BIOGRAPHICAL SKETCH Provide the following information for the key personnel and other significant contributors in the order listed on Form Page 2. Follow this format for each person. DO NOT EXCEED FOUR PAGES. NAME POSITION TITLE Griffin, Timothy J. Associate Professor Director, Center for Mass Spectrometry and Proteomics eRA COMMONS USER NAME TGRIFFIN EDUCATION/TRAINING (Begin with baccalaureate or other initial professional education, such as nursing, and include postdoctoral training.) INSTITUTION AND LOCATION St. Olaf College, Northfield, MN University of Wisconsin, Madison, WI University of Washington, Seattle, WA Institute for Systems Biology, Seattle, WA DEGREE (if applicable) YEAR(s) B.A. Ph.D. Postdoctoral Postdoctoral 1994 1999 1999-2001 2001-2003 FIELD OF STUDY Chemistry and Mathematics Chemistry Proteomics Proteomics A. Personal Statement Dr. Griffin’s research involves the development and application of mass spectrometry-based tools to study proteins and proteomes. He pioneered mass spectrometry-based methods for genomic applications as a graduate student, before post-doctoral training under Dr. Ruedi Aebersold, where he published several seminal papers in the emerging field of quantitative proteomics. Since his appointment as an independent investigator, he has continued to pioneer methods (analytical and computational) enabling more sensitive and accurate mass spectrometry-based proteomic studies in complex biological systems. He has applied these technologies to numerous biomedical projects, notably in the area of oral cancer and salivary protein biomarkers and also oxidative stress-related post-translational modifications. B. Positions and Honors Positions 1992-1994 Research Intern, USDA Forest Products Laboratory, Madison, WI 1995-1999 Research Assistant, Smith Lab, Dept of Chemistry, University of Wisconsin-Madison 1999-2001 Senior Research Fellow, Aebersold Lab, Dept. of Molecular Biotechnology, University of Washington, Seattle, WA 2001-2003 Postdoctoral Research Associate, Aebersold Lab, Institute for Systems Biology, Seattle, WA 2003-2009 Assistant Professor, Department of Biochemistry, Molecular Biology, & Biophysics, University of Minnesota, Minneapolis, MN 2009Associate Professor, Department of Biochemistry, Molecular Biology, & Biophysics, University of Minnesota, Minneapolis, MN; Associate Director, Center for Mass Spectrometry and Proteomics, University of Minnesota 2012Director, Center for Mass Spectrometry and Proteomics, University of Minnesota Other Experience and Professional Memberships Phi Beta Kappa American Chemical Society American Society for Mass Spectrometry American Society for Biochemistry and Molecular Biology Grant review activities (examples): NCI Innovative Molecular Analysis Technologies (IMAT) for Cancer Research (2008-present), Research Resource P41 review panel (NCRR, 2009), NCI Early Detection Research Network Biomarker Development Laboratory review panel (2010), NSF Graduate Research Fellowship Program Honors 1990-1994 1997 1998-1999 1999-2001 2005 2010-2013 Danov Scholarship, St. Olaf College Pharmacia/Upjohn Charles N. Reilly Award for outstanding research in analytical chemistry Procter and Gamble Fellowship, Department of Chemistry, University of Wisconsin-Madison NIH Genomic Sciences Postdoctoral Fellowship, Department of Molecular Biotechnology, University of Washington