National University of Ireland, Galway Science without Borders Module Information Booklet For Undergraduate Visiting Students Semester 2, 2014-15 http://www.nuigalway.ie/internationalstudents/yourcountry/brazil/ 1 Biodiversity and Bioprospection Code BPS203 Module Title Plants Diversity, Physiology and Adaptation Semester ECTS Examination Arrangements 2 5 Two hour examination This module introduces students to the diversity of extant land plants, while explaining processes shaping their evolution. Lifecycles, physiological adaptions and ecological significance of major plant groups are described. The student is taught to identify these, and is encouraged to examine strengths and limitations of different plant groups through lectures and practical investigations. The course is supported by the latest textbooks & includes a trip to the National Botanic Gardens. Since colonising Earth's land surface 450 million years ago, plants have evolved to fill myriad habitats, diversifying into hundreds of thousands of species while shaping the world around us into complex evolving ecosystems. In this module, the student is introduced to the processes which have shaped plant diversity over time and physiological adaptations that allow plants to thrive in different environments. The characteristics of the main living plant groups are explored via both lectures and practical investigations, with a particular emphasis on the diversity of plant life-cycles and reproductive strategies. The groups studied range from the bryophyte groups to the main flowering plant families and include an introduction to characters of significance for plant identification. The module also emphasises the ecological and co-evolutionary interactions between different plant groups, and with other organisms (such as pollinators) . The module is supported by a scientific study visit to the National Botanic Gardens in Dublin. The student is encouraged to develop critical reasoning skills with respect to the strengths and weaknesses of different plant groups, and to make use of the most recent supporting text-books. The student is also introduced to key references from primary research literature, as part of their ongoing scientific education, and to develop transferable skills in observation, data collection and collation of reports. Overall, the course places the diversity of plants in an evolutionary and encourages the student to relate this to the ecological settings in which they are found. Code ZO320 Module Title Concepts in Population and Community Ecology Semester ECTS 2 5 Examination Arrangements Two hour examination / Continuous Assessment This module will cover the basics of animal population ecology and community ecology. It will focus on population level characteristics in animals (including density, dispersal and how populations grow or decline) and interactions between organisms of the same or different species populations. Code Module Title Semester ECTS ZO315 Applied Ecology 2 5 Examination Arrangements Two hour examination / Continuous Assessment An examination of applied aspects of Animal Ecology, this course shows students how our knowledge of the ecology of animal populations and communities can be used in various fields, including conservation, pest management, habitat management and protection, parasitological studies and even forensic science. Anthropogenic influences on populations and animal behaviour is also explored 2 Biotechnology Code Module Title Semester ECTS Examination Arrangements BPS307 Plant Physiology and Systems Biology 2 5 Two hour examination This module examines plant growth, development and interactions with the biotic and abiotic environment in a holistic manner taking into account regulation at the levels of gene expression, enzyme activities, and the role of specific metabolites. The course is taught through lectures and practicals enabling students to appreciate how plants can adapt in various environments. Plants undergo many processes, such as the transition from vegetative growth to flowering, expansive cell growth, organ development, and fruit ripening, and have adapted to many different environmental challenges. This module will examine the underlying processes that control these interactions in an integrated way taking into account modifications at the different system levels of gene expression, protein synthesis and activity of enzymes. Students will be introduced into the key role of hormones and secondary metabolites in sensing changes in the environment and then transmitting information to various parts of the plants. The distribution and importance of specific secondary metabolites will be discussed with respect to their influence on plant survival against abiotic (temperature, light) and biotic (competitors, herbivores and pathogens) as well as their uses by humans where relevant. The role of the circadian clock in the regulation of these various processes will also be discussed The course is taught through lectures which are supported by practicals designed to help students understand plant processes in a holistic manner. Code Course Semester ECTS Examination Arrangements MI203 Laboratory Skills in Microbiology II 2 5 Continuous Assessment The identification of newly isolated microbes often relies on conducting a series of biochemical tests. Students will learn how to perform the key tests used for bacterial identification. They will also learn how to transfer genetic material from one strain of bacteria to another using conjugation. To establish the degree of sensitivity to an antibiotic, students will learn how to perform an MIC (Minimum Inhibitory Concentration) test. The module will be supplemented by 6 lectures that will provide the theoretical background necessary to understand the laboratory methodologies. Code Course Semester ECTS Examination Arrangements MI204 Microbes and the Environment 2 5 Two hour examination Microbes impact almost every aspect of life on the planet. They are found almost everywhere that we have been able to look and underpin all the ecosystems that make the planet habitable for us. This module will address some the main areas microbes that microbes impact our lives, either directly by affecting our health, or indirectly by influencing the environment we live in. Organised as a series 24 one hour lectures it sets out to excite students about the hugely significant role that microbes have in all our everyday lives. 3 Code Course Semester ECTS Examination Arrangements MI322 Environmental Microbiology 2 5 Two hour examination Only a small proportion of the quintillion microbes living on Earth have been cultured - maybe 0.1% of them. However, there is a staggering breath of diversity within the microbial world - from photosynthesis, to methane-makers to rock-eaters. Students will learn about the strategies microbes use to grow and make energy. They will also consider the application of these strategies in cycling Nitrogen and Carbon. Next, they will consider the harnessing of those activities for environmental biotechnologies, including wastewater treatment and bio mining gold. Finally, the need to link ecology (identity) of yet-to-be-cultivated microbes in the environment with their physiology (activity) will be discussed. In practical sessions, the microbes in environmental samples will be counted. Code MI324 Course Immunology Techniques and Semester ECTS Examination Arrangements 2 5 Two hour examination Recombinant To describe the principles and mechanisms of prokaryotic genetic engineering and its impact on modern molecular biotechnology. To provide an overview of the use of molecular prokaryotic biotechnology to engineer cell factories for the production of recombinant biomolecules. To provide detailed information on the fundamentals of the immune system and its response to microbial infection Code Course Semester ECTS Examination Arrangements MI325 Microbial Infectious Diseases 2 5 Two hour examination Introduction to how bacterial and viral pathogens cause disease. Important virulence mechanisms in representative pathogens. The clinical implications of microbial infections. Host responses to infection, immunization, vaccines, antibiotics and antibiotic resistance. Code MI441 Course Anaerobic Microbial Biotechnology & Systems Biology Semester ECTS 2 5 Examination Arrangements Two hour examination This module will focus on the exploitation, and optimization, of complex microbial communitiesin biotechnology. Important applications of anaerobic microbial communities, including in wastewater treatment, biorefining and conversions into energy, will be discussed. An EcoSystems [Micro]Biology approach to understanding the structure and function of complex communities underpinning biotechnological applications will be discussed in detail; this will include the application of genomics, transcriptomics and proteomics to understand dynamic interactions between microbial trophic groups in complex systems. Using this type of knowledge to optimise technology – as well as optimizing the microbial community itself – will be considered. 4 Code MI442 Course Bioprocessors and Recombinant Protein Production Semester ECTS 2 5 Examination Arrangements Two hour examination This module will examine how recombinant proteins are engineered in the context of productive microbial cell factories and how traditional and advanced bioprocess technologies are employed for the industrial-scale production of such products. This unit will introduce major expression systems – E. coli, yeast and mammalian cells, and cell-free – used in recombinant protein production. Factors affecting the choice of expression host and approaches to identifying bottlenecks in expression of biomedically and biotechnologically important products will be reviewed. The unit will also review recombinant biotherapeutics currently available on the market and consider how they are produced. Bioprocess technology will investigate the production of biomass, primary and secondary metabolite production on the industrial scale by means of technologies associated with submerged cultures and solid-state fermentations. Engineering and Other Technological Areas Module Code BME200 Module Title ECTS Introduction to Biomaterials 5 Taught/Examined in Semester 2 Exam Duration Continuous Assessment The course will discuss the complexity of biological systems and the imposing need to design and develop biomaterial-based therapies to address currently unmet clinical needs. The course will cover biomaterial fabrication methods and in vitro and in vivo assessment thereof Module Module Title Code BME 2100 Materials I ECTS 5 Taught/Examined in Semester 2 Exam Duration Continuous Assessment & Exam Structure and classification of metals, elasticity, plasticity, dislocations, strain-hardening, alloying, recrystallisation, phase diagrams, heat treatment, metal forming, casting, forging, powder metallurgy, ferrous and non-ferrous metals and alloys, tensile and hardness measurements. Classification and properties of polymers, polymer processing (extrusion, injection moulding, blow moulding, rotational moulding, thermoforming, compression moulding) and polymer rheology and failure. Module Code BME403 Module Title ECTS Medical Implant and Device Design 5 Taught/Examined Exam Duration in Semester 2 2 Hour Exam This course integrates and applies the principles of engineering to the analysis and design of medical implants and devices, incorporating biomechanics, materials science, anatomy and physiology. 5 Module Code BME501 Module Title ECTS Advanced Finite Element Methods 5 Taught/Examined Exam Duration in Semester 2 Continuous Assessment The module will educate students in the use of linear and non-linear finite element methods that are most relevant to problems and systems encountered in both fundamental and applied research in biomedical and mechanical engineering. Module Code BME502 Module Title ECTS Advanced Tissue Engineering 5 Taught/Examined in Semester 2 Exam Duration Continuous Assessment The module is aimed at integrating the principles and methods of engineering and life sciences to generate an understanding of structure-function relationships in normal and pathological mammalian tissues, and based on these, build-up knowledge developing a strategy for restoring a specific organ/tissue. Module Code CE221 Module Title ECTS Building systems 5 Taught/Examined in Semester 2 Exam Duration 2 hour exam The course is designed to introduce students to the basic principles of building with the aim of creating a sound fundamental knowledge that will be enlarged upon in subsequent years. The subject matter covers the structure of the building team; planning and development acts, byelaws and building regulations; ground works, drainage and foundations, superstructures and stability; floor, wall and roof types; construction methods and the appropriate use of materials including steel, concrete, masonry and timber. Principles of building physics include heat and sound insulation, ventilation and light provision. Sanitary and other building services, architectural principles and internal and external finishes are also covered. Module Code Module Title ECTS CE222 Civil Engineering Materials & Design 5 Taught/Examined in Exam Duration Semester 2 2hour exam Coursework Concrete Technology – Introduction; Cements; Aggregates; Properties of fresh and hardened concrete; Specification, testing and compliance; Durability; Site Practise; Mix Design Concrete Laboratories Working in groups, students must participate in 4 linked laboratory experiments relating to Concrete Technology. These involve: 1. The classification of fine, 10mm and 20mm single size aggregates by selecting and preparing test samples and conducting sieve analysis 2. Use of the results of the above to design a concrete mix of specified characteristic 28 day cube strength and consistence, batching and mixing the concrete, conducting three different consistence tests on the fresh concrete, casting and compacting a range of test specimens including cubes, cylinders and beams 3. Assessing 7-day density, cube strength, Schmidt hammer readings and USPV times 4. Assessing 28-day density, cube strength, modulus of elasticity, indirect tensile strength by both bending and cylinder splitting. 