REFERENCES FOR FIGURE 5
Figure 5.
Comparisons of G-matrices using the Flury hierarchy (Phillips and Arnold 1999), published as of
the end of 2007 (further details provided in spreadsheet). The outcomes of statistical
comparisons are classified into five categories: matrices equal; matrices proportional
(eigenvectors and ratios of eigenvalues equal, but absolute size of eigenvalues different);
matrices with all principal components, or eigenvectors, shared (full CPC); matrices with at least
one but not all principal components shared (partial CPC); and unrelated. Comparisons are
divided into those among (a) experimental treatments within taxa, (b) sexes within taxa, (c)
natural populations within taxa, and (d) species (comparisons representing an interaction of more
than one of these factors were excluded). Many studies conducted multiple pairwise
comparisons and so are reflected in multiple counts.
References cited
Ackerman, R. R. 2002. Patterns of covariation in the hominoid craniofacial skeleton:
implications for paleoanthropological models. Journal of Human Evolution 43:167-187.
Ackerman, R. R., and J. M. Cheverud. 2000. Phenotypic covariance structure in tamarins
(genus Saguinus): a comparison of variation patterns using matrix correlation and
common principal component analysis. American Journal of Physical Anthropology
111:489-501.
Akimoto, S.-i. 2006. Inbreeding depression, increased phenotypic variance, and a trade-off
between gonads and appendages in selfed progeny of the aphid Prociphilus oriens.
Evolution 60:77-86.
Alonso, C., and C. M. Herrera. 2003. Developmental and spatial covariation of nutrients in
growing leaves of Daphne laureola and their relationships with herbivory. New
Phytologist 159:645-656.
Arnold, S. J., and P. C. Phillips. 1999. Hierarchical comparison of genetic variance-covariance
matrices. II. Coastal-inland divergence in the garter snake, Thamnophis elegans.
Evolution 53:1516-1527.
Ashman, T.-L. 2003. Constraints on the evolution of males and sexual dimorphism: field
estimates of genetic architecture of reproductive traits in three populations of
gynodioecious Fragaria virginiana. Evolution 57:2012-2025.
Ashman, T.-L. 2005. The limits on sexual dimorphism in vegetative traits in a gynodioecious
plant. American Naturalist 166:S5-S16.
Atchley, W. R., D. E. Cowley, C. Vogl, and T. McLellan. 1992. Evolutionary divergence, shape
change, and genetic correlation structure in the rodent mandible. Systematic Biology
41:196-221.
Badyaev, A. V., and G. E. Hill. 2000. The evolution of sexual dimorphism in the house finch. I.
Population divergence in morphological covariance structure. Evolution 54:1784-1794.
Baker, R. H., and G. S. Wilkinson. 2003. Phylogenetic analysis of correlation structure in stalkeyed flies (Diasemopsis, Diopsidae). Evolution 57:87-103.
Bégin, M., and D. A. Roff. 2001. An analysis of G matrix variation in two closely related
cricket species, Gryllus firmus and G. pennsylvanicus. Journal of Evolutionary Biology
14:1-13.
Bégin, M., and D. A. Roff. 2003. The constancy of the G matrix through species divergence
and the effects of quantitative genetic constraints on phenotypic evolution: a case study in
crickets. Evolution 57:1107-1120.
Bégin, M., and D. A. Roff. 2004. From micro- to macroevolution through quantitative genetic
variation: positive evidence from field crickets. Evolution 58:2287-2304.
Bégin, M., D. A. Roff, and V. Debat. 2004. The effect of temperature and wing morphology on
quantitative genetic variation in the cricket Gryllus firmus, with an appendix examining
the statistical properties of the Jackknife-MANOVA method of matrix comparison.
Journal of Evolutionary Biology 17:1255-1267.
Bégin, M., and D. J. Schoen. 2007. Transposable elements, mutational correlations, and
population divergence in Caenorhabditis elegans. Evolution 61:1062-1070.
Blows, M. W., S. F. Chenoweth, and E. Hine. 2004. Orientation of the genetic variancecovariance matrix and the fitness surface for multiple male sexually selected traits.
