Supplementary Figure 1. Zebrafish neural tube morphogenesis. Rhodamine-phalloidin stained transverse sections through the developing neural tube of fixed zebrafish embryos, at the 1st to 6th somite level. The neural anlage has been outlined on the left, and cell morphologies have been highlighted on the right. Commencing around the 5-somite stage, the neural plate (a) begins to fold towards the midline, bringing apical surfaces from opposite sides of the neural plate into apposition (b). These morphogenetic movements form the neural keel (c). The lumen of the zebrafish neural tube is not established at this stage. Rather, a clear midline boundary between apposing neuroepithelial layers is lost (c,d) and cells with medio-lateral polarity can be observed intercalating across the midline. At the 12-somite stage (e), rhodamine-phalloidin staining demonstrates the initiation of a midline boundary being established in the ventral region of the neural primordium. This midline boundary develops in a ventral to dorsal direction during neural rod stages (f). By the 20-somite stage, cells in apposing neuroepithelial layers begin retracting their apical surfaces to establish the lumen of the neural tube (g). 2 Supplementary Figure 2. Maternal-zygotic trilobite phenotype. Lateral (a-c) and dorsal (a’c’) views showing WT (a), tri (b) and MZtri (c) embryos at 24 hpf. The tritk50f allele, which contains a deletion in the tri coding sequence1, was used in these studies. The MZtri phenotype is more severe than zygotic tri alone, displaying a broader medial-lateral axis (compare b’ and c’), greater compression of somites, and a more severe yolk-extension phenotype (asterisks in b and c). 1. Jessen, J. R. et al. Zebrafish trilobite identifies new roles for Strabismus in gastrulation and neuronal movements. Nat Cell Biol 4, 610-5 (2002). 2 3 Supplementary Figure 3. Generating slb;ppt germ line-replacement chimeras by 30 hpf germ cell transplantation. Production of maternal zygotic mutant embryos through use of a germ line replacement strategy has been previously described1. Donor embryos obtained from slb/+;ppt/+ intercrosses were injected with 100 pg of GFP-nos1-3’UTR mRNA to mark the primordial germ cell (PGC) population, and WT host embryos were injected with 2 ng of dead end MO to eliminate the host PGC population. To increase the efficiency of transferring PGCs from mutant donor embryos, donors were allowed to develop to 30 hpf and were then screened, by morphology, for the slb;ppt double mutant phenotype. The presumptive gonad was dissected from slb;ppt mutants and dissociated through digestion with 0.25% trypsin, 2.5% pancreatin, 1mM EDTA in PBS. GFP-positive slb;ppt germ cells were identified and then transplanted into the margin of mid-blastula staged host embryos. Despite the heterochronic nature of PGC transplantation, slb;ppt PGCs were able to repeat normal migration into the presumptive gonad in 21% of host embryos (n=197). Fertile, adult fish were obtained with germ lines completely repopulated by transplanted slb;ppt PGCs. These germ line-replacement chimeras were mated to generate large clutches of MZslb;MZppt mutant embryos. 1. Ciruna, B. et al. Production of maternal-zygotic mutant zebrafish by germ-line replacement. Proc Natl Acad Sci U S A 99, 14919-24 (2002). 3 4 Supplementary Figure 4. MZsilberblick;MZpipetail mutant phenotype. (a) The pptsk13 allele is an ENU-induced A to T mutation at the second to last nucleotide of intron 2, which changes the consensus 3’ splice site sequence between exon 2 and exon 3. Improper splicing of the pptsk13 transcript introduces a stop codon just 4 amino acids beyond the end of exon 2, leading to early truncation of the Ppt protein. pptsk13 is truncated at least 206 amino acids more Nterminal than any of the other well characterized ppt mutations, and is a presumed null allele. The pptsk13 allelle was used in all of our studies. (b-g) Lateral and frontal views demonstrating the 30 hpf phenotypes of (b) a WT embryo, (c) a zygotic slb mutant, (d) a zygotic ppt mutant, (e) a zygotic slb;ppt double mutant, (f) an MZslb;MZppt mutant embryo, and (g) an MZslb;MZppt mutant injected with 6 ng of Wnt4 MO. Of interest, maternal-zygotic mutants for the pptsk13 allele used in this study did not demonstrate dorsal patterning defects previously reported for MZpptti265 mutants1. 1. Westfall, T. A. et al. Wnt-5/pipetail functions in vertebrate axis formation as a negative regulator of Wnt/beta-catenin activity. J Cell Biol 162, 889-98 (2003). 