5. Timber Engineering and Design 6. Timber properties; Structural grading; Engineered wood products; 6 7. Basis of Structural Design; Introduction to Euro codes; Limit states; Design of flexural members to EC5; Design of axially loaded members to EC5 8. Timber Laboratory 9. Testing of timber elements in flexure to EN408; Engineered wood products lab. Module Module Title Code CE224 Engineering Hydraulics I ECTS 5 Taught/ Examined in Semester 2 Exam Duration 2 hour exam Lecture Content: • Buoyancy and stability • Theorems on conservation of mass, momentum and energy • Flow measurement • Forces exerted by moving fluids • Energy losses in pipe flow • Simple pipe flow systems (single, series, parallel, simple branching) • Introduction to open channel flow Laboratories: The following six experiments are carried out in a hands-on manner by students working in small groups: 1. Examination and calibration of thin plate weirs. 2. Open channel flow, validation of Chezy and Manning formulae, calibration of C and n. 3. Laminar and turbulent pipe flow, hydraulic gradient, relation between hydraulic gradient and velocity, use of laminar flow to determine fluid viscosity. 4. Friction and form / shock losses in a small bore pipeline. 5. Force exerted by a jet of fluid on a plane or curved surface (Momentum Principle or Bulk Flow Eqn.). 6. Venturi section, conversion of pressure head to velocity head and vice versa, use and calibration of a Venturi section as a flow meter. Module Code CE226 Module Title ECTS Principles of Building 10 Taught/Examined Exam Duration in Semester 2 Continuous Assessment & 2 hour exam The course is designed to introduce students to the basic principles of building with the aim of creating a sound fundamental knowledge that will be enlarged upon in subsequent years. The subject matter covers the structure of the building team; planning and development acts, byelaws and building regulations; ground works, drainage and foundations, superstructures and stability; floor, wall and roof types; construction methods and the appropriate use of materials including steel, concrete, masonry and timber. Principles of building physics include heat and sound insulation, ventilation and light provision. Sanitary and other building services, architectural principles and internal and external finishes are also covered. A requirement of this module is that students complete a community-based engineering project in groups of two or three. Each group researches one particular aspect of the building process that relates directly to a real need in the community. Several groups can work on a single communitybased project, with each group researching a different aspect of the building process for that project. This is written up in the form of a professional report to a client, or as information for inclusion in a technical encyclopaedia, or as an article for communicating with the engineering community at large. Each member of the group must make a short oral presentation of the finding from their project using PowerPoint. If appropriate, students in subsequent years can further develop and advance the work completed by their colleagues. 7 Module Code CE334 Module Title ECTS Construction Operations 5 Taught/Examined Semester 2 in Exam Duration 2 hour exam This module provides details of the stages and operations involved in a construction project from a number of different perspectives: local authority, civil engineering consultant, civil engineering contractor and architect. Module Code CE343 Module Title ECTS Sustainable Energy 5 Taught/Examined Semester 2 in Exam Duration 2 hour exam This module introducefs students to sustainable energy resources, e.g. solar, wind and hydro, looking primarily at how the available resource can be quantified and how it can be harnessed. Module Code CE461 Module Title ECTS Civil Engineering Project 10 Taught / Semester 2 Examined in Exam Duration Project This is the major project that is completed by students in the final year of their undergraduate programme. Projects are generally conducted in pairs although there may be some instances of individual projects. The project is defined at the start of the academic year on some Civil Engineering topic and students have the full academic year to complete. Students also complete a number of other communications based assignments. Module Code CE462 Module Title ECTS Coastal and Offshore Engineering 5 Taught/Examined Semester 2 in Exam Duration 2 hour exam Wavemaker theory: mathematical model to simulate the creation of waves in a wave flume: progressive and evanescent. Tidal dynamics oceanic and local. Properties of ocean and coastal waves: length, celerity, water particle orbits, dynamic pressure, shoaling, refraction, breaking, and diffraction. Ports and harbours. Evaluate the wave forces on a seawall due to breaking- or non-breaking waves. Design a breakwater. Estuarine processes. Sediment transport, coastal protection. Module Code CE468 Module Title Estimates Costing ECTS and 5 Taught/Examined Semester 2 in Exam Duration Continuous Assessment The module has two main components: (1) Bill of Quantity production and pricing, and (2) Cost benefit analysis on an engineering project. The first component includes measurement, estimating, Bill of Quantity production / presentation, preliminaries, detailed estimating, editing, tender letter, form of tender and cover letter. The second component involves comparing the costs versus benefits of an engineering project. 8 Module Code CE469 Module Title ECTS Hydrology and Water Resource Engineering 5 Taught/Examined in Exam Duration Semester 2 2 hour exam This module introduces students to theory and practice of engineering hydrology and how these are applied to water resource engineering. Physical and chemical properties of water • Flow routing through reservoirs and lakes • Unit Hydrograph • Water quality in the natural environment • Hydrological and energy cycles • Hydrological frequency analysis • Precipitation measurement • Stream flow measurement • Hydrometric data, flow duration curves, mean daily flows, water balance and water resources • Climate change • Evaporation and evaporation measurement • Groundwater - hydrogeology Module Module Title ECT Taught/Examined Exam Duration Code S in Semester CE472 Structural Analysis 5 2 2 hour exam This module follows on from the structures modules in 3rd year and the students receive additional lectures on moment distribution in addition to the stiffness method, the concepts associated with shear walls and a brief introduction to the finite element method. Students will also be required to carry out a number of laboratory assignments that are used to illustrate the theoretical concepts from the coursework. Module Module Title Code CE475 Sustainable Energy and Energy in Buildings ECT S 5 Taught/Examined Exam Duration in Semester 2 2 hour exam This module comprises two sections. Section A introduces students to sustainable energy resources, e.g. solar, wind and hydro, looking primarily at how the available resource can be quantified and how it can be harnessed. Section B introduces students to energy use in buildings required to support the effective provision and maintenance of thermal, visual and acoustic comfort. Section A - Sustainable Energy: This section of the subject is an introduction to sustainable energy. The course covers various sustainable energy resources, including wind, solar, hydropower and geothermal from the point of view of quantification of the available resource, the energy conversion technologies used to harness them and the environmental impacts resulting from their use. World and national energy usage patterns are also examined as is the sustainability of traditional fuel supplies, e.g. fossil and nuclear fuels. Section B- Energy in Buildings: This section is an introduction to energy systems in buildings. The course describes the inter-relationships between building physics, human occupant behaviour and energy systems required to support the effective provision and maintenance of thermal, visual and acoustic comfort. Optimum states of comfort are defined including the necessary physical measurement and control infrastructure. Systematic procedures for the analysis of thermal comfort metrics and design principles of sustainable and smart buildings including conventional and renewable energy systems are presented. The content delivered in Section B is structured to consist of lectures in parallel with a laboratory element that provides the incremental development of energy simulation models that addresses the content in the 9 lecture part of Section B utilising real world buildings including a number of buildings on the NUI Galway campus. Module Code CE476 Module Title ECTS The Built Environment 5 Taught/Examined Exam Duration in Semester 2 2 hour exam This module is designed to introduce Engineers and Project Managers to the basic principles of architecture, planning and the considerations and common challenges involved in the successful design of both. It enables students to take up a position within the construction (or related) industry armed with a meaningful understanding of how their individual role is critical to realising good design. It allows meaningful communication with architects and planners with the mutual benefits of same. Module Code CE3101 Module Title ECTS Geomechanics and Geology 5 Taught/Examined Exam Duration in Semester 2 2 hour exam This module provides an introduction to soil as an engineering material and it includes some of the basic mechanics of soil behaviour. The module also provides the student with an introduction to geology. Module Code CE6101 Module Title ECTS Coastal and Offshore Engineering I 5 Taught/Examined in Exam Duration Semester 2 2 hour exam Wavemaker theory: mathematical model to simulate the creation of waves in a wave flume: progressive and evanescent. Tidal dynamics oceanic and local Properties of ocean and coastal waves: length, celerity, water particle orbits, dynamic pressure, shoaling, refraction, breaking, and diffraction. Ports and harbours. Evaluate the wave forces on a seawall due to breaking- or non-breaking waves. Design a breakwater. Estuarine processes. Sediment transport, coastal protection. Module Code CE6103 Module Title ECTS Design of Sustainable Environmental Systems II 5 Taught/Examined Exam Duration in Semester 2 Continuous Assessment& 2 hour exam This module covers advanced material related to the design and operation of environmental systems and the implementation of strategies to mitigate environmental impacts of anthrogenic activties. Topics covered include advanced nutrient removal and recovery technologies in wastewater, disinfection, biosolids and energy, regulation, erosion, groundwater contamination, energy efficiency,the water-energy nexus, wastewater treatment for developing countries. Assessment will be exam and project based Module Code EE219 ECTS Module Title Analogue Systems Design I 5 Taught/Examined in Semester Examination Arrangements Continuous Assessment & 2 2 exam hour 10 Introduction to semiconductor physics, diodes, real characteristics; Diode-Reactive Circuits; Bipolar Junction Transistor, Biasing; Common Emitter Amplifier, Box Model, Emitter Follower (The Common Collector Amplifier), Improved BJT AC Models; Field Effect Transistor, JFET, MOSFET, AC behaviour and applications; Operational Amplifier, Operational Amplifier Circuits, Frequency Response, Active Filters, amplifier applications. Introduction to semiconductor physics, diodes, real characteristics; Diode-Reactive Circuits; Bipolar Junction Transistor, Biasing; Common Emitter Amplifier, Box Model, Emitter Follower (The Common Collector Amplifier), Improved BJT AC Models; Field Effect Transistor, JFET, MOSFET, AC behaviour and applications; Operational Amplifier, Operational Amplifier Circuits, Frequency Response, Active Filters, amplifier applications Laboratories: ASD1-1 ASD1-2 ASD1-3 ASD1-4 ASD1-5 BJT – linear biasing and common emitter amplifier JFET circuits and drain characteristics Enhancement mode MOSFET Op-Amp non-inverting amplifier configuration Op-Amp frequency response Assignments: Circuit simulations using SPICE, MultiSim or CircuitLab ECTS Module Code Module Title EE220 Digital Systems I 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam This module covers the fundamentals of digital design using discrete gates. Students design simple combinational logic circuits, and incrementally build towards the design of sequential systems. Students also incorporate the electrical behaviour of digital logic circuitry into their designs. Binary codes, error detection and correction. Combinational logic design, system design using mediumscale integration devices. Sequential system design, state machines. Electrical behaviour of logic circuits, timing, power dissipation. Computer number systems, data formats, data structure. Module Code Module Title Electrical Circuits EE230 Systems ECTS Taught/Examined in Semester Examination Arrangements & 5 2 2 hour exam Review of DC and AC circuit analysis. Transform networks and transient analysis. Transfer functions. Interpretation of pole-zero maps. Frequency response of linear systems. BODE plots and system identification. Block diagram analysis. Module Code Module Title Communication EE343 and Systems ECTS Signals 5 Taught/Examined in Semester Examination Arrangements Continuous Assessment & 2 exam 2 hour This modules provides a detailed examination of topics relating to communication signals and systems such as: Transport layer protocols, UDP, TCP, Local area networking, network topologies, medium access control, inter- and intra-LAN connectivity, satellite networking technology, DCME technology, Amplitude Modulation (AM), Frequency Modulation (FM), digital modulation. 