American Naturalist 163:329-340.
Blows, M. W., and M. Higgie. 2003. Genetic constraints on the evolution of mate recognition
under natural selection. American Naturalist 161:240-253.
Bonser, S. P., and M. A. Geber. 2005. Growth form evolution and shifting habitat specialization
in annual plants. Journal of Evolutionary Biology 18:1009-1018.
Brock, M. T., and C. Weinig. 2007. Plasticity and environment-specific covariances: an
investigation of floral-vegetative and within flower correlations. Evolution 61:2913-2924.
Brodie, E. D., III. 1992. Correlational selection for color pattern and antipredator behavior in
the garter snake Thamnophis ordinoides. Evolution 46:1284-1298.
Brodie, E. D., III. 1993. Homogeneity of the genetic variance-covariance matrix for
antipredator traits in two natural populations of the garter snake Thamnophis ordinoides.
Evolution 47:844-854.
Camara, M. D., C. A. Ancell, and M. Pigliucci. 2000. Induced mutations: a novel tool to study
phenotypic integration and evolutionary constraints in Arabidopsis thaliana.
Evolutionary Ecology Research 2:1009-1029.
Camara, M. D., and M. Pigliucci. 1999. Mutational contributions to genetic variance-covariance
matrices: an experimental approach using induced mutations in Arabidopsis thaliana.
Evolution 53:1692-1703.
Cano, J. M., A. Laurila, J. Palo, and J. Merila. 2004. Population differentiation in G matrix
structure due to natural selection in Rana temporaria. Evolution 58:2013-2020.
Carr, D. E., and C. B. Fenster. 1994. Levels of genetic variation and covariation for Mimulus
(Scrophulariaceae) floral traits. Heredity 72:606-618.
Caruso, C. M., H. Maherali, A. Mikulyuk, K. Carlson, and R. B. Jackson. 2005. Genetic
variance and covariance for physiological traits in Lobelia: are there constraints on
adaptive evolution? Evolution 59:826-837.
Cheverud, J. M., and G. Marroig. 2007. Comparing covariance matrices: random skewers
method compared to the common principal components model. Genetics and Molecular
Biology 30:461-469.
Conner, J. K. 2002. Genetic mechanisms of floral trait correlations in a natural population.
Nature 420:407-410.
Conner, J. K., R. Franks, and C. Stewart. 2003. Expression of additive genetic variances and
covariances for wild radish floral traits: comparison between field and greenhouse
experiments. Evolution 57:487-495.
Dodd, R. S., Z. A. Rafii, and A. Bousquet-Melou. 2000. Evolutionary divergence in the PanAtlantic mangrove Avicennia germinans. New Phytologist 145:115-125.
Donohue, K., E. H. Pyle, D. Messiqua, M. S. Heschel, and J. Schmitt. 2000. Density
dependence and population differentiation of genetic architecture in Impatiens capensis
in natural environments. Evolution 54:1969-1981.
Dworkin, I., A. Palsson, and G. Gibson. 2005. Replication of an egrf-wing shape association in
a wild-caught cohort of Drosophila melanogaster. Genetics 169:2115-2125.
Estes, S., and P. C. Phillips. 2006. Variation in pleiotropy and the mutational underpinnings of
the G-matrix. Evolution 60:2655-2660.
Fong, D. W. 1989. Morphological evolution of the amphipod Gammarus minus in caves:
quantitative genetic analysis. American Midland Naturalist 121:361-378.
Fox, C. W., M. L. Bush, D. A. Roff, and W. G. Wallin. 2004. Evolutionary genetics of lifespan
and mortality rates in two populations of the sand beetle, Callosobruchus maculatus.
Heredity 92:170-181.
Frey, F. M. 2007. Phenotypic integration and the potential for independent color evolution in a
polymorphic spring ephemeral. American Journal of Botany 94:437-444.
Game, E. T., and M. J. Caley. 2006. The stability of P in coral reef fishes. Evolution 60:814823.
