Table S1. Putative ORFs predicted inside the Co region. In bold the transcripts belonging to possible candidate genes.
Sequence name
Genome Browser
ORF (bp) AUGUSTUS
integrase
MDP0000897594
MDP0000326311
MDP0000524262
MDP0000136858
MDP0000367163
MDP0000284965
MYB transcription factor
mRNA splicing factor
PABP-interacting motif
DNA mismatch repair protein
phosphate transporter
actin depolymerizing factor
3234
123
395
432
120
7218
MDP0000508371
phosphate transporter
1616
MDP0000186457
MDP0000855671
maintenance of chromosome 1
AP2 transcription factor
3957
752
MDP0000187369
AP2 transcription factor
655
MDP0000286915
AP2 transcription factor
5151
putative MYB transcription
factor
pre-mRNA-splicing factor SLU7
ORF (bp) GENSCAN
1348
integrase
ORF (bp)
660
690
1623
putative MYB transcription factor
pre-mRNA-splicing factor SLU7-A-like
936
1656
432
putative COBL7
927
putative COBL7
DNA mismatch repair protein
Msh2
phosphate transporter, putative
actin depolymerizing factor
UPF0420 protein C16orf58
homolog
phosphate transporter, putative
789
627
441
DNA mismatch repair protein Msh2
inorganic phosphate transporter, putative
actin depolymerizing factor
1215
627
399
1380
1617
UPF0420 protein C16orf58 homolog
phosphate transporter
putative reverse transcriptase
1434
864
1353
AP2/ERF transcription factor
AP2/ERF transcription factor
putative reverse transcriptase
gag-pol polyprotein
putative polyprotein
759
759
489
1926
2205
AP2/ERF transcription factor
AP2/ERF transcription factor
864
1527
Putative gag-pol polyprotein
1130
putative Zinc knuckle containing protein
ethylene-responsive transcription
factor
ethylene-responsive transcription
factor
ribonuclease E
2061
putative COBL7
735
putative reverse transcriptase
putative COBL7
2076
1581
eth-responsive transcription
factor
eth-responsive transcription
factor
ribonuclease E
RING-H2 finger protein ATL79
putative COBL7
hyoscyamine 6-dioxygenase-like
putative reverse transcriptase
putative COBL7
438
720
1650
501
546
1020
1275
537
453
498
1671
MDP0000187760
1496
autophagy-related protein 9-like
2562
autophagy-related protein 9-like
2460
MDP0000927091
protein autophagy 9
homology to kinesin light
chain
4840
1515
kinesin light chain, putative
864
MDP0000287209
ring finger protein
3363
kinesin light chain, putative
RING-H2 finger protein ATL1like
putative reverse transcriptase
auxin-induced protein 5NG4
723
2029
1050
ring finger protein, putative
putative reverse transcriptase
auxin-induced protein 5NG4
1905
1086
639
MDP0000934866
gal-1-phosphate
uridylyltransferase
2457
gal-1-phosphate uridyltransferase
formate-tetrahydrofolate ligase
995
780
formate-tetrahydrofolate ligase, putative
1443
basic helix-loop-helix protein
2211
basic helix-loop-helix-containing
protein
gal-1-phosphate uridyl transferase
2160
768
MDP0000139773
NAM transcription factor
1044
MDP0000934869
basic helix-loop-helix protein
535
Molecular Breeding
Paolo Baldia, Pieter Jacobus Woltersa, Matteo Komjanca, Roberto Violaa, Riccardo Velascoa and Silvio Salviab
Genetic and physical characterization of the locus controlling columnar habit in apple (Malus x domestica Borkh.)
a
IASMA Research and Innovation Center, Fondazione Edmund Mach, via E. Mach 1 - 38010 - San Michele all'Adige, Italy
b
Faculty of Agriculture, University of Bologna, viale Fanin 44 - 40127 - Bologna, Italy
Corresponding author:
Paolo Baldi,
IASMA Research and Innovation Center, Fondazione Edmund Mach
Genomics and Crop Biology Area
e-mail: paolo.baldi@fmach.it
Tel: +39-0461-615378
Fax: +39-0461-615189