11 Module Code Module Title Exercise prescription EE349 and programming ECTS 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam This module focuses on the benefits of exercise. It will explore the principles and rationale for safe and effective exercise for different populations. Methods of assessment, exercise prescription, and programmes of exercise will be discussed in accordance with the American Council on Exercise (ACE) guidelines. Course material will be available online in blackboard. Module Code Module Title Kinesiology of Human EE351 Movement ECTS 5 Taught/Examined in Semester Examination Arrangements 2 Continuous Assessment& 2 Hr Exam This course focuses on the science of human movement and the electronic instrumentation used to measure different aspects of human movement both health and pathological. Learners will investigate the different aspects of the human gait cycle, temporal parameters of gait, electromyography, use of accelerometer in human movement studies and FES. This course will feature a combination of theoretical and practical laboratory activities. Course material will be available online in blackboard. Module Code Module Title Sports & Exercise EE356 Psychology ECTS 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam This module will explore the psychological aspects underlining sports and exercise performance, health and rehabilitation. It will examine factors that affect individual behaviour, participation, and adherence to exercise as well as the mental aspects of sports performance. The module features a combination of theoretical and practical components. Module Code Module Title Advanced Power EE442 Electronics ECTS 5 Taught/Examined in Semester Examination Arrangements Continuous Assessment& 2 exam 2 hour Review of AC/DC and DC/DC converters, 3-phase inverters, motor drives, high frequency magnetic design, power semiconductors & applications, power electronics for computing loads, power electronics for renewable energy systems Module Code Module Title Communications and Signal Processing EE444 Applications ECTS 5 Taught/Examined in Semester Examination Arrangements 2 Continuous Assessment & 2 hour exam 12 This module covers a range of applications of Digital Signal Processing (DSP) and communications technology, including: multirate DSP, speech processing, adaptive filters, biomedical signal processing, Quality of Service (QoS) and other advanced IP networking topics, Voice and Multimedia over packet, Security infrastructure and algorithms, application of mobile phone based sensing. Module Code Module Title Engineering EE447 Electromagnetics ECTS 5 Taught/Examined in Semester Examination Arrangements 2 hour exam & Continuous 2 Assessment This is a mid-level course in Engineering ElectroMagnetics. It replaces the former module Electromagnetics & Instrumentation. The module should provide you with an understanding of how EM Fields generate Electromagnetic Waves; a range of wave phenomena will be covered including Transmission Line Theory, Travelling and Guided EM Waves, Reflection, Refraction and Polarization of EM Waves, Antennas, Microwave Systems and EM Interference (EMI) 13 Module Code Module Title EE450 Power Systems ECTS 5 Taught/Examined in Semester Examination Arrangements Continuous Assessment & 2 hour 2 exam Sources of energy, renewable energy systems. Three-phase transformers. Transmission lines. Power and load flow. Symmetrical components and unsymmetrical faults. System protection. Synchronous generators, transient analysis and stability. Module Code Module Title EE452 System on Chip Design II ECTS 5 Taught/Examined in Semester Examination Arrangements 2 Continuous Assessment &2 hour exam Single cycle computer architecture. Programming considerations. Computer arithmetic. Hardware coprocessor acceleration. Interrupt handling, Pipelining. Embedded processor systems and applications. Related Electronic Design Automation (EDA) tools. Digital systems and reconfigurable System on Chip (SoC) case studies. Design project. Module Code Module Title Bioinstrumentation Design EE502 ECTS 5 Taught/Examined in Semester Examination Arrangements 2 Continuous Assessment On successful completion of this module, students will be able to: List the signal source, signal transduction method and signal characteristics of a range of biomechanical and physiological signals (EMG, ECG, EEG, blood pressure, limb movement: inclination, strain, joint angle, acceleration). Design the signal conditioning and amplification requirements for a range of biomedical transducers. Apply electrical safety and measurement principles in the design of biomedical instrumentation. Design a power supply for a variety of biomedical instruments. Design the drive circuitry for a range of biomedical actuators, including surface and implanted FES systems, Pacemaker devices, Drug-delivery systems. Select the appropriate architecture for a range of biomedical instruments by incorporating ergonomic principles. Design a PC-based biomedical instrument for the measurement of physiological and biomechanical signals based on the LabVIEW platform. Design a test protocol (which incorporates research ethics principles) for a biomedical instrument 14 Module Code ECTS Module Title The Exchange Student Research Project ENG505.II 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam Based at NUI Galway, this one semester module aims to provide the students with a specific research project, and to equip them with the skills necessary for their research career. On successful completion of this subject, the student will have demonstrated his/her ability to: 1) Give an academic level presentation on their research project outlining the research project background, a reflection of skills and knowledge acquired, a reflection on their contribution to the project. 2) Complete a significant engineering project that involves one or more of the following aspects: literature searching and understanding, design and analysis, experimental testing, mathematical modelling, materials characterisation, product manufacture, process development. 3) Produce a comprehensive and substantial engineering project report, which describes project objectives, background, test methods, results, discussion and conclusion. 4) Give a presentation supported by the use of an overhead projector, at an early stage of the project. Produce a GANTT chart to support this early presentation. 5) Maintain a laboratory book throughout the project. 6) Present and defend the results of their project after completion of the project. Code Course EOS305 Introduction to Applied Field Hydrology Semester ECTS 2 5 Examination Arrangements Two hour examination Basic hydrological concepts: 15% Key theories and concepts that define the discipline Data collection and processing: 45% How to access, collect and assess various data sets (rainfall, stream flow etc) Applied field hydrology: 40% Application of methods at the field and catchment scale using real-world data Module Code Module Title IE319 Operations Strategy ECTS 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam Case studies form an integral part of this course and student participation in class discussions is important. The objective of this course is to provide students with a theoretical background in Operations Strategy including to: 1. Understand and appreciate the role of Operations and Production Management as a competitive weapon 2. Identify the long term benefits of manufacturing in the areas of quality, flexibility, market response and customer satisfaction; 3. Appreciate product/process decisions; 4. Incorporate the management of technology 5. Understand productivity and its measurement in modern manufacturing and service industries. 6. Identify components of operations strategy; 7. Use analytical techniques; 8. Undertake the writings of Hayes, Meredith, Porter, Schroeder, Skinner and Wheelwright and Case Studies 15 ECTS Module Code Module Title IE345 Logistics Transportation Taught/Examined in Semester Examination Arrangements and 5 2 2 hour exam The Business Logistics course will equip students with a solid foundation in logistics basics. It illustrates that logistics is a major component of the supply chain process covering all the bases of logistics including technology, customer service, packaging, transportation, warehousing, inventory, procurement, controls, systems analysis, international issues, social responsibility etc. The course includes real-world examples and cases are based on real business situations and include both national international challenges. Specific objectives include: To develop an understanding of the state of the art strategic management thinking as it applies to firms with global operations. To develop a capacity for analysing logistics problems on a functional, business, and company-wide basis. To develop an awareness of the organisational structures used in logistics and their strengths and weaknesses of those structures. To develop an understanding of the key criteria utilised in multi-national location site selection, global scale facilities configurations, and international sourcing networks development. To become acquainted with some of the realities of running different types of production/distribution firms. Minimization of Consequences Cost reduction due to injuries and damage. near misses, principles of such investigations Module Code ME221 Module Title ECTS Fundamentals of Operations Engineering 5 Investigation and analysis of hazardous incidents and Taught/Examined Semester 2 in Examination Arrangements 2 hour exam & Continuous Assessment Introduction to operations engineering, design of products & services, lean and JIT manufacturing systems, facility design & layout, human resources in engineering, forecasting, capacity planning and aggregate production planning, inventory management, enterprise resource planning, scheduling, project planning/control and quality planning and control. Module Code ME420 Module Title ECTS Project for Visiting Students 5 Taught/Examined Semester 2 in Examination Arrangements Project Each student is assigned an individual project at the start of the academic year based on work done during industrial placement or topics assigned by staff members. Assessment is based on a comprehensive final report and oral presentation of the project results to the class and staff. Module Code ME426 ECTS Module Title Turbo machines and Advanced Fluid Dynamics 5 Taught/Examined in Semester Examination Arrangements 2 Project & 2 hour exam Fluid dynamics of turbo machinery. Classification, system characteristics, dimensionless parameters and scaling laws, energy and angular momentum aspects, incompressible flow turbo machines (pumps, fans, turbines), compressible flow turbo machines (compressors, turbines). 16 Module Code Module Title ECTS Taught/Examined in Semester Examination Arrangements ME429 Polymer Engineering 5 2 2 hour exam& Continuous Assessment Designing with polymers, viscoelastic phenomena, mathematical models for viscoelaticity, fracture, fatigue and failure of polymers, polymer rheology, analysis of polymer processing, introduction to polymer composites This module analyses the mechanical and processing behaviour of polymers (plastics), from short-term properties (stiffness, strength, fracture strength) to long-term, time-dependent properties (creep, stressrelaxation), as well as helping the student to develop an understanding of the effect of adding fibre reinforcement to create polymer composites. Melt processing of polymers is also examined and their important flow parameters investigate Module Code ECTS Module Title Combustion Science and Engineering ME517 5 Taught/Examined in Semester Examination Arrangements 2 Continuous Assessment The module introduces students to the fundamentals and applications of combustion. Students are expected to have a background in either chemical or engineering thermodynamics. The module covers: reaction stoichiometry, combustion thermodynamics, reaction kinetics and dynamics, transport phenomena, liquid and solid combustion, pollutant formation, and computational methods. Analytical and numerical problem-solving techniques are developed through homework assignments, projects and computer labs. Module Code ME522 ECTS Module Title Operations Management 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam& Continuous Assessment Introduction to operations management, design of products & services, lean and JIT manufacturing systems, facility design & layout, human resources in engineering, forecasting, capacity planning and aggregate production planning, inventory management, enterprise resource planning, scheduling, project planning/control and quality planning and control. ECTS Module Code Module Title ME572 Human Reliability 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam& Continuous Assessment Nature of Human error. Studies of Human error. Human reliability in risk assessment. The Human Reliability Assessment (HRA) process; task analysis, human-error analysis, human-error quantification, impact assessment, assessing and reducing the human error risk. Quality Assurance (QA). Human error data validation. Latent errors and system disasters. Future directions in HRA. Safety-related accidents and incidents. Health and Biomedical Sciences 17 Code Module Title Semester ECTS Examination Arrangements AN223 Embryology and Development 2 5 Two hour examination Study of embryonic and fetal development. The module will cover: fertilization, blastocyst development and implantation, placenta, early embryonic events that accompany the formation of the three germ layer and the folding of the embryo (gastrulation, neurulation, somitogenesis) and provide the basis for the body plan, and finally with the specific development of: CNS, CVS, Respiratory system, GIT, Urogenital tract, neck, and face. Code Module Title Semester ECTS Examination