Goheen, J. R., R. K. Swihart, and J. H. Robins. 2003. The anatomy of a range expansion:
changes in cranial morphology and rates of energy extraction for North American red
squirrels from different latitudes. Oikos 102:33-44.
Gonzalez-Jose, R., S. Van der Molen, E. Gonzalez-Perez, and M. Hernandez. 2004. Patterns of
phenotypic covariation and correlation in modern humans as viewed from morphological
integration. American Journal of Physical Anthropology 123:69-77.
Guntrip, J., R. M. Sibly, and G. J. Holloway. 1997. The effect of novel environment and sex on
the additive genetic variation and covariation in and between emergence body weight and
development period in the cowpea weevil, Callosobruchus maculatus (Coleoptera,
Bruchidae). Heredity 78:158-165.
Hadfield, J. D., A. Nutall, D. Osorio, and I. P. F. Owens. 2007. Testing the phenotypic gambit:
phenotypic, genetic and environmental correlations of colour. Journal of Evolutionary
Biology 20:549-557.
Harmon, L. J., and R. Gibson. 2006. Multivariate phenotypic evolution among island and
mainland populations of the ornate day gecko, Phelsuma ornata. Evolution 60:26222632.
Higgie, M., and M. W. Blows. 2007. Are traits that experience reinforcement also under sexual
selection? American Naturalist 170:409-420.
Holloway, G. J., P. W. de Jong, and M. Ottenheim. 1993. The genetics and cost of chemical
defense in the two-spot ladybird (Adalia bipunctata L.). Evolution 47:1229-1239.
House, C. M., and L. W. Simmons. 2005. The evolution of male genitalia: patterns of genetic
variation and covariation in the genital sclerites of the dung beetle Onthophagus taurus.
Journal of Evolutionary Biology 18:1281-1292.
Jensen, H., B.-E. Saether, T. H. Ringsby, J. Tufto, S. C. Griffith, and H. Ellegren. 2003. Sexual
variation in heritability and genetic correlations of morphological traits in house sparrow
(Passer domesticus). Journal of Evolutionary Biology 16:1296-1307.
Jernigan, R. W., D. C. Culver, and D. W. Fong. 1994. The dual role of selection and
evolutionary history as reflected in genetic correlations. Evolution 48:587-596.
Kingsolver, J. G., J. G. Shlichta, G. J. Ragland, and K. R. Massie. 2006. Thermal reaction
norms for caterpillar growth depend on diet. Evolutionary Ecology Research 8:703-715.
Kohn, L. A. P., and W. R. Atchley. 1988. How similar are genetic correlation structures data
from mice and rats. Evolution 42:467-481.
Kudoh, H., T. Sugawara, S. Wu, and J. Murata. 2001. Morph-specific correlations between
floral traits in a distylous Ophiorrhiza napoensis (Rubiaceae) population in southern
China. Journal of Tropical Ecology 17:719-728.
Lofsvold, D. 1986. Quantitative genetics of morphological differentiation in Peromyscus. I.
Tests of the homogeneity of genetic covariance structure among species and subspecies.
Evolution 40:559-573.
Marroig, G., and J. M. Cheverud. 2001. A comparison of phenotypic variation and covariation
patterns and the role of phylogeny, ecology, and ontogeny during cranial evolution of
New World monkeys. Evolution 55:2576-2600.
Marroig, G., M. De Vivo, and J. M. Cheverud. 2004. Cranial evolution in sakis (Pithecia,
Platyrrhini) II: evolutionary processes and morphological integration. Journal of
Evolutionary Biology 17:144-155.
McCoy, M. W. 2007. Conspecific density determines the magnitude and character of predatorinduced phenotype. Oecologia 153:871-878.
McDaniel, S. F. 2005. Genetic correlations do not constrain the evolution of sexual dimorphism
in the moss Ceratodon purpureus. Evolution 59:2353-2361.
McGuigan, K., and M. W. Blows. 2007. The phenotypic and genetic covariance structure of
drosophilid wings. Evolution 61:902-911.