Eli Lilly Young Investigator Award in Analytical Chemistry McKnight Presidential Fellow, University of Minnesota C. Peer Reviewed Publications 1. Griffin, T.J., Tang, W., and Smith, L.M. (1997) Genetic analysis by peptide nucleic acid affinity MALDITOF mass spectrometry. Nature Biotechnol., 15, 1368-1372. PMID: 9415888 2. Griffin, T.J. and Smith, L.M. (1998) An approach to predicting the stabilities of peptide nucleic acid:DNA duplexes. Anal. Biochem., 260, 56-63. PMID: 9648653 3. Griffin, T.J., Hall, J.G., Prudent, J.R., and Smith, L.M. (1999) Direct genetic analysis by matrix-assisted laser desorption/ionization mass spectrometry. Proc. Natl. Acad. Sci. USA, 96, 6301-6306. PMID: 10339582 4. Griffin, T.J. and Smith, L.M. (2000) Genetic identification by mass spectrometric analysis of singlenucleotide polymorphisms: ternary encoding of genotypes. Anal. Chem., 72, 3298-3302. PMID: 10939403 5. Griffin, T.J., Loboda, A., Gygi, S.P., Rist, B., Standing, K.G., and Aebersold, R. (2001) Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer. Anal. Chem., 73, 978986. PMID: 11289445 6. Griffin, T.J., Han, D.K.M., Gygi, S.P., Rist, B., Lee, H., Parker, K.C., and Aebersold, R. (2001) Toward a high-throughput approach to quantitative proteomic analysis: expression-dependent protein identification by mass spectrometry. J. Am. Soc. Mass Spectrom., 12, 1238-1246. PMID: 11766750 7. Gygi, S.P., Rist, B., Griffin, T.J., Eng, J., and Aebersold, R. (2002) Proteome analysis of lowabundance proteins using multidimensional chromatography and isotope-coded affinity tags. J. Proteome Res., 1, 47-54. PMID: 12643526 8. Griffin, T.J., Gygi, S.P., Ideker, T., Rist, B., Eng, J., Hood, L., and Aebersold, R. (2002) Complementary profiling of gene expression at the transcriptome and proteome levels in S. cerevisiae. Mol. Cell. Proteomics 1, 323-333. PMID: 12096114 9. Lee, H., Griffin, T.J., Gygi, S.P., Rist, B. and Aebersold, R. (2002) Development of a multiplexed microcapillary liquid chromatography system for high throughput proteome analysis. Anal. Chem. 74, 4353-4360. PMID: 12236342 10. Griffin, T.J., Lock, C.M., Li, X., Patel, A., Chervetsova, I., Lee, H., Wright, M.E., Ranish, J.A., Chen, S.S., and Aebersold, R. (2003) Abundance ratio-dependent proteomic analysis by mass spectrometry. Anal Chem. 75 867-874. PMID: 12622378 11. Xie, H., Bandhakavi, S. and Griffin, T.J. (2005) Evaluating Preparative Isoelectric Focusing of Complex Peptide Mixtures for Mass Spectrometry-Based Proteomics: A Case Study in Profiling ChromatinEnriched Subcellular Fractions in S. cerevisiae, Anal. Chem. 77, 3198-3207. PMID: 15889909 12. Xie, H., Rhodus, N.L., Griffin, R.J., Carlis, J.V. and Griffin, T.J. (2005) A catalogue of human saliva proteins identified using Free Flow Electrophoresis and Tandem Mass Spectrometry. Mol Cellular Proteomics 4, 1826-1830. PMID: 16103422 13. Xie, H. and Griffin, T.J. (2006) The Trade-Off Between Sensitivity and False Positive Peptide Sequence Matches Using a 2-D Linear Ion Trap for Tandem Mass Spectrometry-Based Proteomics, J Proteome Res 5, 1003-9. PMID: 16602709 14. Vander Haar, E., Lee, S., Bandhakavi, S., Griffin, T.J. and Kim, D.H. (2007) Integration of Nutrient and Insulin Signaling Through the mTOR-raptor Complex, Nature Cell Biology 9, 316-23. PMID: 17277771 15. Meany, D., Xie, H., Thompson, L.V., Arriaga, E.A. and Griffin, T.J. (2007) Identification