Arrangements AN226 Systems Histology 2 5 Two hour examination This module describes the histological structure and function of various body systems. In particular the module will focus on the skin, respiratory system, cardiovascular system, female and male reproductive systems, endocrine system, lymphatic system, urinary system, gastrointestinal system and vascular system. Students will sit a 2 hour exam at the end of semester 1 based on cell biology. Continuous assessment will be carried out in the form of practical exams. And end of semester practical exam will also be carried out (departmental assessment). Code Module Title Semester ECTS AN327* Head and Neck Practical 2 5 Examination Arrangements Practical Exam; Departmental Assessment This module is part of a package of modules which provide a three dimensional understanding of the general organization of the of the central nervous system and human head and neck anatomical structures through different methodological approaches. These approaches range from traditional dissection of cadaveric specimens to surface anatomy, to interpretation of standard clinical images (CT, standard and contrast radiographs, MRI) through topographical knowledge of the human body. This module will comprise 72 practical hours and the learning objectives will be assessed through a final practical exam using cadaveric specimens and regular continuous assesments. *These modules are only open to medicine or dentistry students at year 2 or more Code Module Title Semester ECTS AN3104* Systems Anatomy Practical 2 5 Examination Arrangements Practical Exam & Continuous Assessment This module forms part of a package of modules which provide a three dimensional understanding of the general organization of the human cardiovascular, respiratory, digestive, urinary and reproductive systems through different methodological approaches which range from traditional lecture delivery to surface anatomy, to interpretation of standard clinical images (CT, standard and contrast radiographs, MRI) and to understanding of common pathologies through topographical knowledge of the human body. This module will comprise 72 practical hours and the learning objectives will be assessed through a final practical exam using cadaveric specimens and regular continuous assesments. *These modules are only open to medicine or dentistry students at year 2 or more 18 Code BI206 Module Title Gene Technologies medicine and Semester ECTS Examination Arrangements 2 5 Two hour examination molecular This course provides a grounding in current concepts in molecular biology and recombinant DNA technology and their applications in biomedicine. It also incorporates technical training in biochemical approaches to enzymology and in recombinant DNA work. Code Module Title Semester ECTS Examination Arrangements BI207 Metabolism and cell signalling 2 5 Two hour examination The course addresses the question of how cells obtain and manage energy. It outlines various pathways for the processing and use of energy in the cell and covers the integration of these pathways in metabolism. Problems in these fundamental processes contribute to human diseases, which are also covered in the course. Code Module Title Semester ECTS Examination Arrangements BI208 Protein Structure and Function 2 5 Two hour examination This course will provide a comprehensive understanding of the fundamental concepts of the biochemistry of proteins and their vital role as the molecular tools of living cells. Using examples, the relationship between structure or biochemical function will be discussed. Students will be introduced to the essential role of Enzymes as biocatalyst in living cells. The practical course will introduce students to the main concepts and methodologies for bio molecule measurement in biochemistry. On successful completion of this module the learner should be able to: 1. Describe fully the general molecular structure and function of proteins 2. Demonstrate the role of enzymes as nature's own bio catalysis at the molecular level from studies of kinetics and molecular structure 3. Develop an understanding of the main experimental approaches and concepts for bio molecule analysis 4. Manipulate biochemical reagents and perform biochemical assays 5. Perform core techniques for measuring properties and quantities of the four main classes of bio molecules, including proteins 6. Demonstrate an ability to present and interpret scientific results 7. Draw scientifically grounded conclusions from observations and explain these in writing 8. Explain the main units of biochemical measurements and perform the basic calculations used in biochemistry Code Module Title Semester ECTS Examination Arrangements BI309 Cell Biology 2 5 Two hour examination Module Description: The course will provide students with a knowledge of the structure and function of typical eukaryotic cells, the fundamental concepts of how cells communicate and how the cells of the human immune system function. Practical classes will give students an understanding of laboratory safety, good laboratory practices, solutions and buffers, eukaryotic cells, and antibodies as biochemical reagents. 19 Code Module Title Semester ECTS Examination Arrangements BI313 Cell Signalling 2 5 Two hour examination This course will provide students an understanding of the biochemical basis of cellular signal transduction pathways, including examples of neurotransmitters and the nervous system, loss of regulation and control of the cell cycle in cancer, and apoptosis. The practical course will introduce students to techniques used to study cell signalling. The practical course will introduce students to the technique of sub-cellular fractionation, the glucose tolerance test with respect to insulin deficiency (diabetes), and students will carry out a mini-project in biochemistry. Code Module Title Semester ECTS Examination Arrangements BI317 Human Molecular Genetics 2 5 Two hour examination This course will provide a framework for understanding human molecular genetics. Students will develop an understanding of the structure of human chromosomes, the human genome and human genetic variation. They will also learn about chromosomal and genetic alterations associated with disease states, and the techniques used to identify genetic disease associations. Finally, students will develop an appreciation for the future impact of human molecular genetics on human health. In the post-genomic age, the importance of molecular genetics in human health is coming to the fore. This course will provide students with a detailed understanding of this rapidly advancing area of science and medicine Code Module Title Semester ECTS Examination Arrangements BI318 Human Nutrition 2 5 Two hour examination The Human Nutrition module covers a) Basic principles of healthy eating, historical aspects of the Irish Diet, aspects of food safety, food technology, food labelling. b) The relationship between diet and disease - heart disease, diabetes, obesity, eating disorders. c) Specific nutritional needs of different population subgroups - infants, children, teenagers, older people, ethnic groups, and sports people. d) Clinical nutrition includes enteral and parenteral nutrition e) Food Policy On successful completion of this module the learner should be able to: 1. Demonstrate knowledge of the basic nutrients in food 2. Describe the relationship between diet and both prevention and treatment of disease 3. Explain the special nutritional needs of different population subgroups 4. Explain the importance of nutrition in a clinical setting 5. Describe nutrition policy both in Ireland and Internationally Code Module Title Semester ECTS Examination Arrangements BI319 Molecular Biology 2 5 Two hour examination Module Description: This course will provide students with an understanding of the eukaryotic cell cycle and DNA replication, the genomes of eukaryotic cells, regulation of eukaryotic gene expression, and viruses. Practical aspects of the course will give experience of key fundamental techniques used in molecular biology including plasmid DNA preparation, restriction endonuclease digestion, polymerase chain reaction and agarose gel electrophoresis. 20 Code Module Title Semester ECTS Examination Arrangements BI321 Protein Biochemistry 2 5 Two hour examination This course will provide students an understanding of the synthesis and turnover of proteins in the eukaryotic cell, the role of proteins as molecular tools with particular emphasis on enzymes, and the structure and function of key protein glycoconjugates including glycoproteins and proteoglycans. The practical course will include techniques for the purification of proteins, protein assays, protein gel electrophoresis and enzyme assays including enzyme inhibition Code Module Title Semester ECTS Examination Arrangements CH205 Analytical & Environmental Chemistry 2 5 Two hour examination This is an introductory course to environmental and analytical chemistry. Analytical chemistry is vital in Industry, Environmental Monitoring, and Healthcare. Students need to understand the fundamental principles behind the analytical techniques and get practical, hands-on experience of these methods. The course comprises of lectures/practicals on: Atmospheric & Water Chemistry, Analytical Chemistry, Electrochemistry, Applied Spectroscopy, Separation Science and Bio analytical techniques. Code Module Title Semester ECTS Examination Arrangements CH339 Validation in Enterprise 2 5 Two hour examination This module covers pertinent topic concerning valedictory requirements within the biopharma-, pharmaceutical and chemical industries. Code Course Semester ECTS Examination Arrangements MI203 Laboratory Skills in Microbiology II 2 5 Continuous Assessment The identification of newly isolated microbes often relies on conducting a series of biochemical tests. Students will learn how to perform the key tests used for bacterial identification. They will also learn how to transfer genetic material from one strain of bacteria to another using conjugation. To establish the degree of sensitivity to an antibiotic, students will learn how to perform an MIC (Minimum Inhibitory Concentration) test. The module will be supplemented by 6 lectures that will provide the theoretical background necessary to understand the laboratory methodologies. Code Course Semester ECTS Examination Arrangements MI204 Microbes and the Environment 2 5 Two hour examination Microbes impact almost every aspect of life on the planet. They are found almost everywhere that we have been able to look and underpin all the ecosystems that make the planet habitable for us. This module will address some the main areas microbes that microbes impact our lives, either directly by affecting our health, or indirectly by influencing the environment we live in. Organised as a series 24 one hour lectures it sets out to excite students about the hugely significant role that microbes have in all our everyday lives. 21 Code Course Semester ECTS Examination Arrangements MI322 Environmental Microbiology 2 5 Two hour examination Only a small proportion of the quintillion microbes living on Earth have been cultured - maybe 0.1% of them. However, there is a staggering breath of diversity within the microbial world - from photosynthesis, to methane-makers to rock-eaters. Students will learn about the strategies microbes use to grow and make energy. They will also consider the application of these strategies in cycling Nitrogen and Carbon. Next, they will consider the harnessing of those activities for environmental biotechnologies, including wastewater treatment and bio mining gold. Finally, the need to link ecology (identity) of yet-to-be-cultivated microbes in the environment with their physiology (activity) will be discussed. In practical sessions, the microbes in environmental samples will be counted. Code Course Semester ECTS Examination Arrangements MI325 Microbial Infectious Diseases 2 5 Two hour examination Introduction to how bacterial and viral pathogens cause disease. Important virulence mechanisms in representative pathogens. The clinical implications of microbial infections. Host responses to infection, immunization, vaccines, antibiotics and antibiotic resistance. Code Course MI437 Bacterial Pathogenesis Semester ECTS 2 5 Examination Arrangements Two hour examination This module will explore the genetic basis of microbial pathogenicity, in representative gram-positive and gram-negative pathogens. The module will address virulence mechanisms, host pathogen interactions, immune evasion and microbial colonisation (biofilm) mechanisms. Specific topics that will be covered include pathogenicity islands and plasmids, virulence factors, type III secretion systems, infection strategies, resistance mechanisms and regulation of virulence gene expression. Code Course MI439 The Meaning of Life Semester ECTS 2 5 Examination Arrangements Two hour examination The module will cover a range of topics in the theory of Bioinformatics, ranging from fundamental concepts on the Central Dogma of Biology, through sequencing technologies in genomics, transcriptomics, proteomics and metabolomics. It will provide students with an insight into the potential impact of bioinformatics data can have on our understanding of microbial phylogeny; microbial community functioning; and microbial processes, including pathogenesis. It will also provide training for students in the tools used to interpret DNA and amino acid sequence information, including database interrogations; phylogenetic analyses; and interpretation of protein structural motifs. Code Course MI440 Dynamics of Microbial Gene Regulation Semester ECTS 2 5 Examination Arrangements Two hour examination Bacteria inhabit almost every environment on the planet and they respond to the different environmental conditions they encounter. Bacteria can sometimes adapt to a single stressful condition and at other times they respond to multiple stresses. In this module, we take an overview of multigene regulation, at both the DNA and RNA level, in bacteria such as E. coli and Salmonella and explore examples of microbial responses drawn primarily from different kinds of environmental stresses. 