Paulsen, S. M. 1996. Quantitative genetics of the wing color pattern in the buckeye butterfly
(Precis coenia and Precis evarete): evidence against the constancy of G. Evolution
50:1585-1597.
Pfrender, M. E. 1998. Evolutionary dynamics of molecular and quantitative genetic variation in
ephemeral pond populations of Daphnia pulex. University of Oregon, Eugene, OR.
Pfrender, M. E., and M. Lynch. 2000. Quantitative genetic variation in Daphnia: temporal
changes in genetic architecture. Evolution 54:1502-1509.
Phillips, P. C., M. C. Whitlock, and K. Fowler. 2001. Inbreeding changes the shape of the
genetic covariance matrix in Drosophila melanogaster. Genetics 158:1137-1145.
Pigliucci, M. 2002. Touchy and bushy: phenotypic plasticity and integration in response to
wind stimulation in Arabidopsis thaliana. International Journal of Plant Science 163:399408.
Pigliucci, M., K. Cammell, and J. Schmitt. 1999. Evolution of phenotypic plasticity a
comparative approach in the phylogenetic neighbourhood of Arabidopsis thaliana.
Journal of Evolutionary Biology 12:779-791.
Pigliucci, M., and K. Hayden. 2001. Phenotypic plasticity is the major determinant of changes
in phenotypic integration in Arabidopsis. New Phytologist 152:419-430.
Pigliucci, M., and A. Kolodynska. 2002a. Phenotypic plasticity to light intensity in Arabidopsis
thaliana: invariance of reaction norms and phenotypic integration. Evolutionary Ecology
16:27-47.
Pigliucci, M., and A. Kolodynska. 2002b. Phenotypic plasticity and integration in response to
flooded conditions in natural accessions of Arabidopsis thaliana (L.) Heynh
(Brassicaceae). Annals of Botany 90:199-207.
Platenkamp, G. A. J., and R. G. Shaw. 1992. Environmental and genetic constraints on adaptive
population differentiation in Anthoxanthum odoratum. Evolution 46:341-352.
Podolsky, R. H., R. G. Shaw, and F. H. Shaw. 1997. Populations structure of morphological
traits in Clarkia dudleyana. II. Constancy of within-population genetic variance.
Evolution 51:1785-1796.
Polly, P. D. 2005. Development and phenotypic correlations: the evolution of tooth shape in
Sorex araneus. Evolution and Development 7:29-41.
Porter, A. H., and E. J. Levin. 2007. Parallel evolution in sympatric, hybridizing species:
performance of Colias butterflies on their introduced host plants. Entomologia
Experimentalis et Applicata 124:77-99.
Pressoir, G., and J. Berthaud. 2004. Population structure and strong divergent selection shape
phenotypic diversification in maize landraces. Heredity 92:95-101.
Renaud, S., J.-C. Auffray, and J. Michaux. 2006. Conserved phenotypic variation patterns,
evolution along lines of least resistance, and departure due to selection in fossil rodents.
Evolution 60:1701-1717.
Revell, L. J., L. J. Harmon, R. B. Langerhans, and J. J. Kolbe. 2007. A phylogenetic approach
to determining the importance of constraint on phenotypic evolution in the neotropical
lizard Anolis cristatellus. Evolutionary Ecology Research 9:261-282.
Roff, D. A. 2002. Comparing G matrices: a MANOVA approach. Evolution 56:1286-1291.
Roff, D. A., and T. Mousseau. 2005. The evolution of the phenotypic covariance matrix:
evidence for selection and drift in Melanoplus. Journal of Evolutionary Biology 18:11041114.
Roff, D. A., T. Mousseau, A. P. Møller, F. de Lope, and N. Saino. 2004. Geographic variation
in the G matrices of wild populations of the barn swallow. Heredity 93:8-14.
Roff, D. A., and T. A. Mousseau. 1999. Does natural selection alter genetic architecture? An
evaluation of quantitative genetic variance among populations of Allonemobius socius
and A. fasciatus. Journal of Evolutionary Biology 12:361-369.