of carbonylated mitochondrial proteins from rat muscle using affinity chromatography-stable isotope labeling and tandem mass spectrometry, Proteomics 7, 1150-1163. Also featured article in “In This Issue” commentary section. PMID: 17390297 16. Grimsrud, P.A., Griffin, T.J., Picklo, M.J. and Bernlohr, D.A. (2007) Carbonylation of adipose proteins in obesity and insulin resistance: identification of adipocyte fatty acid-binding protein as a cellular target of 4-hydroxynonenal, Mol Cellular Proteomics, 6, 624-637. PMID: 17205980 17. Roe, M.R. Xie, H., Bandhakavi, S. and Griffin, T.J. (2007) Proteomic Mapping of 4-Hydroxynonenal Protein Modification Sites by Solid-Phase Hydrazide Chemistry and Mass Spectrometry, Anal Chem, 79, 3747-3756. PMID: 17437329 18. Xie, H, Bandhakavi, S., Roe, M.R. and Griffin, T.J. (2007) Preparative peptide isoelectric focusing as a tool for improving the identification of lysine acetylated peptides from complex mixtures, J Proteome Res, 6, 2019-2026. PMID: 17397211 19. Woo, S.Y., Kim, D.H., Jun C.B., Kim Y.M., Vander Haar E., Lee S.I., Hegg J.W., Bandhakavi S., Griffin T.J., Kim D.H. (2007) PRR5, a novel component of mTOR complex 2, regulates PDGFRbeta expression and signaling. J. Biol. Chem., 35, 25604-12. PMID: 17599906 20. Griffin, T.J., Xie, H., Bandhakavi, S., Popko, J., Mohan, A., Carlis, J.V., and Higgins, L. (2007) iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer, J. Proteome Research, 6, 4200-4209. PMID: 17902639 21. Xie, H., Onsongo, G., Popko, J., de Jong, E.P., Cao, J., Carlis, J.V., Griffin, R.J., Rhodus, N.L. and Griffin, T.J. (2008) Proteomic analysis of cells in whole saliva from oral cancer patients via valueadded three-dimensional peptide fractionation and tandem mass spectrometry, Mol Cellular Proteomics, 7, 486-98. PMID: 18045803 22. Bandhakavi, S., Xie, H., O’Callaghan, B., Sakurai, H., Kim, D.H., and Griffin, T.J. (2008) Hsf1 activation inhibits rapamycin resistance and TOR signaling in yeast revealed by combined proteomic and genetic analysis, PLoS ONE, 3, e1598. PMID: 18270585 23. Jayapal, K.P., Sui, S., Philip, R.J., Kok, Y.J., Yap, M.G., Sherman, D.H., Griffin, T.J. and Hu, W.S. (2008) Uncovering genes with divergent mRNA-protein dynamics in Streptomyces coelicolor, PLoS One, 3, e2097. PMID: 18461186 24. Hohberger, L., Wuertz, B.R.K, Xie, H, Griffin, T., and Ondrey, F. (2008) TNF alpha drives MMP9 in oral carcinogenesis, Laryngoscope. 118, 1395-9. PMID: 18496150 25. Feng, J., Xie, H., Meany, D.L., Thompson, L.V., Arriaga, E.A. and Griffin, T.J. (2008) Quantitative Proteomic Profiling of Muscle-and Age-Dependent Protein Carbonylation in Rat Skeletal Muscle Mitochondria, Journal of Gerontology: Biological Sciences, 63, 1137-52. PMID: 19038828 26. Onsongo, G., Xie, H., Griffin, T.J. Carlis, J.V. (2008) Generating GO Slim Using Relational Database Management Systems to Support Proteomics Analysis: (IEEE Symposium on Computer-Based Medical Systems. 