22 All OY modules below are available to Occupational Therapy students only Code Module Title Semester ECTS Examination Arrangements OY307 Research Methods 2 5 100% continuous assessment The aim of the module is to introduce the student to research, to enable them to design their own health-related research project proposal and to critically appraise the value of published research for clinical practice. The module introduces students to a range of research methods – including quantitative and qualitative methods Code Module Title Semester ECTS Examination Arrangements OY309 Neurology 2 5 2 hour written examination This interdisciplinary module introduces students to the more common neurological conditions encountered in practice. Together with the modules on neuropsychology, standardised testing and evidence based practice students will be introduced to a co-ordinated concept of neurological disorders presented from the aspects of pathology, impairment, activity limitation and lack of participation and will be able to consider a variety of therapeutic approaches to address such issues. Code OY314 Module Title Fundamentals Of Occupational Therapy Iv (Occupational Science) Semester ECTS Examination Arrangements 2 5 Continuous assessment This module introduces students to the field of occupational science. It further develops their understanding of people as occupational beings with an innate need for occupation. Primarily this module will explore the impact of occupational imbalance, occupational deprivation and occupational alienation and will examine global factors relating to occupational injustice. They will also consider how occupation relates to health, quality of life, identity, human development, social structures and policies. Code Module Title Semester ECTS Examination Arrangements OY404 Management 2 10 Continuous assessment This module is run in conjugation with the fourth year Podiatry students. Students are introduced to the basic concepts of leadership and personal and professional management relevant to their practice as newly qualified therapists. They will learn about quality assurance and auditing, and also about how to manage change and plan strategically. Professional documentation will be a core component of this module. The module will also encompass career development, continued professional development and preparation for employment. There is a professional development component which includes assertiveness training and strategies for dealing with challenging people. Code Course PH340 Biomedical Physics Semester ECTS 2 5 Examination Arrangements Two hour examination This course is designed to demonstrate how imaging methods utilize physical principles to address problems in clinical diagnosis, patient management and biomedical research. This module also covers the physics of radiotherapy and future directions for imaging & therapy. 23 Code Module Title Semester ECTS Examination Arrangements PH431 Medical Image Processing 2 5 Two hour examination This module will provide students with an in-depth introduction to several aspects of modern Medical Image processing. It will cover modern 3D imaging modalities including Computed Tomography and Magnetic Resonance Imaging. The course will involve students carrying out sample image processing tasks on medical images using relevant software packages. Image formats, histogram operations, spatial filtering. Fourier filtering, deconvolution. Basic image segmentation and object detection. Image registration, affine and other transforms. Principal component analysis. Computed tomography, Magnetic resonance imaging. Code Module Title Semester ECTS Examination Arrangements SL126 Linguistics 1 2 5 Continuous assessment Open to: Speech and Language Therapy, Linguistics students Aims of the Module This module will equip students with an understanding of a number of fundamental topics within the field of linguistics. It provides an overview of linguistics as an independent discipline, including syntax, semantics, morphology, pragmatics, bilingualism, psycholinguistics, and sociolinguistics. This course also aims to introduce SLTs in training to the development of speech, language, fluency, and voice across the lifespan and outlines communication changes across the lifespan. Code Module Title Semester ECTS Examination Arrangements SL223 Linguistics 2 2 5 100% continuous assessment Open to: Speech and Language Therapy, Linguistics students Aims of the Module To build on knowledge and skills gained from Linguistics 1 and to focus specifically on the morphological, syntactic, semantic, and pragmatic analyses of clinical data. This module will also build on the knowledge and skills in phonology and phonetic transcription which are covered in the Linguistics 1. This module aims to facilitate SLTs in training to develop systematic linguistic analytical skills which they will use in clinical practice. Code Module Title Semester ECTS Examination Arrangements SI208 Cardiovascular Physiology 2 5 Two hour examination The course develops fundamental understanding of human cardiovascular function. The heart and blood vessels are described and their function discussed. The principles of the circulatory system are detailed, as well as some of the control mechanisms in health and disease. Code Module Title Semester ECTS Examination Arrangements SI212 Respiratory Physiology 2 5 Two hour examination The course develops fundamental understanding of human respiratory physiology. The lung organs are described and their function discussed respectively. The principles of the respiratory system are detailed, as well as some of the control mechanisms in health and disease. 24 Code Module Title Semester ECTS Examination Arrangements SI312 Endocrinology 2 6 Two hour examination Overview of endocrinology and reproduction. Growth and development. Male reproduction. Adaptations at birth. Bone physiology. Calcium and phosphate metabolism. Growth hormone and insulin-like growth factors. Hormonal control of intermediary metabolism. Islets of Langerhans. Fat and protein metabolism. Stress. Adrenal medulla. Adrenal cortex. Physiological responses to stress. Code Course SI328 Exercise Physiology Semester ECTS 2 5 Examination Arrangements Two hour examination The Exercise Physiology module provides knowledge on the key cardiovascular, respiratory, and muscular systems responses to acute and chronic exercise. Students will appreciate the key changes that occur in the various physiological systems at rest and during exercise. The module will also investigate the measurement techniques used to assess the physiological and metabolic responses to exercise. Code Course Semester ECTS Examination Arrangements SI331 Renal Physiology 2 5 Two hour examination The Renal Physiology module will provide students with a knowledge of the normal physiology of the mammalian renal system. Topics covered will include nephron organisation, clearance, filtration, reabsorption, secretion, salt, water and acid base balance and micturitation. Theoretical learning and understanding of will be aided by laboratory practicals investigating the physiology of osmoregulation and clearance. Information and Communication Technologies (ICTs) Code Module Title Semester ECTS Examination Arrangements CS211 Programming and Operating Systems 2 5 Two hour examination This course introduces operating systems, the most fundamental piece of software running on any computer. On successful completion of this module the learner should be able to: 1. 2. 3. 4. 5. 6. 7. 8. Name and describe the main tasks of an operating system; Explain the concept and purpose of a process in an operating system; Represent the life cycle of a process in a diagrammatical fashion; Describe and compare various scheduling strategies; Explain and implement a queue data structure; Apply a semaphore as a tool in concurrent programming; Explain the necessary conditions for deadlock; Describe and apply an algorithmic strategy for deadlock detection. 25 *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title CT101 Computing Systems ECTS 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam The course is an introductory presentation of computing systems architecture and components: software, hardware and data that is being manipulated. Data representation in computing systems (numbers, audio, graphics, video); Introduction to Computing Systems Organization (CPU, Memory, Buses, I/O Devices); Introduction to Operating Systems; Introduction to Data Communications; Introduction to Networking; Introduction to Electronic Circuits; Digital logic fundamentals (CLC and FSM design); Principles of operation for main computing systems elements: CPU, Memory Subsystem (Primary and Secondary), I/O Subsystem and Devices *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title Algorithms & Information CT102 Systems ECTS 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam An introduction to algorithms, data structures and information systems Fundamentals of Data, Evaluation and Control Fundamentals of Problem Solving Data Structures Algorithms for searching Algorithms for sorting “Big Oh” notation Algorithms for compression Finite state machines Information systems Database systems Social networks Logic and Sets Functions and relations Google's page rank algorithm *****Students must have been enrolled on Year Long Modules in Semester 1***** ECTS Module Code Module Title CT103 Programming 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam Program Design and Flowcharting; Data input / output and formatting; Mathematical library functions; Relational and Conditional Operators; Arrays and Strings; While and For loops; Functions; Use of the Debugger; Functions; Data Structures; Referencing by address and Pointers; File input and output; Dynamical Memory Allocation 26 *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code CT108 ECTS Module Title Next Generation Technologies I 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam This is an introductory course into energy, environmental, medical informatics, digital media and Arts in Action. Introduction to Next-Generation Technologies including Digital Media and Gaming, Multimedia Web Development, Medical Informatics Informatics, Energy & Environmental Informatics, Computational Informatics and Enterprise Systems. The primary goal is to engage the students in software development at an early stage by using a team-based, problem-based learning approach focused on these thematic areas. Students will work on medium-sized group-based problems in these diverse domains that are specifically aimed at strengthening their grasp of context, core concepts as well as programming and algorithm development. Students will participate on the College of Engineering and Informatics Arts in Action Programme, and thereby gain an appreciation for the role of performance arts and sound creation on the software development process Module Code Module Title CT213 ECTS Computer Systems & Organization 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam Computer Systems History and Architecture Development; Von Neumann machine; memory systems; storage media; virtual and cache memory; interrupts; concurrency and pipelining; processes; scheduling; critical regions and synchronisation; file systems and management; distributed operating systems and parallel processing; case studies; UNIX, MSDOS and Windows NT. *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title CT216 Software Engineering 1 ECTS 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam Introduction to Software Engineering. Structured Programming and Structured Design. Modularity: The Structure Chart and Module Specification Methods. Quality Module Design: Coupling, Cohesion and Factoring. Structured Analysis: Data Flow Diagrams, Event Partitioning, Functional Decomposition. Transaction and Transform Analysis. Real time design issues in software development. State Transition diagrams and Petri Nets. Introduction to Formal Methods and Formal Design Specifications using the Z notation. *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title CT229 Programming II ECTS 5 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam Techniques to analyse algorithms. Abstract Data Types. Modularity. Queues. Stacks. Lists. Arrays. Sorting Techniques: Bubble, Selection, Insertion, Quick, Merge and Shell. Searching: Linear and Binary. Trees: Binary trees, Tree Algorithms, depth first, breadth-first searching. Balanced Trees, AVL Trees. Hashing. Priority queues and heaps. Introduction to Graphs. 