Table S2. - BioMed Central
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Table S2: The ten most commonly expressed sequences (in order of abundance) with associated BLAST matches. Data are presented sequentially for each type of tissue as well as for the assembly based on the combined 454 data. Immune-related transcripts are denoted by an 'X'. Tissue type Testis Heart Spleen Intestine Contig ID contig00007 contig00018 contig01543 contig00671 contig02097 contig00263 contig01920 contig00082 contig00141 contig01877 contig00023 contig00024 contig00008 contig00003 contig00019 contig00002 contig00151 contig00014 contig00015 contig00176 contig00880 contig02824 contig00179 contig02696 contig03110 contig00383 contig02557 contig00064 contig00175 contig00033 contig00916 contig00604 contig00741 Length (bp) 2949 2506 470 845 101 1215 200 1720 1474 228 1496 1493 2062 2841 1543 3634 469 1656 1655 187 803 221 1553 259 138 1151 321 2107 1573 2585 120 422 259 No of reads 8124 5758 5140 4425 1783 284 284 278 233 213 5442 5424 5035 2484 1694 935 887 671 639 442 3491 3244 3102 2050 1362 1308 1298 1227 1167 1123 18761 9685 9111 Description testin hypothetical protein ATP synthase subunit beta hypothetical protein tubulin beta-2C chain tubulin beta-4B chain polyubiquitin eukaryotic translation elongation factor 1 alpha 1 variant tubulin alpha-3 chain polyubiquitin-C isoform 1 hypothetical protein hypothetical protein hypothetical protein NADH dehydrogenase subunit 1 Testin NADH dehydrogenase subunit 5 cytochrome c oxidase subunit I cytochrome c oxidase subunit III NADH dehydrogenase subunit 4 cytochrome c oxidase subunit I hypothetical protein LOC100559304 immunoglobulin gamma heavy chain B Ig mu chain C region hypothetical protein MTR_5g051110 hypothetical protein BOS_23207 Ig alpha-2 chain C region hypothetical protein BOS_23226 Heat shock 70 kDa protein 1B immunoglobulin J chain isoform 1 NADH dehydrogenase subunit 1 LRRG00134 unnamed protein product Tar1p Immunerelated? X X X X Species Common name Mus musculus Bos Taurus Medicago truncatula Melampsora larici populina Heterocephalus glaber Mus musculus gallus gallus Homo sapiens Gallus gallus Sus scrofa Medicago cavia porcellus Bos taurus Zalophus californius Mus musculus Arctocephalus pusillus Arctocephalus pusillus Arctocephalus pusillus Arctocephalus forsteri Arctocephalus pusillus Anolis carolinensis Canis lupus familiaris Canis lupus familiaris Medicago truncatula Bos taurus Homo sapiens Bos taurus Bos taurus Canis lupus familiaris Zalophus californianus Rattus norvegicus Mus musculus Medicago truncatula mouse bull clover poplar leaf rust naked mole rat mouse chicken human chicken wild boar clover guinea pig bull California sea lion mouse Cape fur seal Cape fur seal Cape fur seal Cape fur seal Cape fur seal Carolina anole dog dog clover cow human cow cow dog California sea lion rat mouse clover Evalue 8e-13 9e-96 3e-40 4e-42 0.0 0.0 2e-38 0.0 0.0 1e-34 9e-54 1e-72 4e-79 1e-107 1e-13 0.0 6e-75 e-113 e-120 3e-22 3e-28 1e-31 1e-106 2e-32 5e-18 1e-137 2e-56 0.0 6e-80 1e-105 2e-12 8e-37 1e-17 Kidney Lung Skin contig00491 contig0010 contig00120 contig00840 contig00410 contig00159 contig00834 contig04067 contig04947 contig04693 contig00951 contig04552 contig01876 contig04490 contig02747 contig04118 contig04665 contig01090 contig01291 contig01171 contig01436 contig01143 contig01165 contig00048 contig00082 contig01406 contig00475 contig19264 contig19888 contig12493 contig19948 contig19959 contig19158 contig20348 contig01306 contig19212 497 1017 950 178 549 842 183 357 104 156 998 192 729 212 567 334 162 464 232 405 113 430 413 2106 1741 133 821 197 155 479 152 151 205 129 1644 199 3285 2934 2029 1769 978 845 840 8669 8397 6664 5871 5764 4887 3715 3287 3208 3114 10566 7437 6972 6182 2925 1643 1016 589 527 515 8454 7056 7048 6054 4928 4909 3744 3667 3653 hypothetical protein LOC100559304 Ig alpha-2 chain C region NADH dehydrogenase subunit 1 immunoglobulin lambda-like polypeptide 5-like uncharacterized protein LOC310926 ATP synthase F0 subunit 6 unnamed protein product CHK1 checkpoint-like protein hypothetical protein BOS_23230 hypothetical protein BOS_1871 NADH dehydrogenase subunit 1 hypothetical protein hypothetical protein hypothetical protein LOC100559304 cytochrome c oxidase subunit I rRNA external transcribed spacer ATP synthase F0 subunit 6 hypothetical protein MTR_5g051110 hypothetical protein BOS_23207 hypothetical protein BOS_23226 hypothetical protein LOC100559304 rRNA promoter binding protein hypothetical protein LOC100559304 Heat shock 70 kDa protein 1B eukaryotic translation elongation factor 1 hypothetical protein LOC100717127 unknown cytochrome c oxidase subunit III cytochrome c oxidase subunit III cytochrome c oxidase subunit II zymogen granule protein 16 homolog B cytochrome c oxidase subunit I hypothetical protein cytochrome c oxidase subunit I NADH dehydrogenase subunit 4 cytochrome c oxidase subunit I X X Anolis carolinensis Homo sapiens Zalophus californianus Canis lupus familiaris Rattus norvegicus Pusa caspica Mus musculus Helicoverpa armigera Bos taurus Bos taurus Arctocephalus pusillus Oryctolagus cuniculus Oryctolagus cuniculus Anolis carolinensis Petrogal exanthopus celeris Mus musculus Zalophus californianus Medicago truncatula Bos taurus Bos taurus Anolis carolinensis Rattus norvegicus Anolis carolinensis Bos taurus Pan troglodytes Cavia porcellus Zea mays Martes pennanti Arctocephalus townsendi Zalophus californianus Canis lupus familiaris Vicugna pacos Neisseria polysaccharea Hippotragus niger Arctocephalus forsteri Arctocephalus pusillus lizard human California sea lion dog rat Caspian seal mouse cotton bollworm cow cow Cape fur seal European rabbit European rabbit lizard wallaby mouse California sea lion clover cow cow lizard rat lizard cow chimpanzee guinea pig corn fisher Guadelupe fur seal California sea lion dog alpaca giant panda sable antelope Australian fur seal Cape fur seal 8e-29 1e-126 4e-54 1e-23 1e-73 2e-70 5e-25 1e-15 1e-12 4e-26 1e-54 5e-12 2e-16 2e-21 2e-56 6e-14 2e-14 2e-35 2e-22 6e-61 3e-11 8e-75 4e-29 0.0 0.0 1e-17 1e-13 2e-21 9e-18 4e-73 2e-14 8e-19 4e-23 5e-16 1e-127 1e-14