4 5 Supplementary Figure 5. Ectopic accumulation of MZtri neural progenitor cells. Confocal micrographs through the dorsal neural keel of mRFP-labelled1 (a) WT, and (b) MZtri mutant embryos at 12-15 somite stages, and at the level of the 1st to 6th somite. The lateral extent of each neural anlage has been highlighted. Note the establishment of a midline in WT embryos (a), and the ectopic accumulation of MZtri neural progenitors (asterisk in b) at the centre of the MZtri neural primordium. Scale bars, 50 µm. 1. Megason, S. G. & Fraser, S. E. Digitizing life at the level of the cell: high-performance laserscanning microscopy and image analysis for in toto imaging of development. Mech Dev 120, 1407-20 (2003). 5 6 Supplementary Figure 6. Rescue of zebrafish Pk1 morphants by Gfp-Pk. (a-c) Phenotypic analysis of titrated gfp-Pk mRNA injections. Embryos injected with 200 pg of gfp-Pk mRNA (b) showed no morphological phenotype compared to un-injected controls (a). Injection of >300 pg of gfp-Pk mRNA resulted in a shortened, curved body axis (c). Less than 200 pg of gfp-Pk mRNA was therefore injected in all subsequent analyses of PCP signalling requiring gfp-Pk as a marker of planar polarity. (d-f) Rescue of Pk1 morphant phenotype by gfp-Pk mRNA injection. Injection of 6 pg of Pk1 MO1 resulted in a shortened, curved body axis (d). Pk1 morphants were partially rescued by injection of 200 pg of gfp-Pk mRNA (e), and were fully rescued by injection of 400pg of gfp-Pk mRNA (f). 1. Carreira-Barbosa, F. et al. Prickle 1 regulates cell movements during gastrulation and neuronal migration in zebrafish. Development 130, 4037-46 (2003). 6 7 Supplementary Figure 7. Time-lapse analysis of neuroepithelial cell division in WT and MZtri chimeric embryos. Confocal micrographs taken from time-lapse analyses of cell division within the neural keel of WT and MZtri chimeric embryos. Time is indicated as minutes following the completion of cytokinesis. (a-c, d-f) mRFPlabelled1 MZtri neural progenitors within the neural keel of lynGFP-labelled2 WT host embryos. Apical MZtri daughter cells (arrows in a-f) fail to intercalate across the midline of the neural keel (a-c), or are severely delayed in their movement (d-f). These results indicate a cell autonomous requirement for Vangl2 function. (g-i) lynGFP-labelled2 WT neural progenitors within the neural keel of a mRFP-labelled1 MZtri host embryo. Apical WT daughter cells (arrow in g-i) also fail to re-integrate into the neuroepithelium following cell division, suggesting a non-autonomous role for Vangl2 in neurulation. Scale bars, 50 µm. 1. 2. Megason, S. G. & Fraser, S. E. Digitizing life at the level of the cell: high-performance laserscanning microscopy and image analysis for in toto imaging of development. Mech Dev 120, 1407-20 (2003). Koster, R. W. & Fraser, S. E. Tracing transgene expression in living zebrafish embryos. Dev Biol 233, 329-46 (2001). 7 8 Supplementary Figure 8. Blocking cell division rescues MZtri neurulation defects. WT (a,b,e,f) and MZtri (c,d,g,h) embryos were incubated in 4% DMSO (a,e,c,g), or in a solution of 150 um aphidicolin and 20 mM hydroxyurea with 4% DMSO (b,f,d,h) in order to inhibit cell division. Treatment was initiated at 80% epiboly, and embryos were cultured overnight until 22- to 24-somite stages. (a-b) Lateral and dorsal views of WT embryos demonstrating that embryogenesis proceeds relatively normally in the presence of cell division inhibitors. (c-d) Blocking cell division appears to rescue CE defects associated with the somitic mesoderm (arrowheads in c’ and d’) and neural plate (arrows in c’ and d’) of MZtri mutants. (e-h) Transverse sections through the trunk of WT and MZtri embryos stained for sonic hedgehog (shh) expression. shh floor plate expression (arrowheads) appears normal in WT embryos treated with (f) or without (e) cell division inhibitors. The expanded shh expression observed in the floorplate of MZtri embryos (arrowheads in g) is rescued upon blocking cell division (arrowhead in h). 8 9 UNILATERAL CONTRALATERAL number of distribution of intercalation of samples donor cells donor cells examined WT into WT 12% 88% 16 MZtri into MZtri 95% 5% 41 MZtri into WT 62% 38% 37 WT into MZtri 93% 7% 61 WT into WT 64% 36% 42 DONOR into HOST genotypes (+ mitotic inhibitor) Supplementary Table 1. Summary of WT and MZtri chimeric analyses. WT or MZtri donor cells were transplanted into a single location above the margin of mid-blastula staged WT or MZtri host embryos to ensure unilateral contribution of donor cell clones to regions of host embryos that are fated to become spinal cord. To assess the incidence of neural progenitor cell intercalation across the midline, chimeric embryos were analyzed at 20-somite stages for i) the unilateral distribution of donor cells within the neural tube, or ii) the presence of donor cells in the contralateral side of the neural tube. 9