Varadwaj, Ausaf
Ahmad, Ghulam Md Ashraf Interdisciplinary Sciences: Computational life Sciences
Springer, Germany
3(3):
2011
232-239
10. Prediction of mutagenicity of compounds by Support Vector Machine Anju Sharma, Rajnish
Kumar, Pritish Varadwaj
Online Journal of Bioinformatics Australia / University of
Oklahoma 12(1): 2011
9-17
11. An overview of Psoriasis with respect to its protein target Pritish Kumar Varadwaj, Anju
Sharma, Rajnish Kumar
Egyptian Dermatology Online Journal
Egypt 6(1): 2010
1-13
12. Mitoxantrone: an agent with promises for anticancer therapies Pritish Varadwaj, Krisna Misra,
Anju Sharma, Rajnish Kumar
Electronic Journal of Biology
China 6(2): 2010;
34-40
13. Computational Approaches for Oral Bioavailability prediction: An overview Rajnish Kumar,
Anju Sharma, Pritish Kumar Varadwaj
Biomirror,
India
1(4):
2010; 1-7
14. Stem Cells: An overview with respect to cardiovascular and renal disease Rajnish Kumar, Anju
Sharma, Pritish Kumar Varadwaj, Ashok Pattnaik
Journal of Natural Science, Biology and
Medicine University College Cork, Ireland 1:
2010; 43-52
15. Two-phase clustering based aggregation of sensor data Manish Kumar, Pritish Kumar Varadwaj
and Shekhar Verma International Journal of Data Mining, Modelling and Management,
Inderscience Publisher,UK Volume 2, Number 3,
2010
216 – 237
2
16. Fungome: Annotating Proteins implicated in fungal pathogenesis Ranganath Gudimella,
Sivaramaiah Nallapeta, Pritish Varadwaj and Prashanth Suravajhala
Bioinformation
Singapore 5(5)
2010
202-7
17. The use and impact of DNA microarrays in Toxoplasma gondii research - a review Gautam
Budhayash, Singh Gurmit, Varadwaj Pritish, Singh Satendra, Farmer Rohit
International
Journal of Pharmaceutical Sciences Review and Research
India
Volume 4, Issue 2,
2010
48-55
18. Trichomonas Vaginalis Genome analysis using Bioinformatics approaches Singh Satendra,
Singh Gurmit, Gautam Budhayash, Varadwaj Pritish, Farmer Rohit, International Journal of
Pharmaceutical Sciences Review and Research India Volume 3, Issue 1, 2010
38-42.
19. Influence of virtual conferences on bioinformatics in India and developing nations. Prashanth
Suravajhala, Jeffrey W. Bizzaro, Pritish Varadwaj, Tiratha Raj Singh and Arun GuptaCurrent
Science India
98(11) 2010
1428.
20. Detection of Splice Sites Using Support Vector Machine Pritish Varadwaj, Neetesh Purohit, and
Bhumika Arora
Springer Communication in Computer and Information ScienceSpringer,
Germany 1865-0929
2009
493-502
21. Analysis of a BTS Failure Tolerant Scheme for GSM Network Neetesh Purohit, Pritish
Varadwaj, Sanjiv Tokekar CiiT International Journal of Wireless Communication India
2009
22. Functional group based Ligand binding affinity scoring function at atomic environmental level,
Varadwaj Pritish Kumar, Lahiri Tapobrata, Bioinformation Singapore,3(6)
2009 268274.
23. Varadwaj Pritish, Purohit Neetesh, Arora Bhumika, “Detection of Splice Sites using Support
Vector Machine”, Proceedings IC3, Springer Communications in Computer, August 17-19,
2009, JIIT, Noida.
24. Varadwaj Pritish, Purohit Neetesh, Gupta Pooja,
“Prediction of Blood Brain Barrier
permeability using Support Vector Machine”, IEEE International conference NABIC 2009, Dec
9-11, 2009, Coimbatore, India.
