Appendix of the Manuscript: Automated Quantification of Coronary Plaque with Computed Tomography: Comparison with IVUS using a Dedicated Registration Algorithm for Fusion-Based Quantification IVUS Lumen and Vessel Wall Contour Detection Coronary plaque characteristics were evaluated on intravascular ultrasound (IVUS) data sets by an independent and blinded observer using offline dedicated post-processing software (IVUS CMS 4.0, Medis Medical Imaging Systems, Leiden, the Netherlands). Along the full length of the IVUS run, lumen-intima and media-adventitia interface were identified in longitudinal and transversal views by an automatic contour detection algorithm. A limited number of individual cross-sectional frames were manually adapted to optimize lumen and vessel wall contour detection. IVUS contour detection was performed independently from the contour detection derived from CT imaging. Computed Tomography Lumen and Vessel Wall Contour Detection On cardiac computed tomography (CT) data sets, the dedicated software was able to detect both lumen and vessel wall contours which were used for automated quantitative measurements of coronary plaques, as depicted in Figure 1, upper panel. At first, a fast vessel-tracking algorithm was used to obtain the 3-dimensional centerline (ranging from the proximal to distal marker) of each coronary artery. This vessel-tracking step consists of: (1) a pre-segmentation of the vessel between the proximal and distal point and (2) a fast path backtracking from distal to the proximal point through the center of the segmentation. Based on this centerline, a stretched multi-planar reformatted (MPR) volume was created of the segment of interest. MPR volumes allow the analysis of curved coronary arteries as straight vessels. Next, four longitudinal cross-sections were extracted from the MPR volume at 45 degrees angular intervals. Subsequently, lumen borders in these four longitudinal images were detected by a model guided minimum cost approach (MCA). The MCA method uses a combination of spatial first-, and second-derivative gradient filters in combination with knowledge of the expected CT intensity values in the arteries. Therefore, the MCA method is not sensitive to differences in attenuation values between different data sets. The longitudinal detection allows a smooth interpolation between the proximal and distal sites of coronary bifurcations. The MCA with a circular lumen model was used to detect the lumen border contours in each transversal slice of the MPR volume. In this step, the intersection points of each transversal slice with the earlier obtained longitudinal contours were used to guide the contour detection. Additionally, the vessel wall borders were detected in these longitudinal images by a similar MCA with a different model. The applied model was based on several pre-defined constraints concerning the location of longitudinal vessel wall contours; contours were positioned outside the detected longitudinal lumen contours and the regions with high intensity values (e.g. calcified regions) were included according to a relative weighting scheme. Consecutively, transversal vessel wall contours were fitted on the transversal slices using the intersection of the longitudinal contours with each slice as attraction point. These automated processing steps were independent from the standard viewing settings (window level 1024, width 0).