27 *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title CT231 Professional Skills I ECTS 5 Taught/Examined in Semester Examination Arrangements Year Long Continuous Assessment Effective communication and presentation skills for a work environment. Preparation: defining the purpose, identifying the context, identifying the content, structuring the process, planning for time. Presentation skills for a software developer: code walkthroughs, peer reviews. Students will also be assessed by continuous assessment, including a sizeable project presentation. Module Code Module Title CT248 Introduction to Modelling ECTS 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam Introduction to Matlab: Data input & output, Manipulating Matrices, Data Visualisation, Programming constructs, Matlab functions and scripts, Introduction to Matlab OO classes. Introduction to Simulink, Basic Model Design & Implementation, Modelling Dynamic Control Systems, Strong emphasis on Energy Systems Case Studies both in lectures and associated lab work. *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title Next Generation CT255 Technologies II ECTS 5 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam This module consists of 2 parts, Informations Systems in Healthcare and Games Design and Programming. Information Systems in Healthcare provides students with an introduction into IT systems that are used in primary, secondary and tertiary care. Games Design and Programming provides an introduction to the production of 3D models for games, as well as an introduction to the programming of simple games/animation applications. *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title Networks and CT303 Communications ECTS 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam ISO / OSI Reference Model. Basic Data Communications, Physical Layer. Data Link Layer, Example Protocols. LAN Technology Standards, Virtual LANs. Network Layer, Internet Protocol, ATM. Transport Layer, TCP and UDP. Use of Higher OSI Layers. Client / Server Architectures. Network Programming using Sockets API. 28 *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title CT326 Programming III ECTS 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam Fundamentals of OO Analysis and Design. Encapsulation, Inheritance, Polymorphism. Function Overloading. Constructor Functions, Overloading Constructors. Controlling Fonts. String Classes. HTML Applet Attributes. Graphics. Event Handling. Exception Handling. Multithreaded Programming and Synchronisation. Abstract Classes and Interfaces. Packages. Input / Output Streams and Object Serialisation, Customising Serialisation. Random File Access. Socket Classes. Applet Security. Large Scale Design, Open / Closed Principle, Dependency Inversion Principle. Design Patterns, Observer Pattern, Abstract Factory Pattern. Component Design and Testing. Software Reflection. Collections Framework, Interfaces, Implementation Classes and Algorithms. *****Students must have been enrolled on Year Long Modules in Semester 1***** Course Module Title ECTS Taught/Examined in Semester Duration of exam (hours) CT327 Humanities Applications 5 Year Long Continuous Assessment The objective of this module is to enable students to carry out a piece of independent research and produce a paper for an academic conference. The research topic is one of their own choice, within the area of IT and the Humanities. During the academic year students produce an abstract, and after receiving constructive feedback, write an outline of their paper. They again receive feedback before producing a full version of their paper. Students also review other papers and respond with a critical evaluation of the work they read. They are supported by a series of tailored seminar session. *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title CT332 Database Systems II ECTS 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam Database Design: ER Modelling, EER modelling, mapping to relational schema. Normalisation - 1st, 2nd, 3rd, BCNF. Design Issues Choice of keys, denormalisation, indexing strategies. Concurrency Control Lost Update, Temporary Update, Incorrect Summary Problems Locking Mechanisms, Binary Locks, Shared and Exclusive Locks, 2 Phase Locking Protocol, Timestamping approaches. Multiversion approaches. Recovery Mechanism Motivations, Transactions, System Log, Commit Points, Checkpoints, Immediate & Deferred Update Protocols. Shadow paging. Distributed Databases Introduction, Fragmentation policies, Distributed Database Architectures, Distributed Query Execution and Optimisation, Distributed Recovery, Distributed Concurrency Control Object-Oriented Databases Mapping EER models to Object Oriented Schemas. OQL. 29 Course Module Title ECTS Taught/Examined in Semester Duration of exam (hours) CT337+ Technical Writing 5 2 Continuous Assessment This course aims to teach both the technical writing and editing skills needed to create specifications, design documents, and user or programming guides. Specific topics include: - The writing process: Gathering, writing, reviewing, rewriting, editing, indexing, testing, production and printing, distribution, maintaining and managing releases and soliciting and using customer feedback. - Different types of writing: Marketing, business overviews, user guides, reference guides, programming guides, online help and web sites. - The diplomacy of technical writing: Handling sticky work situations, how to approach a busy engineer, working with a group / on your own / in a large company or small start-up, and role playing. - Online documentation and the production of Web sites: Discussion, description, examples and exercises in the techniques needed when producing Web sites. +These modules are options chosen by NUI Galway undergraduates. Some of these options may not be available in any particular year. *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title Software Engineering and Project CT338 Management ECTS 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam The Software Development Life Cycle. Waterfall, prototype and spiral models of software product development. Object-Oriented analysis and design. Detailed instruction in one particular objectoriented methodology. CASE tool. Introduction to software testing: Black and White Box approaches. Complexity and metrics analysis. Transaction Flow Testing. Logic-Based Testing. The V-model of software development. The practice of project management, Group based exercises in project management. *****Students must have been enrolled on Year Long Modules in Semester 1***** Module Code Module Title Next-Generation CT360 Technologies III ECTS 10 Taught/Examined in Semester Examination Arrangements Year Long 2 hour exam More advanced coverage of Next Generation Technology topics including: Digital Media and Games Development. Medical and Bioinformatics. Acquisition of Biosignals, Lossy and Lossless Data Compression Techniques, Analysis and Classification of Biosignals. Biostatistical Methods. Energy Informatics. Computational Informatics. Enterprise Systems. 30 Course Module Title ECTS Taught/Examined in Semester Duration of exam (hours) CT345 Introduction to Modelling 3 2 2 hour exam This module introduces students to key concepts required to build simple system models using the Matlab/Simulink environment. Starting from basics, it covers essentials of Matlab : Data input & output, Manipulating Matrices, Data Visualisation, Programming constructs, Matlab functions and scripts, Basic statistical analysis, Introduction to Matlab OO classes. It then uses this to introduce Simulink covering following: Basic Model Design & Implementation, Modelling Dynamic Control Systems. There is a strong emphasis on Energy /Environmental Systems Case Studies both in lectures and associated labwork. Course Module Title ECTS Taught/Examined in Semester Duration of exam (hours) CT411+ Multimedia Development 5 2 2 hour exam This course concerns the area of media technologies covering design, development and integration of media elements into interactive systems. +These modules are options chosen by NUI Galway undergraduates. Some of these options may not be available in any particular year. Course CT866+ Module Title Networks Computer Communication ECTS Taught/Examined in Semester Duration of exam (hours) 5 2 2 hour exam & assignment and Basic data communication. Transmission. Protocols. Networking. Distributed Systems. +These modules are options chosen by NUI Galway undergraduates. Some of these options may not be available in any particular year. Module Code Module Title CT420 Real Time Systems ECTS 5 Taught/Examined Semester 2 in Examination Arrangements 2 hour exam Real-time operating systems: Multi-tasking; co-ordination – semaphores, mutexes and signals; process message passing and task communication; concurrency; real-time scheduling; real-time system design; Petri nets; Standards POSIX; Operating systems QNX; developing real-time systems; debugging and testing real-time systems; verification of real-time system performance. Module Code Module Title Advanced Professional CT436 Skills ECTS 5 Taught/Examined in Semester Examination Arrangements 2 Continuous Assessment Developing good interpersonal and group skills, whilst examining the role of professional software engineers in society. A primary objective is to integrate and expand upon IT and Business skills. Support is provided in the areas of creativity and innovation, funding and planning. The module also examines ethical issues and the social impact of computing, with an emphasis on the responsibilities of the professional software engineer in maintaining good practice in systems development. 31 Module Code Module Title Computer Security and CT437 Forensic Computing ECTS 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam Computer security. Risk assessment. Policies, procedures. Audit. Incident handling. Intrusion detection. Honeynets. Firewalls. Filters. Phishing. Cryptography. Steganography. Information visualisation. Computer forensics and computer crime. Evidence: acquiring, analysing, reporting. Forensic toolkits. Module Code Module Title Machine Learning and Data CT475 Mining ECTS 5 Taught/Examined in Semester Examination Arrangements 2 2 hour exam Machine Learning is concerned with developing algorithms that improve their performance over time, as they are exposed to new data. Data mining is concerned with the related task of extracting interesting information from large, unstructured data sources. This module introduces learners to the different categories of machine learning task and important algorithms for tackling them. The learners get practice in selecting and applying these algorithms in practical data mining problems, evaluating. Definitions of Machine Learning, Data Mining and the relationship between them; the CRISP Data Mining process model; major tasks including classification, regression, clustering, association learning, feature selection, and reinforcement learning; algorithms for these tasks including decision tree learning, instance-based learning, probabilistic learning, support vector machines, neural networks, association rule mining, and Q-learning; open-source software tools for data mining; practical applications such as object recognition, healthcare data analysis, and text mining to identify spam email; ethical issues and emerging trends in data mining and machine learning Module Code CT866 ECTS Module Title Computer Communications 5 Taught/Examined in Semester Examination Arrangements 2 Continuous Assessment Data Communications, Transmission Media, POTS, Asynchronous / Synchronous Transmission. Circuit/Packet Networks. ISO OSI Reference Model / TCP/IP Model/ ATM Model. LAN/WAN Technologies. High Speed Networks, Network Timing. Internet Protocols & Technologies. Developing Wireless Technologies Module Code CT2102 ECTS Module Title Object Oriented Programming II 5 Taught/Examined in Semester Examination Arrangements 2 Continuous Assessment This module builds upon Object Oriented Programming I and covers topics such as Interfaces, Collections, Sorting & Searching, Recursion, GUI and Event-Driven programming 32 Module Code CT2104 ECTS Module Title Web Application Development Taught/Examined in Semester Examination Arrangements Continuous Assessment & 2 2 Hour Exam 5 This module teaches the students how to create modern client-server browser-based web applications. The module builds on introductory web technology and programming introduced in Years 1 and 2, as well as integrating with the database design and development concepts learned in Year 2. The core technologies learned will be client programming and server side programming. A group development project will form a major part of the workload. Module Code CT2105 ECTS Taught/Examined in Semester Examination Arrangements Module Title Web Based Information Systems 5 2 2 Hour Exam This module introduces the concepts and techniques associated with web-based Information systems. In particular, search engines, recommender systems, social networks and document filtering are studied. Code Course Semester ECTS Examination Arrangements PH336 Signal Analysis 2 5 Two hour examination This module introduces students to the concept of signals as information sources that are encountered throughout nature, mathematics, experimental science, and culture. We explore the various subclassifications of signals (continuous/discrete; linear/non-linear; time invariant/variant; etc.), and their dimensionality (e.g., 1-d time-series, 2-d images). Methods are presented for the analysis of signals in Continuous Time, and Discrete Time; by decomposition into their frequency components in Fourier Series, and Fourier Transforms; by employing Laplace Transforms, and State Equations. Code Module Semester ECTS Examination Arrangements TI223 Introduction to GIS 2 5 Continuous Assessment Aims and Objectives Basic concepts of GIS Applications of GIS Computer skills This course covers the basic concepts and applications of a geographic information system (GIS). The topics of GIS data concept, modelling, attribute management, input and analysis are explained. GIS software ArcView is selected as the main training software package for computer practical in this course. Students will get general knowledge of a GIS and acquire the basic techniques of GIS software to independently produce professional maps and carry out queries and basic analyses. General Course Outline o Introduction: overview, definition o Spatial data concept o Spatial data modelling o Attribute data management o Data input o Data analysis 33 Marine Sciences Code Module Title Semester ECTS Examination Arrangements BPS306 Applied Aquatic Plant Science 2 5 Two hour examination Introduction to Algal Biotechnology including sustainable utilisation of natural resources and algal cultivation. Biological features of key species; Applications of algae and algal compounds; Species specific distribution of algal compounds, their metabolism, structure and important properties; Irish and international case studies. Code Course Semester ECTS Examination Arrangements EOS303 Ocean Dynamics 2 5 Two hour examination Introduction to dynamical oceanography, Newtons Laws of motion, scales and dimensions Basic forces that drive and control ocean currents, turbulence, viscosity and diffusion Scaling the equation of motions;- case studies theoretical and practical Frictionless flows, geostrophic currents, estimating currents from density measurements Wind driven circulation, Vorticity, Ekman pumping, Large scale geochemical cycling, nutrient fluxes and transport Shelf sea physics - heating/cooling effects, tides and coastal processes Plankton dynamics Code Course Semester ECTS Examination Arrangements EOS304 Aquatic Geochemistry 2 5 Two hour examination This course introduces students to the quantitative treatment of chemical processes in aquatic systems. It includes a brief review of chemical thermodynamics and photochemistry as it applies to natural waters. Specific topics covered include acid-base chemistry, precipitation-dissolution, coordination, and redox reactions. Emphasis is on equilibrium calculations as a tool for understanding the variables that govern the chemical composition of aquatic systems and the fate of pollutants. Code Course MI438 Marine Microbiology and Nutrient Cycling Semester ECTS 2 5 Examination Arrangements Two hour examination This module will introduce students to the fundamentals of molecular microbial ecology and the advances such approaches have bought about in the field. Students will be introduced to, and will critically assess, the techniques employed in molecular microbial ecology. Students will then focus on microbial mediation of nitrogen (N) and carbon (C) cycling in the marine environment. Finally, future perspectives in molecular microbial ecology linking community structure and function will be addressed. 