Supplementary Table S1 The genotype of Clone males and females from an artificially-infested Scutellata colony at 23 microsatellite markers. All individuals are genotyped at four markers (S1 a). A subset of putative Clone males and three Clone females are genotyped at an additional 19 markers (S1 b). These can be identified in table S1 a as the individuals in bold. The numbers 1 and 2 refer to the two alleles identified in Clones at these markers and carried in their drones. Markers Samples A079 Ap043 At024 Av015 128,128 100,116 110,114 104,104 1 128,128 100,116 110,114 104,110 2 128,128 100,116 114,114 104,110 3 128,128 100,116 110,114 104,104 4 128,128 100,116 110,114 104,110 5 128,128 100,116 110,114 104,110 6 128,128 100,116 110,114 104,110 7 128,128 100,116 110,114 104,110 8 128,128 100,116 110,114 104,110 9 128,128 116,116 110,114 104,110 10 128,128 100,116 110,114 104,110 11 128,128 100,116 114,114 104,110 12 128,128 100,116 110,114 104,110 13 128,128 100,116 110,110 104,110 14 128,128 100,116 110,114 104,110 15 128,128 100,116 110,114 104,110 16 128,128 100,116 110,114 104,110 1 128 100 110 104 2 128 116 110 110 3 128 100 110 104 4 128 100 110 104 5 128 116 114 110 Control Clone from Pretoria 1 Emerging Clone females Emerging haploid Clone males 6 128 100 114 104 Markers Samples Emerging haploid Clone males Emerging diploid Clone male A079 Ap043 At024 Av015 7 128 116 110 104 8 128 116 114 110 9 128 116 114 110 10 128 100 114 110 11 128 116 114 110 12 128 116 110 110 13 128 116 110 104 14 128 116 114 104 15 128 116 110 110 16 128 100 114 104 17 128 100 110 104 18 128 116 114 104 19 128 116 110 104 20 128 100 110 110 21 128 116 114 104 22 128 116 114 104 23 128 116 110 104 24 128 116 110 110 25 128 116 110 104 26 128 116 114 110 27 128 116 110 110 28 128 116 110 104 29 128 100 110 104 1 128 100,116 110,114 110 2 128 100 110,114 104,110 3 128 100,116 110 104 Adult haploid Clone drones 1 128 100 114 104 2 128 100 110 104 3 128 100 114 110 Markers Samples Adult haploid Clone drones Adult diploid Clone drones Adult Clone females A079 Ap043 At024 Av015 4 128 100 110 104 5 128 100 114 110 6 128 100 114 104 7 128 100 114 110 8 128 116 110 104 9 128 116 110 110 10 128 100 110 110 11 128 100 114 104 12 128 116 110 104 13 128 100 114 104 14 128 100 114 110 15 128 116 110 104 1 128 100,116 110,114 104 1 128,128 100,116 110,114 110,110 2 128,128 100,100 110,114 104,110 3 104,128 116,116 110,114 104,110 4 128,128 100,116 110,114 104,110 5 128,128 100,116 110,114 104,110 6 128,128 100,116 110,114 104,110 7 128,128 100,116 110,114 104,110 8 128,128 100,116 110,114 104,110 9 128,128 100,116 110,114 104,104 10 128,128 100,116 110,114 104,104 11 128,128 100,116 110,114 104,110 12 104,128 100,116 110,114 104,110 13 128,128 100,116 110,114 104,110 14 128,128 100,116 110,114 104,110 15 128,128 100,116 110,114 104,110 Markers Samples Adult Clone females A079 Ap043 At024 Av015 16 128,128 100,116 110,114 104,110 17 128,128 100,116 110,114 104,110 18 128,128 100,116 110,114 104,110 100,116 110,114 104,110 19 20 104,128 100,116 110,114 104,104 21 128,128 100,116 110,114 104,110 22 128,128 100,116 110,110 104,110 23 104,128 100,116 110,114 104,110 24 128,128 100,116 110,114 104,110 25 128,128 100,116 110,114 104,110 26 128,128 100,116 110,114 104,110 27 128,128 100,116 110,114 104,110 28 128,128 100,116 110,114 104,110 29 128,128 100,116 110,114 104,110