Table 1 Sequences coding proteins downstream and upstream of full copies of the transposable elements
Scaffold SuperfamilyGene
Approximate Sequence
Sequence
Access Genbank
Identification
distance
identity (%) similarity (%)
(pb)
I-2
55
scramblase
U: 3,248
79
85
XP_001941325.1
family protein
tRNA-splicing
endonuclease
subunit Sen2
U: 1,049
65
77
XP_003845125.1
5'-3'
exoribonuclea
se
D: 4,625
88
93
XP_003845052.1
21
I-19
betaglucosidase 1
D: 1,950
59
72
XP_003711559.1
17
Gypsy-25
92
96
XP_001941251.1
17
I-28
56
69
XP_001818243.2
16
Tc1-Mariner-5
phosphoribosy U: 1,579
lformylglycina
midine
synthase
glycosyl
U: 4,606
hydrolase,
family 92
protein
MFS
U: 3,832
multidrug
56
75
XP_003233701.1
16
I-29
15
Tc1-Mariner-10
15
I-30/31
14
14
I-39
R2-1
transporter
multidrug
resistance
protein fnx1
U: 1,808
94
97
XP_001942159.1
ubiquitinconjugating
enzyme E2
U: 1,571
66
67
XP_003841380.1
P450
monooxygena
se
U: 1,070
51
70
XP_003857436.1
aldehyde
dehydrogenas
e-like protein,
plasma
membrane
ATPase
D: 207
65
79
XP_003856215.1
U: 4,228
94
95
XP_001933819.1
FAD
dependent
oxidoreductas
e
urea
amidolyase,
D: 3,431
66
78
XP_003840292.1
U: 3,910
66
78
XP_002150044.1
13
I-40
12
Tc1-Mariner-11
12
Tc1-Mariner-12
L-ascorbate
oxidase
U: 1,045
51
66
XP_003713236.1
aldehyde
dehydrogenas
e
U: 4,175
51
64
XP_002149594.1
AMP
dependent
CoA ligase,
putative
D: 1,500
52
69
XP_002144856.1
HypA
D: 2,971
celluloseU: 4,866
binding protein
58
72
76
84
XP_002844733.1
XP_003834860.1
ser/Thr protein D: 833
phosphatase
family protein
85
94
XP_001940921.1
lactonohydrola D: 3,148
68
83
XP_001941027.1
12
Gypsy-32
11
I-47
11
I-48
10
I-50
se
cyclopentanon
e 1,2monooxygena
se
U: 3,883
57
72
XP_001942142.1
DUF895
domain
membrane
protein
D: 194
84
93
XP_003843322.1
glucosamine6-phosphate
deaminase
D: 3,914
93
96
XP_001938488.1
UNC93-like
protein
ankyrin
repeatcontaining
protein,
putative
hybrid
polyketide
synthetase/no
nribosomal
peptide
D: 1,324
51
69
XP_001826644.1
D: 2,486
63
77
XP_002376776.1
U: 153
77
86
XP_003849178.1
9
Tc1-Mariner-17
synthetase,
FAD binding
domain
containing
protein
D: 411
81
90
69
79
U: 2,918
85
90
XP_003834539.1
U: 2,477
72
78
XP_003834541.1
endoglucanas U: 1,968
e IV precursor
amidohydrolas D: 1,236
e2
ABC drug
U: 1,027
exporter AtrF
76
85
XP_001931371.1
51
65
XP_003840511.1
61
75
XP_001396441.1
79
85
XP_001941325.1
D: 3,773
8
Gypsy-40
histidinol
dehydrogenas
e
3-ketoacylCoA thiolase
succinyl-CoA
ligase subunit
beta
07
I-58
07
I-59
7
R2-2
7
I-61
scramblase
family protein
U: 2,661
XP_001942357.1
XP_001263973.1
7
I-63
tRNA-splicing
endonuclease
subunit Sen2
U: 462
65
77
XP_003845125.1
5'-3'
exoribonuclea
se 2
D: 3,649
91
94
XP_001941197.1
asparagine
synthetase
chitin
synthase
D: 1
88
93
XP_001941322.1