34 Mathematics Code MA203 Module Title Linear Algebra Semester 2 ECTS 5 Examination Arrangements Two hour examination An introduction to the theory and application of linear algebra. Topics covered include: 1. 2. 3. 4. 5. 6. 7. Algebra and geometry of Rn . Vector addition, scalar multiplication. Lines and planes in 2 and 3 dimensions. Parametric equations of lines and planes. Matrix algebra. Addition, scalar multiplication, matrix product, transpose. Matrix inverses. Systems of Linear Equations and Gaussian Elimination. Elementary operations, echelon form, over and underdetermined systems, homogeneous systems. Computing matrix inverses. Dot product on Rn . Perpendicular and parallel components, distance, angle, orthogonal matrices. Determinants. Minors and cofactors, area and volume. Properties of determinants. Matrix inverses. Eigen values and Eigenvectors. Characteristic equation, eigenvalues, eigenvectors, diagonalisation. Orthogonal diagonalisation of symmetric matrices. Applications. Code MA212 Module Title Calculus II Semester 2 ECTS 5 Examination Arrangements Two hour examination An introduction to the calculus of functions of two variables, and vector valued functions. The topics include: Vectors; Multivariate Calculus; Optimization of elementary multivariate functions; Integration of elementary multivariate functions over polygons. This course introduces the calculus of functions of two variables, and vector valued functions. The topics include: 1. 2. 3. 4. Vectors, scalar product, cross product in R3, equations of lines and planes in parametric form. Functions of several variables, vector-valued functions (in R2 and R3), partial derivatives, gradients, tangent planes, the chain rule. Maxima and minima of functions of 2 variables, Lagrange multipliers. Integration of functions of 2 variables and the computation of volumes. Code MA216 Module Title Mathematical Molecular Biology II Semester 2 ECTS 5 Examination Arrangements Two hour examination This module is intended to give students an understanding and knowledge of the application of mathematical or algorithmic methods to defined problems in molecular biology. The focus is primarily on problems involving mutation discovery and evolutionary inference to predict mutation frequencies in a population as they change over time, and how to detect mutations of interest. This course introduces aspects of population and evolutionary genetics and includes: (1) Detecting mutation, mixing and linkage in DNA sequences. (2) Genotype inference across genes in a population. (3) How genome assembly algorithms affect mutation screening. (4) Inferring population history and coalescence from genetic linkage patterns. (5) Estimating population structure and admixture from DNA changes. (6) The neutral theory of molecular evolution. (7) Testing for adaptive evolution in a population. (8) Linking genotype and phenotype data using hierarchical clustering and prediction models. 35 Code MA218 Module Title Advanced Statistical Methods for Business Semester 2 ECTS 5 Examination Arrangements Two hour examination This module demonstrates further applications in inferential statistics with applications in Economics, Business, Marketing and Finance. Students are required to have completed an introductory course in Descriptive Statistics and Probability equivalent to MA109 Statistics for Business and an introductory course in Inferential Statistics, equivalent to MA217 Statistical Methods for Business. Lectures will be used to present the ideas of statistical theory and practice, these will include demonstrations of real-life statistical analyses based on business oriented problems. Students will be required to apply the methodology to example datasets using suitable statistical software, SPSS. The tutorials and practical sessions will give support for this aspect of the course. On successful completion of this module the learner should be able to: 1. Describe the conditions when a parametric test or a non-parametric test alternative is more suitable in certain problems and complete non-parametric testing procedures: the Sign Test, the Wilcoxon Rank Sum Test, the Wilcoxon Signed Rank Test. 2. Complete advanced analysis of simple linear regression models, including analysis if variance (ANOVA) in the response variable, calculation of R-squared and completion of the ANOVA table, further exploration into inference for regression model parameters, including individual t-tests for model parameters and the F-test through calculation of ANOVA table, check assumptions, diagnostic and model checking, apply transformations, using the model for prediction, prediction intervals and confidence intervals. 3. Carry out analysis for problems requiring a multiple regression model, i.e. many candidate predictors may be used to explain the variability in the response variable. This includes, interpretation of regression coefficients, constructing confidence intervals and carrying out hypothesis tests for regression parameters through individual t-tests and the ANOVA F-test, using the model for prediction, prediction intervals and confidence intervals, model -building, variable selection procedures, adjusted R-squared. 4. Extend knowledge of multiple regression to interpretation of model coefficients for models with qualitative/categorical predictors and analysis of covariance, ANCOVA. 5. Complete basic time series analysis, including descriptive analysis via calculation of various index numbers, recognise time series components, apply smoothing models such as Moving-average models, Exponential Smoothing, and Holt-Winters Smoothing, apply seasonal regression models using additive models with indicator variables, describe autocorrelation and carry out the Durbin-Watson test, use models to forecasting trends and seasonality, measure Forecasting accuracy using MAD, MAPE, and RMSE. 6. Apply methods in Quality Control including compilation and interpretation of statistical control charts for monitoring the mean of a process, monitoring the variation of a process, and for monitoring the proportion of defectives generated by a process, diagnosing the cause of variation and capability analysis. 7. To communicate results of analyses in clear, structured reports. 36 Code MA283 Module Title Linear Algebra Semester 2 ECTS 5 Examination Arrangements Two hour examination This course covers the theory and practice of Linear Algebra. Topics covered include: 1. Linear Systems and Matrices: Gaussian Elimination. Elementary row operations. Invertible and singular matrices. Finding the inverse of a matrix by Gauss-Jordan Elimination. Elementary matrices. Determinants. Applications to traffic flow, networks and graphs. 2. Vector Spaces and Linear Transformations: Vector spaces and subspaces. Linear combinations, spanning sets, linear independence. Bases. Finding bases for subspaces of Rn. The kernel and image of a linear transformation and their dimensions. Finding the kernel (nullspace), image (column space) and the rank of a matrix. Fundamental Theorem of Linear Algebra. Applications to coding. 3. Eigen values and Eigenvectors: Matrix representations. Eigen values and eigenvectors of a linear transformation. The characteristic polynomial. Diagonalization of square matrices and applications to coupled systems of linear differential equations and to page rank algorithms. 4. Inner products: Inner product spaces. Orthogonality. The Cauchy-Schwarz Inequality. Orthogonal projections. Orthogonal diagonalization of symmetric matrices. The Spectral Theorem. Applications to least squares solution of over determined systems and regression. Code MA287 Module Title Analysis II Semester 2 ECTS 5 Examination Arrangements Two hour examination This module introduces the theory of functions of a complex variable, starting with an introduction to complex numbers and ending with applications of the Residue Theorem and conformal transformations. Topics covered include: 1. Complex numbers. Complex numbers and their representation. Modulus and argument. Polar form. Roots. 2. Derivates. Complex functions. Cauchy-Riemann equations. Harmonic functions and harmonic conjugates. Elementary functions. 3. Integrals. Line integrals: the Fundamental Theorem of Calculus. Cauchy's Theorem and its consequences. Cauchy's Integral Formula. Applications: Liouville's Theorem and the Fundamental Theorem of Algebra. 4. Series. Applications to real analysis. Taylor series. Laurent series. The Residues Theorem. Applications to improper integral. 37 Code CS319 Module Title Scientific Computing Semester 2 ECTS 5 Examination Arrangements Two hour examination This module introduces the key concepts of object oriented programming in the context of scientific computing. By studying classic computational problems from mathematics and applied science, the need for reliable, reusable and robust object oriented code is motivated. By studying the implementation of solutions to these problems, students gain experience in programming in a high-level, object oriented language. Emphasis is paid to the development of reliable and efficient code. Code MA302 Module Title Complex Variables Semester 2 ECTS 5 Examination Arrangements Two hour examination This course introduces complex variable theory. Topics covered include: Cauchy-Riemann equations, Laplace's equation, complex numbers to the power of complex numbers, Integral evaluation in the complex plane, Cauchy's integral theorem, Cauchy's integral formula and Cauchy's integral formulae for derivatives, residues and the residue theorem. This course introduces the theory of complex variables. The material covered includes: 1. Complex functions: simplification of complex functions, terminology used in connection with complex numbers, differentiation of complex functions, Cauchy-Riemann equations, evaluation of derivatives, Laplace's equation, harmonic functions, harmonic conjugate. 2. Powers of complex numbers: polar form, roots of complex numbers, complex powers of complex numbers, plotting in the Argand diagram, inverse trigonometrical functions and their evaluation. 3. Integral evaluation: parameterisation, analytical and non-analytical integrands, Cauchy's integral theorem. 4. Integral evaluation: Cauchy's integral formula and Cauchy's integral formula for derivatives. 5. Residues: classification of singularities, computation of residues, residue theorem, computation of integrals using the residue theorem. Code Module Title Semester ECTS Examination Arrangements MA334 Geometry 2 5 Two hour examination This module is an introduction to the ideas and methods of classical and modern geometry. On successful completion of this module the learner should be able to: 1. Perform basic calculations of distance, angle measure and area in the Euclidean plane. 2. Describe, with reference to appropriate examples, the difference between the synthetic and algebraic approaches to Euclidean geometry. 3. State and prove some of the basic propositions of plane Euclidean geometry. 4. Use diagrams to aid in constructing proofs and solving problems. 5. Apply deductive reasoning to solve geometric problems. 6. Explain the classification of isometries of the Euclidean plane. 7. Describe the symmetries of some simple shapes such as regular polygons. 8. Calculate spherical distance, angle measure and area. 9. Compare and contrast the geometry of the plane with that of the sphere. Students will study plane Euclidean geometry in a rigorous fashion and will also see some examples of non Euclidean geometries. The course is particularly well suited to students considering a career as a mathematics teacher but should be of interest to any student of mathematics. 38 Code Module Title Semester ECTS Examination Arrangements MA335 Algebraic Structures 2 5 Two hour examination An introduction to the theory and application of modern abstract algebra. Syllabus Outline: 1. Groups, Rings and Fields, Permutation groups, Symmetry groups, Units of the integers modulo n , group axioms, Quaternions, Polynomial rings, Gaussian integers, Finite fields, ring and field axioms, Applications. 2. Lattices and Lattice Points in Euclidean Space Fundamental regions and their volumes, Minkowski's Theorem, primes that are sums of two squares, non-negative integers as sums of four squares. 