Roff, D. A., T. A. Mousseau, and D. J. Howard. 1999. Variation in genetic architecture of
calling song among populations of Allonemobius socius, A. fasciatus, and a hybrid
population: drift or selection? Evolution 53:216-224.
Rolff, J., S. A. O. Armitage, and D. W. Coltman. 2005. Genetic constraints and sexual
dimorphism in immune defense. Evolution 59:1844-1850.
Rosenthal, D. M., L. H. Rieseberg, and L. A. Donovan. 2005. Re-creating ancient hybrid
species' complex phenotypes from early-generation synthetic hybrids: three examples
using wild sunflowers. American Naturalist 166:26-41.
Schmidt, P. S., A. B. Paaby, and M. S. Heschel. 2005. Genetic variance for diapause expression
and associated life histories in Drosophila melanogaster. Evolution 59:2616-2625.
Service, P. M. 2000. The genetic structure of female life history in D. melanogaster:
comparisons among populations. Genet. Res. Camb. 75:153-166.
Shaw, F. H., R. G. Shaw, G. S. Wilkinson, and M. Turelli. 1995. Changes in genetic variances
and covariances: G whiz! Evolution 49:1260-1267.
Sládek, V., E. Trinkaus, A. Sefcáková, and R. Halouzka. 2002. Morphological affinities of the
Sal'a 1 frontal bone. Journal of Human Evolution 43:787-815.
Spitze, K., J. Burnson, and M. Lynch. 1991. The covariance structure of life-history characters
in Daphnia pulex. Evolution 45:1081-1090.
Steppan, S. J. 1997. Phylogenetic analysis of phenotypic covariance structure. I. Contrasting
results from matrix correlation and common principal component analysis. Evolution
51:571-586.
Steven, J. C., L. F. Delph, and E. D. Brodie, III. 2007. Sexual dimorphism in the quantitativegenetic architecture of floral, leaf, and allocation traits in Silene latifolia. Evolution
61:42-57.
Stinchcombe, J. R., and J. Schmitt. 2006. Ecosystem engineers as selective agents: the effects
of leaf litter on emergence time and early growth in Impatiens capensis. Ecology Letters
9:258-270.
Tatsuta, H., and S.-i. Akimoto. 2000. Variability in phenotypic covariance structure of female
genitalia in the brachypterous grasshopper Podisma sapporensis (Orthoptera: Acrididae:
Podisminae). Annals of the Entomological Society of America 93:127-132.
Volis, S., K. J. F. Verhoeven, and S. Mendlinger. 2004. Phenotypic selection and regulation of
reproduction in different environments in wild barley. Journal of Evolutionary Biology
17:1121-1131.
Waldmann, P., and S. Andersson. 2000. Comparison of genetic (co)variance matrices within
and between Scabiosa canescens and S. columbaria. Journal of Evolutionary Biology
13:826-835.
Weller, S. G., A. K. Sakai, T. M. Culley, D. R. Campbell, and A. K. Dunbar-Wallis. 2006.
Predicting the pathway to wind pollination: heritabilities and genetic correlations of
inflorescence traits associated with wind pollination in Schiedea salicaria
(Caryophyllaceae). Journal of Evolutionary Biology 19:331-342.
Weller, S. G., A. K. Sakai, T. M. Culley, D. R. Campbell, P. Ngo, and A. K. Dunbar-Wallis.
2007. Sexually dimorphic inflorescence traits in a wind-pollinated species: heritabilities
and genetic correlations in Schiedea adamantis (Caryophyllaceae). American Journal of
Botany 94:1716-1725.
Whitlock, M. C., P. C. Phillips, and K. Fowler. 2002. Persistence of changes in the genetic
covariance matrix after a bottleneck. Evolution 56:1968-1975.
Widén, B., S. Andersson, G.-Y. Rao, and M. Widén. 2002. Population divergence of genetic
(co)variance matrices in a subdivided plant species, Brassica cretica. Journal of
Evolutionary Biology 15:961-970.
Wilkinson, G. S., K. Fowler, and L. Partridge. 1990. Resistance of genetic correlation structure
to directional selection in Drosophila melanogaster. Evolution 44:1990-2003.