Effects of prenyl pyrophosphates on the binding og S-ras proteins with KSR Introduction: Ras proteins are membrane-associated small guanine nucleotides binding proteins. In mam-mals, four isoforms of Ras exist:H-Ras,N-Ras,KA -Ras, and KB -Ras. These are products of three genes.KA -Ras and KB -Ras are splice variants of the same gene. Among them,the protein sequences are 80% identical with major differences residing in their carboxyl termini,including the CAAX (C,cysteine; A,an aliphatic amino acid)motifs of prenylation. Ras is modified by prenylation to increase its intrinsic affinity for the plasma membranes at which they participate in signal transduction.The addition of isoprenoid groups,such as geranylger-anyl (20-carbon)and farnesyl groups (15-carbon), is determined by the X residue of the carboxyl terminal CAAX of proteins. If X is leucine or phenylalanine,the protein is geranylgeranylated, if X is methione, serine, alanine, or glutamine, the protein is farnesylated .All mamma-lian Ras proteins are prenylated by protein farnesyltransferase. However,KB -Ras is the only exception.KB –Ras can be acylated by protein geranylgeranyltrans-ferase I (PGGTase I). The reason for the existence of two types of prenylation in cells is not clear. The kinase suppressor of Ras (KSR)has been genetically identified as an important mediator of Ras-dependent signals either upstream of or parallel to Raf in Drosophila melanoga-ster and Caenorhabditis elegans.Expression of small amounts of KSR cooperates with Ras for Xenopus oocyte maturation,whereas a high level of expression results in Grant sponsors. Mammalian forms of KSR-1 have been identified on the basis of sequence homology.A catalytic role for KSR has been suggested by a report that Thr 269 is the major c-Raf-1 site activated and phosphorylated by KSR. On the other hand,a growing body of evidence indicates a scaffolding role for KSR in the mitogen-activated protein kinase (MAPK)pathway.KSR has been shown to interact with Raf-1,MEK,and MAPK in co-immunopreci-pitation experiments and yeast two-hybrid assays. Problem: What are the effects of geranylgeranyl pyrophosphate compare to farnesyl pyr-ophosphate on the binding of Ras with KSR. Solution: the reserchers used a recombi-nant ras-encoded p25 fusion protein of shrimp Penaeus japonicus (S-Ras)which shares 85% homology with mammalian KB -Ras protein. S-Ras is prenylated exclusively at CAAX by PGGTase I of shrimp but acylated by PFTase of mammals as well. cells were transformed by transfection with DNA encoding the mutated ras(Q61 K)from shrimp Penaeus japonicus.On a Western blot,the kinase suppressor of Ras (KSR)in the membrane fraction was expressed at slightly reduced level as compared to that of the untransformed cells.To understand this in more detail,the interaction of the bacterially expressed shrimp Ras (S-Ras)with KSR was investigated using KSR purified from mice brains.SDS-polyacrylamide gel electrophoresis and Western blot analysis revealed that the monomers of the purified KSR have a relative molecular mass of 60,000.Purified KSR was found to bind with digoxigenylated S-ras-encoding fusion protein (Dig-S-Ras)with high affinity in the absence of ATP,and the binding activity of KSR was sustained upon phosphorylation of Dig-S-Ras with mitogen-activated protein kinase (MAPK).The association of purified KSR with S-Ras was confirmed.Differences between the effects of farnesyl pyrophosphate and geranylgeranyl pyrophosphate on the binding of SRas with the purified KSR were assessed.Densitometer analysis revealed that at nanogram concentration,farnesyl pyrophosphate inhibited the binding of S-Ras with KSR competently,but geranylgeranyl pyrophosphate did not.The present study provides the evidence that decrease of the concentration of farnesyl pyrophosphate to sub-microgram levels lower the affinity of Ras proteins with KSR in the signaling pathway. Summery: The mutant S-Ras(Q61 K)protein has been shown to transform mammalian BALB/3T3 cells.the results showed that farnesyl pyrophosphate at sub-micro-gram levels inhibited the recruitment of SRas with KSR,but geranylgeranyl pyrophosphate did not.These findings indicate that the prenylation with farnesyl pyrophosphate at the C-termini of shrimp Ras provides a mechanism to exhaust the available amounts of farnesyl pyrophosphate,and Ras is routed away from KSR and is diverted to aberrant growth,such as transformation.