Supplementary Table 1. Genomic islands of M. avium subsp. paratuberculosis K-10.
Location in genome
Gene content
summary
99000..117073
Hypotheticals
292974.. 314208
Hypotheticals;
osmoprotection
proteins
Hypotheticals, Fadproteins
865425.. 899160
1285436.. 1321324
Best BLASTn hit to
genomic islands in
other species
Mycobacterium avium
104
M. avium 104
Possible donor
organism*
M. avium 104
Pseudonocardia,
Geodermatophilus,
Frankia,
Beutenbergia
Pseudonocardia
Hypotheticals;
Mycobacterium
esterase; GDP-Dcanettii
mannose
dehydratase;
nucleotide-sugar
epimerase; drug
resistance
1781905.. 1803222
Hypotheticals;
Alicycliphilus
alpha1,3denitrificans
glucosyltransferase;
isocitrate lyase
1881405.. 1904640
Hypotheticals;
M. avium 104
hydrolases;
membrane proteins
2373873.. 2399346
Hypotheticals; ISM. avium 104
element; heatinducible
transcription
repressor;
phosphohydrolase
4147431.. 4173538
Hypotheticals
M. avium 104
4163490..4199728
Hypotheticals; ISM. avium 104
element; membrane
proteins
4254011.. 4277488
Hypotheticals;
Mycobacterium
deoxycytidine
marinum
triphosphate
deaminase
4446083.. 4467623
Hypotheticals;
Mycobacterium
pyrroline and
liflandii
glutamyl reductase;
phosphoserine
phosphatase;
dehydratase
*Donor organisms are given as predicted in Pre_GI database.
Pseudonocardia
Pseudonocardia
Pseudonocardia
Pseudonocardia
Pseudonocardia
Pseudonocardia
Pseudonocardia
Blastococcus
Pseudonocardia