Three Gorges Dam: An Ecological Perspective of Natural Flow and Dam Operations. In a series of publications, including one in a recent issue of Frontiers, Wu et al. (2003a,b, Frontier 2004 2:241-248) reviewed the potential impacts of the Three Gorges Dam (TGD) in China and suggested the future direction of ecological research related to TGD. Wu et al. clearly delineated the effects of damming on spatial patterns of landscape via inundation and eloquently put forward research questions related to habitat fragmentation. In addition to their delineation, I would like to point out two related issues that deserve serious attention, the dam operation and the consequence of alternating temporal patterns of flow, particular downstream of TGD. The ecological impacts of a dam depend as much on dam operation as on the physical structure of dam. Undoubtedly, the physical structure sets constraints on water flow and many ecological processes. The dam interrupts the river continuum and the connectivity of populations, trophic structures, and ecosystem processes. However, it is the dam operation that controls the regime of water distribution, both spatially and temporally. It is the operation that determines the exact quantity of flow at any point of time, and therefore the magnitude, frequency, duration, timing and pattern of flood pulses downstream. Most river ecosystems have evolved out of natural flood pulses. Flood pulses directly influence water quality, sediment deposition and transport, physical habitat conditions and connections, and energy sources in the river. Microbes, plants and animals that live in the river and affiliated wetlands are highly adapted to the rhythms of natural hydrologic variability. These organisms are responsible for much of the water purification, decomposition, and nutrient cycling that occurs in the river. Natural flood pulses maintain the diversity of native species, the integrity and health of river and riverine wetland ecosystems, and the ecosystem services that the river supports (Junk et al. 1989, Poff et al. 1997). Traditionally, dam operations seldom take into account ecological consequences and ecosystem services, and instead focus on maximizing economic benefits of hydrological alternation, such as power generation and flood control. Such operations create different artificial pulses upstream and downstream, alter or reverse the flow temporal patterns, and decouple flow pulses with climate seasonality and the phenological rhythm of biota. As a consequence, abundance of native species declines, extinctions occur, fish productivity and biodiversity decrease, exotic species invade and expand, food web structures become distorted, and nutrient cycling and fluxes are changed. These impacts severally damage the ecosystem functions and services (Poff et al. 1997). Further, once ecosystems are degraded, it is usually prohibitively costly and often impossible to reconstruct the functions and services. Recently, the trend in operations has started to change. An increasing number of dam authorities started to consider minimizing ecological damages and incorporate ecological restoration into the operations. Here, I would argue, TGD authority should recognize that the control and reduction of ecological damages and ecological restoration are legitimate goals. The maintenance and restoration of natural flood pulses should be included in the operation plan. TGD managers seem yet to realize the ecological importance of the natural flow regime. TGD is the largest dam in the world. Downstream of TGD is arguably the most important economic region of China, populated by hundreds of millions of people. The wellbeing of these people and the economy of region rely on the ecosystem services provided by the river and the natural flow regime. The ecological demands must be considered among the competing demands in dam operation. An ecologically sound operation schedule not only can reduce and control some seemingly inevitable damages, but also can help to partially restore the already damaged ecosystem. Land use changes, such as urban development, agriculture, and deforestation, have already altered the flow regime of Yangtze River and severely damage the river ecosystem in the past. In contrast, an ecologically ignorant operation plan will cause much more and extremely severe damages. Making and operating an ecologically sound flow management plan will create great challenges and opportunities for ecologists. Managers will need ecologists to provide quantitatively accurate scientific information. Meanwhile, the operation brings about a great grand-scale experiment downstream. The planned hydrological manipulation may allow scientists to design controlled studies to investigate how hydrology links to ecology at the regional and habitat scales. Currently, uncertainty is high and accuracy is low in our quantitative understanding. The system is very large and complex. The dam managers, ecologists, engineers, hydrologists, and stakeholders will need to work together and develop an adaptive management strategy, of which key elements include spatially explicit hydro-ecologic models and systematic monitoring of representative populations, community structures, ecosystem fluxes and landscape patterns. As TGD is already constructed, the debate “to build or not to build” is long over. Now, the question “how to operate the dam with the least ecological damage” becomes critical and needs to be addressed as early as possible. Reference Dong Junk, W.J., P.B. Bayley, and R.E. Sparks. 1989. The flood pulse concept in riverfloodplain systems, pp. 110-127. In: D.P. Dodge (ed.) Proceedings of the Interna- tional Large River Symposium. Can. Spec. Publ. Fish. Aquat. Sci. 106. Poff, N.L., Allan, J.D., Bain, M.B., Karr. J.R., Prestegaard, K.L., Richter, B.D., Sparks, R.E. and Stromberg, J.C. 1997. The natural flow regime: A paradigm for river conservation and restoration. BioScience. 47: 769-784. Wu, J., J. Huang, X. Han, Z. Xie, and X. Gao. 2003. Three-Gorges Dam: The Largest “Natural” Experiment of Habitat Fragmentation? Science 300:1239-1240. Wu, J., J. Huang, and X. Han. 2003. Three-Gorges Dam: Risk to ancient fish. Science 302:1149-1150. Wu, J., J. Huang, X. Han, X. Gao, F. He, M. Jiang, Z. Jiang, R. B. Primack, and Z. Shen. 2004. Three Gorges Dam: An Ecological Perspective. Frontiers in Ecology and the Environment 2(5): 241-248.