2008: 215 - 217) 27. Yan, W., Apweiler, R., Balgley, B., Boontheung, P., Bundy, J.L., Cargile, B.J., Cole, S., Fang, X., Gonzalez-Begne, M., Griffin, T.J., et al (2009) Systematic comparison of the human saliva and plasma proteomes, Proteomics Clin. Appl., 3, 116-134. PMID: 19898684 28. Bandhakavi, S., Stone, M.D., Onsongo, G., Van Riper, S.K., and Griffin, T.J. (2009) A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva, J Proteome Res. 8, 5590-600. PMID: 19813771 29. Bandhakavi S., Kim Y.M., Ro S.H., Xie H., Onsongo G., Jun C.B., Kim D.H., and Griffin T.J. (2010) Quantitative nuclear proteomics identifies mTOR regulation of DNA damage response. Mol Cellular Proteomics, 9, 403-14. PMID: 19955088 30. Rudney, J.D, Xie, H., Rhodus, N.L., Ondrey, F.G. and Griffin, T.J. (2010) A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry. Molecular Oral Microbiology, 25, 38-49. 31. Jayapal, K.P., Siguang, S., Philp, R.J., Kok, Y.J., Yap, M.G.S., Griffin, T.J. and Hu, W.S. (2010) A multi-tagging proteomic strategy to estimate protein turnover rates in dynamic systems, J Proteome Res, 9, 2087-97. 32. Roe, M.R., McGowan, T.F., Thompson, L.V. and Griffin, T.J. (2010) Targeted 18O-labeling for improved proteomic analysis of carbonylated peptides by mass spectrometry, J Am Soc Mass Spectrom, 21, 1190–1203. PMID: 20434358 33. Onsongo, G., Xi, H., Griffin, T.J. and Carlis, J.V. (2010) Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data, ACM International Conference on Bioinformatics and Computational Biology, accepted as full paper 34. de Jong, E.P., Xie, H., Onsongo, G., Stone, M.D., Chen, X., Kooren, J.A., Refsland, E.W., Griffin, R.J., Ondrey, F.G., Wu, B., Le, C.T., Rhodus, N.L., Carlis, J.V. and Griffin, T.J. (2010) Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions, PloS ONE, 5, e11148. 35. Yee J.C., Jacob N.M., Jayapal K.P., Kok Y.J., Philp R., Griffin T.J., Hu W.S. (2010) Global assessment of protein turnover in recombinant antibody producing Myeloma cells. J Biotechnol., 148:182-93. 36. Onsongo, G., Stone, M.D., Van Riper, S.D., Chilton, J., Wu, B., Higgins, L., Lund, T.C., Carlis, J.V. and Griffin, T.J. (2010) LTQ-iQuant: A freely-available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments, Proteomics, 10, 3533-8. 37. Stone, M.D., Odland, R.M., McGowan, T., Onsongo, G., Tang, C., Rhodus, N.L., Jagtap, P., Bandhakavi, S. and Griffin, T.J. (2010) Proteomic Analysis of Tumor Interstitial Fluid Obtained in situ Reveals Unique Features and Diagnostic Potential, Clin Proteomics, 6, 75-82. 38. Yoder, A.R., Stone, M.D., Griffin, T.J. and Potter, L.R. (2010) Mass Spectrometric Identification of Phosphorylation Sites in Guanylyl Cyclase-A and B, Biochemistry, 49, 10137-45. 39. Bandhakavi, S., Van Riper, S.K., Tawfik, P.N., Stone, M.D., Haddad, T., Rhodus, N.L., Carlis, J.V., Griffin, T.J. (2011) Hexapeptide Libraries for Enhanced Protein PTM Identification and Relative Abundance Profiling in Whole Human Saliva. J Proteome Res., 10, 1052-61. PMID: 21142092 (PMCID in process) 40. Stone MD, Chen X, McGowan T, Bandhakavi S, Cheng B, Rhodus NL, Griffin T.J. (2011) Large-Scale Phosphoproteomics Analysis of Whole Saliva Reveals a Distinct Phosphorylation Pattern. J Proteome Res. 10, 1728-36. PMID: 21299198 (PMCID in process) 41. Kooren, JA, Rhodus, NL, Tang, C, Jagtap, PD, Horrigan, BJ, Griffin, TJ (2011) Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery. Clin Proteomics, 8: 13. PMID: 21914210 42. de Jong, E. P., Koopmeiners, J. S., and Griffin, T. J. (2011) Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery. Clin Chem Acta. 412: 2284-8. PMID: 21889499 (PMCID in process) 43. Jagtap, P., McGowan, T., Bandhakavi, S., Tu, Z. J., Seymour, S., Griffin, T.J. and Rudney, J.D. (2012) Deep metaproteomic analysis of human salivary