U: 2,597
50
65
XP_001933885.1
vi
polysaccharid
e biosynthesis
protein
vipA/tviB
U: 603
84
91
XP_001933886.1
6
Gypsy-45
6
I-64
5
Gypsy-48
5
Tc1-Mariner-21
5
R2-3
benomyl/meth D: 2,954
otrexate
resistance
protein
trichothecene U: 1,158
3-Oacetyltransfera
se
fumarylacetoa U: 3,082
cetate
hydrolase
family protein
86
92
XP_001931654.1
75
85
XP_001930722.1
75
86
XP_002372444.1
gentisate 1,2dioxygenase
D: 74
60
72
XP_001398569.2
salicylate
hydroxylase
Membrane
proteinTapt1/
CMV receptor
D: 2,349
53
66
XP_001817373.2
U: 1,651
53
67
EKG12821.1
ABC drug
exporter AbcA
Aha1domain
D: 1,218
68
82
XP_001276075.1
U: 4,000
78
83
XP_001932744.1
family protein
5
Gypsy-51
5
Gypsy-52
5
Gypsy-53
5
Gypsy-55
4
R2-4
4
Tc1-Mariner-22
MFS
transporter
U: 1,401
51
68
XP_753036.1
MFS
transporter
NADdependent
epimerase/de
hydratase
glycosyl
hydrolase
prenyltransfer
ase, UbiA
family protein
purine
permease
D: 4,643
58
72
XP_751264.2
U: 4,619
62
75
XP_003000612.1
D: 3,014
59
71
XP_003000615.1
D: 3,620
62
75
XP_001274298.1
D: 1,260
88%
96
XP_001938368.1
5D: 3,541
methylthioade
nosine/Sadenosylhomo
cysteine
deaminase n1
78
88
XP_001938369.1
methylmalonat U: 3,462
89
93
XP_001938331.1
esemialdehyde
dehydrogenas
e
4
Gypsy-56
4
Gypsy-59
3
I-70
calreticulin
precursor
multidrug
resistance
protein fnx1
U: 1,293
81
86
XP_001938332.1
U: 4,077
70
78
XP_001938334.1
pH-response
regulator
protein palC
U: 907
86
92
XP_001938336.1
amino acid
permease
FAD binding
domain
protein
SacI domain
containing
protein
D: 3,101
63
78
XP_002481020.1
D: 1,567
54
68
XP_001266570.1
U: 1,747
82
91
XP_001940981.1
3
Tad-73
3
Gypsy-62
class II
aldolase/addu
cin domain
containing
protein
amino-acid
permease
D: 233
71
78
XP_001940875.1
D: 4,939
57
76
XP_003666115.1
RNA-directed
RNA
polymerase 2
U: 3,531
53
67
XP_001940806.1
hingosine
hydroxylase
D: 4,445
82
92
XP_001940804.1
3
I-74
tyrosyl-tRNA
synthetase
D: 761
94
97
XP_001932336.1
2
Gypsy-69
major myoinositol
transporter
iolT (sugar
transporter)
U: 4,761
84
92
XP_001933447.1
2
I-81
2
Tc1-Mariner-26
1
Gypsy-73
1
Gypsy-74
1
I-86
1
I-86B
1
I-89
dipeptidyl
peptidase 4
FAD binding
domain
containing
protein
phospholipase
, patatin family
protein
vegetative
incompatibility
protein HETE-1
isoflavone
reductase
family protein
D: 4,403
60
77
XP_003711833.1
U: 4,346
75
86
XP_001939593.1
D: 2,985
68
82
XP_001727333.2
D: 4,185
62
73
XP_001938086.1
U: 1,338
84
94
XP_001934235.1
chromatin
structureremodeling
complex
protein rsc1
kinesin light
chain 3
D: 4,664
85
90
XP_001936787.1
D: 1
68
79
XP_001941711.1
glycoside
hydrolase
family 93
protein
U: 2,047
57
69
XP_003665690.1
1
I-92/93
U: Upstream
D: Downstream
esterase/lipas
e
D: 4,653
62
81
XP_001939581.1
esterase/lipas
e
U: 2,637
62
81
XP_001939581.1