25. Lahiri T., Chandulal G. B., Mishra H., Vaish A., Varadwaj P.K., Varma S., Anticeperov V.E.,
Obukhov Yu.V., Morozov A. A., Mansurov G., "A computational approach for risk-estimation
of Coronary Artery Blockade using thermogram", Proc. 9th International Symposium on
Measurement Technology and Intelligent Instruments (ISMTII), 29 June – 2 July 2009, SaintPetersburg, Russia.
26. Vjacheslav E. Antsiperov, Yuri V. Obukhov, Gennady K. Mansurov, Tapobrata Lahiri, Gohel
Bakul Chandulal, Hrishikesh Mishra, Abhishek Vaish, Pritish K. Varadwaj, Shirshu Varma,
“Heart rate wireless monitoring system, novel approach to ECG processing and representation”,
Proc. 9th International Symposium on Measurement Technology and Intelligent Instruments
(ISMTII), 29 June – 2 July 2009, Saint-Petersburg, Russia.
3
27. Pritish Varadwaj and Lahiri T, “Functional group based Ligand retrieval (FBLR) through active
site rendering using a novel distance based binding affinity function at atomic environmental
level”, Second virtual conference on “Bioinformatics to Systems Biology", Online at
Bioinformatics.Org, July 14, 2008.
28. Neetesh Purohit, Pritish Varadwaj, “Reliability Analysis of Wireless Sensor Network", IEEE
International Conference, ICON 2008, December 12-14,2008, New Delhi.
29. Niranjan Baisakh, Prasanta K Subudhi , Pritish Varadwaj,"Generation And Analysis Of
Expressed Sequence Tags (ESTs) From A Grass Halophyte Spartina alterniflora", Plant &
Animal Genomes XV Conference, San Diego, CA, January 13-17, 2007.
30. Varadwaj Pritish Kumar , Ravi Prakash, “SOM Based Expression Profiling of Diffuse Large BCell Lymphoma, “The International Symposium on
Bio-Medical Informatics and
Cybernetics(BMIC 2007) (Accepted).
31. Mukul Bhala, Varadwaj Pritish Kumar et. al., “A comparative Phylogenetic study and
evolutionary behaviour of Ascorbic acid producing genes in Bacteria, Fungi and Plants”, A-18,
DST-NWRLS,IABT-2007, January 20-21,2007.
32. Singh D.V., Misra K., Varadwaj P.K, S. Imran, “Binding Mode of Curcumin and its conjugates
at the active site of thioredoxin reductase: Designing of an anticancer Drug”, Accepted in 6th
annual International conference on computational system Bioinformatics CSB2007 San Diego,
August., 13-17, 2007.
33. Brijesh Singh Yadav, Dr.Navita Srivastva, Mr.Pritish Kumar Varadwaj, “Prediction of Catalytic
Residues in Protein Active Site through ANN Classifier”, International Conference on Soft
Computing ICSC-2007, December 22nd-23rd 2007, IET, Alwar, Rajasthan, India.
34. Prashant Ankur Jain, Satendra Singh, Pritish Varadwaj, " To study the effect of cofactor and
Ligand molecule on the structure of Enzyme", Page-44-45, CSI-NSICTLS Proceeding,
November 17-18, AAIDU-2006.
35. Prashant Ankur Jain, Satendra Singh, Pritish Varadwaj, "Strcture based Drug Designing for
novel drug target identified in Mycobacterium Tuberculosis", Page- 47-48,CSI-NSICTLS
Proceeding, November 17-18, AAIDU-2006.
36. Varadwaj.P.K,Lahiri.T, Tsodikov O., “Surface Roughness Index a novel approach to compare
protein surface”, IEEE Catalog: 05EX979 Proceedings of ICISIP 2005, 474-478.
37. Singh.V,Varadwaj P.K, Singh.S, Lahiri.T, “ DNA Signal to explore Evolutional Self
Organisation of Genome”, 4th Recomb Satellite Meeting , May 22-23 , 2004,DNA Science and
Technology , Stanford University 2004 .
38. Varadwaj.P.K,Singh.V,“3D ligand database searching by ligand discreatisation with a novel
Linear Transformation for Pharmacophore mapping”, CTDDR-2004 International Proceeding.
4