supernatant. Proteomics 12: 992-1001. PMID: 22522805 (PMCID in process) 44. Keefe, D., Gupta, A., Feldman, D., Carlis, J.V., Keefe, S. K., Griffin, T.J. (2012) Scaling Up MultiTouch Selection and Querying: Interfaces and Applications for Combining Mobile Multi-Touch Input with Large-Scale Visualization Displays. Int. J. Human-Computer Studies 70: 703–713 45. Kim, Y. M., Stone, M. D., Hwang, T. H., Kim, Y. G., Griffin, T. J., Kim, D. H. (2012) SH3BP4 is a negative regulator of amino acid--‐Rag GTPase--‐mTORC1 signaling. Mol Cell, 46: 833-469. PMID: 22575674 46. Yoder, A. R., Dickey, D. M., Robinson, J. W., Andersland, J., Rose, B., Stone, M. D., Griffin, T. J. and Potter, L. R. (2012) A Functional Screen Provides Evidence for a Conserved, Regulatory, Juxtamembrane Phosphorylation Site in Guanylyl Cyclase-A and B, PLoSONE 7: e36747. PMCID: PMC3454319 47. Jagtap, P., Bandhakavi, S., Higgins, L., McGowan, T., Sa, R., Stone, M. D., Chilton, J., Arriaga, E. A., Seymour, S. L. and Griffin, T J. (2012) Workflow for analysis of high mass accuracy salivary dataset using MaxQuant and ProteinPilot search algorithm. Proteomics, 12: 1726-30 PMID: 22623410 48. Curtis, J.M, Hahn, W.S, Stone, M.D., Inda, J.J., Droullard, D.J., Kuzmic, J.P., Donoghue, M.A., Long, E.K., Armien, A.G., Lavandero, S., Arriaga, E.A., Griffin, T.J. and Bernlohr, D.A. (2012) Protein Carbonylation and Adipocyte Mitochondria Function. J Biol Chem, 287: 32967-80 PMID: 22822087 49. de Jong E, Griffin T.J. (2012) Online nanoscale ERLIC-MS outperforms RPLC-MS for shotgun proteomics in complex mixtures. J Proteome Res, 11, 5059-64. PMID: 22950739 50. Reed J.R., Stone M.D., Beadnell T.C., Ryu Y., Griffin T.J., Schwertfeger K.L. (2012) Fibroblast Growth Factor Receptor 1 Activation in Mammary Tumor Cells Promotes Macrophage Recruitment in a CX3CL1-Dependent Manner. PLoS One, 7, e45877 PMID: 23029290 51. Jagtap P., Goslinga J., Kooren J.A., McGowan T., Wroblewski M.S., Seymour S.L., Griffin T.J. (2013) A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies. Proteomics, 13: 1352-7. PMID: 23412978 52. Thumbigere-Math, V., Michalowicz, B.S., de Jong, E.P., Griffin, T.J., Basi, D.L., Hughes, P.J., Tsai, M.L., Swenson, K.K., Rockwell, L., and Gopalakrishnan, R. (2013) Salivary proteomics in bisphosphonate-related osteonecrosis of the jaw Oral Diseases, epub October, 31, 2013. PMID: 24286378 53. Van Riper, S.K., de Jong, E.P., Higgins, L., Carlis, J.V. and Griffin, T.J. (2014) Improved intensitybased label free quantification via proximity-based intensity normalization (PIN) J Proteome Res, 13:1281-92 54. Yang, Y., Rhodus, N.L., Ondrey, F.G., Wuertz, B.R.K., Chen, X., Zhu, Y., and Griffin, T.J. (2014) Quantitative proteomic analysis of oral brush biopsies identifies secretory leukocyte protease inhibitor as a promising, mechanism-based oral cancer biomarker PLoSONE, 9, e95389 55. Boylan, K.L.M., Afiuni-Zadeh, S., Geller, M.A., Hickey, K., Griffin, T. J., Pambuccian, S.E., and Skubitz, A.P.N. (2014) A feasibility study to identify proteins in the residual Pap test fluid of women with normal cytology by mass spectrometry-based proteomics, Clin Proteomics 11: 30. PMID: 25097468 56. Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. (2014) Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations, BMC Genomics 15: 703. PMID: 25149441 57. Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Sheynkman GM, Bandhakavi S, Smith LM, Griffin TJ. (2014) Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework. J Proteome Res, 13: 5898-908 PMID: 25301683 PMCID: PMC4261978 58. Boekel,J., Chilton, J.M., Cooke, I.R., Horvatovich, P.L., Jagtap P.D, Käll, L., Lehtiö, J., Lukasse, P., Moerland, P.D. and Griffin, T.J. (2015) Multi-omic data analysis using Galaxy, Nature Biotechnology, 33: 137–139 PMID: 25658277 Book Chapters and Reviews 1. Griffin, T.J., Tang, W., and Smith, L.M. “MALDI-TOF mass spectrometric detection of PNA hybrids for genetic analysis” in Peptide Nucleic Acids: Protocols and Applications, Nielsen, P.E. and Egholm, M., Editors. (Horizon Scientific Press, Norfolk, UK, 1999). 2. Griffin, T.J. and Smith, L.M. (2000) Single-nucleotide polymorphism analysis by MALDI-TOF mass spectrometry. Review Article. Trends Biotechnol., 18, 77-84. PMID: 10652512 3. Griffin, T.J. and Smith, L.M. “Single-Nucleotide Polymorphism Analysis by MALDI-TOF Mass Spectrometry: I. Analysis of Peptide Nucleic Acid Hybridization Probes. II. Direct Analysis of Invasive Cleavage Products” in In: Mass Spectrometry and Genomic Analysis, Housby, N. Editor. (Kluwer Academic Publishers, The Netherlands, 2001) 4. Griffin, T.J. and Aebersold, R. (2001) Advances in proteome analysis by mass spectrometry. Review Article. J. Biol. Chem., 276, 45497-45500. PMID: 11585843 5. Griffin, T.J., Goodlett, D.R., and Aebersold, R. (2001) Advances in proteome analysis by mass spectrometry. Review Article. Curr. Opin. Biotechnol., 12, 607-612. PMID: 11849943 6. Flory, M.R., Griffin, T.J., Martin, D. and Aebersold, R. (2002) Advances in quantitative proteomics using stable isotope tags. Review Article. Trends Biotechnol., 20, S23-S29. PMID: 12570156 7. Griffin, T.J., Sherman, J. and Aebersold, R. (2002) “Quantitative proteomics (ICAT)” in Encyclopedia of the Human Genome, D. N. Cooper, Editor, Nature Publishing Group: London, 959-963. 8. Roe, M.R. and Griffin, T.J. (2006) Gel-Free Mass Spectrometry-Based High Throughput Proteomics: Tools for Studying Biological Response of Proteins and Proteomes. Review Article. Proteomics, 6, 4678-4687. PMID: 16888762 9. Griffin, T.J., Seth, G., Bandhakavi S, Xie, H, Hu, WS. (2007) Advancing mammalian cell culture engineering using genome-scale technologies, Review Article, Trends in Biotechnology, 9, 401-8. PMID: 17681628 10. Grimsrud, P.A., Xie, Hongwei, Griffin, T.J. and Bernlohr, D.A. (2008) Oxidative Stress and Covalent Modification of Protein with Bioactive Aldehydes, Review Article, J Biol Chem, 283, 21837-41. PMID: 18445586 11. Bandhakavi. S., Markowski, T.W., Xie, H. and Griffin, T.J. (2011) Three dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures, Methods Mol Biol, 790: 47-56. PMID: 21948405 12. Kooren, J.A., Rhodus, N.L. and Griffin, T.J. (2011) “Emerging non-invasively collected genomic and proteomic biomarkers for the early diagnosis of oral squamous cell carcinoma (OSCC)” in Squamous Cell Carcinoma, Mortensen, D.V., Editor. Nova Science Publishers 13. Bandhakavi, S. and Griffin, T.J. (2011) Dynamic range compression: a solution for proteomic biomarker discovery? Bioanalysis, 3: 2053-6. PMID: 21942515 14. Van Riper, S.K., de Jong, E.P., Carlis, J.V. and Griffin, T.J. (2013) Mass spectrometry-based proteomics: Basic principles and emerging technologies and directions. Adv Exp Med Biol. 990: 1-35. PMID: 23378000