3. Fermat’s Last Theorem Pythagorean triples and their classification, Fermat (The Story) and his Last Theorem (n=4), outline of modern developments via Geometry. Code MA342 Module Title Topology Semester 2 ECTS 5 Examination Arrangements Two hour examination An introduction to the theory and application of topology. Syllabus Outline 1. 2. 3. 4. 5. 6. The basic algebra of set theory, unions, intersections, complements, De Morgan's Laws. Topological spaces - definitions and basic examples. Continuity and Homeomorphism. New spaces from old. Subspaces, quotient spaces, products. Compactness and connectedness. Applications: Using topological ideas to solve problems from other areas of mathematics. Code MA344 Module Title Groups II Semester 2 ECTS 5 Examination Arrangements Two hour examination The course covers monoids and groups and their actions. Topics covered include finite state machines, orbits and stabilizers, applications in combinatorics (e.g. vertex colourings), Sylow theory, finite simple groups. Code MA378 Module Title Numerical Analysis II Semester 2 ECTS 5 Examination Arrangements Two hour examination Polynomial interpolation and its applications in numerical integration, numerical differentiation, splines, and finite element methods for ODEs. Topics covered include: Polynomial interpolation and its applications: 1. 2. 3. 4. 5. 6. Lagrange and Hermite interpolation with error formulas. Runge's example. Linear and cubic splines (natural and variations). Newton- Cotes quadrature with error formulas. Orthogonal polynomials. Gaussian Quadrature. Finite element methods for ODEs. 39 Code CS402 MA492 / Module Title Cryptography Semester 2 ECTS 5 Examination Arrangements Two hour examination This course develops basic concepts in private and public key cryptosystems, explores some of the associated algorithmic number theory, and introduces more advanced topics such as the use of elliptic curves in cryptography. Code CS423 Module Title Neural Networks Semester 2 ECTS 5 Examination Arrangements Two hour examination An introductory course in Neural Networks. Topics include learning algorithms, memory, the Rosenblatt perception, back-propagation multilayer perceptrons, and the Hopfield network. Code MA461 Module Title Semester ECTS Examination Arrangements Probabilistic models for molecular biology 2 5 Two hour examination This course will cover the application of probabilistic modelling to several important problems in molecular biology and/or systems biology. We will begin with a review of Markov chains, including continuous-time chains and hidden Markov models. Applications of models such as these to key problems in molecular biology include the alignment of molecular sequences, the identification of genes in genomic sequences (gene-finding), finding genomic regions with shared epigenetic features, molecular phylogenetics, and the analysis of genome-wide genotype data (including the inference of population structure and the haplotype phasing problem). We will consider several such applications, moving from textbook examples to more recent developments from the current bioinformatics literature. Code MA482 Module Title Functional Analysis Semester 2 ECTS 5 Examination Arrangements Two hour examination This course introduces the theory of Linear Functional Analysis. The material covered includes Normed Spaces, Continuous Linear Operators, Normed Spaces of Operators, Dual Spaces, Inner Product Spaces, Orthogonal Complements and Direct Sums, Orthonormal Sets and Sequences, Representation of Linear Functionals on Hilbert Spaces and the Hilbert-Adjoint Operator. Code MA491 Module Title Field Theory Semester 2 ECTS 5 Examination Arrangements Two hour examination This course together with Ring Theory forms the basis of modern Abstract Algebra, and as such is part of the indispensible knowledge of an honours graduate in Mathematics, regardless of whether or not further mathematical studies are pursued. In particular Field Theory and Galois Theory provide answers for questions in mathematics which originate 2,000 years earlier in the case of Greek Geometry, and some 450 years ago relating to formulas for the roots of polynomials of degree 5 and higher. The notion of Galois correspondence occurs in other branches of modern and abstract algebra. More recently, with the wide applicability of Coding Theory and the search for optimal codes, the use of finite (Galois) fields has assumed a critical importance. 40 Code MP232 Module Title Numerical Analysis II Semester 2 ECTS 5 Examination Arrangements Two hour examination This is a mathematical methods course that considers the following topics: Laplace transforms, vector calculus, multiple integration and integral theorems. Topics covered include: 1. Laplace transforms: Laplace transforms of elementary functions, the shift theorems, inverse Laplace transforms, Laplace transforms of derivatives, the convolution theorem, solving initial value problems for ordinary differential equations using Laplace transforms. 2. Curves and line integrals. 3. The divergence, the gradient and the curl, conservative vector fields. 4. Parametrisation of surfaces, normal to a surface, tangent plane to a surface, surface integrals. 5. Volume integrals, the divergence theorem, examples. 6. Stoke's theorem, examples. Code MP237 Module Title Mechanics II Semester 2 ECTS 5 Examination Arrangements Two hour examination This course consists principally of an introduction to the theory and applications of partial differential equations. Topics covered include the heat equation, the wave equation, Laplace's equation, and a brief introduction to the special theory of relativity. Content includes: 1. An introduction to partial differential equations, the heat equation as a model for heat flow, boundary conditions, initial conditions, well-posed problems, separable variable solutions of the heat equation. 2. The wave equation as a model for the vibrations of a string, characteristic variables for the wave equation, the general solution of the one-dimensional wave equation, D'Alembert's solution, solution of the wave equation on a semi-infinite domain using characteristic variables, solution of the wave equation on a finite domain using the method of separation of variables. 3. Laplace's equation in two dimensions, solutions to Laplace's equation in rectangular domains using the method of separation of variables. 4. Introduction to the theory of special relativity, Einstein's two postulates of special relativity, the Lorentz transformation, length contraction, time dilation, the velocity transformation, relativistic mass, momentum and energy, the transformation law for momentum and energy. Code MP307 Module Title Modelling II Semester 2 ECTS 5 Examination Arrangements Two hour examination This course introduces the student to modelling techniques for three different real-world problem areas: queuing theory, population dynamics and control theory. The topics covered include: 1. Queuing theory: Markov processes, ergodic systems and nearest-neighbourhood models. 2. Population dynamics: Fibonacci numbers, age-cohort models, Verhulst predator satiation, competitive species, Lotka-Volterra model, Ricker model and the Kermac-McKendrick model. 3. Control theory: stability analysis and pole-placing methods 41 Code MP357 Module Title Quantum Mechanics II Semester 2 ECTS 5 Examination Arrangements Two hour examination This is a follow-on to the introductory Semester 1 course in quantum mechanics MP356. Topics covered include: 1. 2. 3. 4. 5. 6. 7. 8. Introduction to the 2 and 3- d Schrodinger equation and wave functions. Spherically symmetric potentials and derivation of spherical harmonic functions. Derivation of the energy eigenvalues and eigenvectors for the hydrogen atom. Angular momentum in quantum mechanics. Algebraic computation of the angular momentum eigenvalues and eigenvectors. Relationship to spherical harmonics. Spin in quantum mechanics. Spinors and spin-statistics. Rotation of spinors. Measurement in quantum mechanics and hidden variables theory, the EPR paradox. Bell's theorem and inconsistency of hidden variables theory and quantum mechanics. Code MP403 Module Title Cosmology and General Relativity Semester 2 ECTS 5 Examination Arrangements Two hour examination In the study of cosmology where gravitation is the dominant force over the large scales considered, general relativity is the basic component. This course introduces general relativity. Topics covered include geometry, geodesics, black holes, different model universes and cosmogony. Topics covered include: 1. Review of Newtonian mechanics and Special Relativity. 2. Geometry: intrinsic and extrinsic definitions of curvature, the metric tensor, Gauss curvature formula. 3. Geodesics: the variational method, using the Euler-Lagrange equations to calculate geodesics. 4. General Relativity: the postulates of General Relativity; Einstein's field equations, derivation of the Schwarzschild solution of Einstein's field equations using physical arguments. 5. Cosmology: the cosmological principle, derivation of the Robertson-Walker line element, object and event horizons, the Friedman equation, cosmogony. Code MP491 Module Title Nonlinear Systems Semester 2 ECTS 5 Examination Arrangements Two hour examination This course is an introduction to the analysis of systems of nonlinear Ordinary Differential Equations (ODEs) and Maps. Topics covered include: 1. 1-dimensional differential equations: equilibria, stability, bifurcations. 2. 2-dimensional linear systems of ODEs: equilibria, stability, phase-plane portraits. 3. 2-dimensional nonlinear systems of ODEs: equilibria, linearisation, linear stability, phase-plane portraits. 4. 2-dimensional Hamiltonian systems: equilibria, stability, phase-plane portraits. 5. Limit cycles: Hopf bifurcations, stability. 6. 1- Dimensional difference equations and maps cycles: fixed points, periodic orbits, stability, bifurcations. 42 Code ST236 Module Title Statistical Inference Semester 2 ECTS 5 Examination Arrangements Two hour examination This course provides and introduction to the ideas and mathematics of statistical inference. Topics covered include: 1. 2. 3. Basic notions: populations and samples, sampling distributions, estimates and estimators, the likelihood function. Point estimation: general concepts, criteria including consistency, unbiasedness, minimum variance; methods of constructing estimators, unbiased estimation and MVUE, method of moments, maximum likelihood. Hypothesis testing: simple and composite hypotheses, type I and type II error, size and power, most-powerful tests, Neyman Pearson Lemma, uniformly most powerful tests, Likelihood ratio tests. Code ST238 Module Title Introduction to Statistical Inference Semester 2 ECTS 5 Examination Arrangements Two hour examination This module provides a basic introduction to statistical inference, capitalising on students' prior knowledge of descriptive statistics and basic probability. Topics covered are: 1. Difference between Probability and Statistics and the role of Probability in solving statistical inference problems. 2. Explanation of statistics through practical examples of its applications. 3. Review of normal distributions and the sampling distribution of the mean. 4. Concepts of point and interval estimation; concepts in hypothesis testing including Type I and Type II errors, p-value and power. 5. Confidence intervals and hypothesis tests about a single population mean, a single population proportion, the difference between two population means and a single population variance. 6. The analysis of enumerative data, including chi-squared goodness-of-fit and contingency table tests. 7. Correlation and linear regression analysis, including least squares estimation of the parameters of the simple linear regression model, inferences about these parameters, and prediction. 8. Some survey and experimental designs. Code ST312 Module Title Applied Statistics II Semester 2 ECTS 5 Examination Arrangements Two hour examination This module continues with demonstration in applied statistics with applications in experiment design, modelling techniques for a qualitative response and methods in the analysis of a multivariate response. The analysis is demonstrated with the use of statistical software, MINITAB. Topics discussed in experiment design include confounding of variables, randomization and blocking, and the analysis of data produced from experiments with a completely randomized design, a randomized block design and two-factor studies with interaction effects. Modelling techniques for a qualitative response include logistic regression and generalized linear models. Methods in the analysis of a multivariate response include topics from, principal components analysis, cluster analysis, time series analysis. 43 Nanotechnology and New Materials Code Module Title Semester ECTS Examination Arrangements CH307 Inorganic Chemistry 2 5 Two hour examination Insights into the specific roles of metals and ligands in the broad fields of coordination chemistry, material science and biochemistry are given. Specific areas to be discussed include organometallic complexes, inorganic kinetics and bioinorganic chemistry. Practicals related to this course are available in Experimental Chemistry II. Code Course Semester ECTS Examination Arrangements PH338 Properties of Materials 2 5 Two hour examination This course provides a comprehensive introduction to the physics of materials. The mechanical, thermal, electronic, and optical properties of “hard” and “soft” condensed matter are introduced using concepts primarily based on classical physics with some quantum concepts where appropriate. Code Module Title Semester ECTS Examination Arrangements PH429 Nanotechnology 2 5 Two hour examination This course provides a comprehensive review of the electronic and optical properties of nanostructures. The course describes the physics of low-dimensional structures using concepts based on quantum mechanics. The course also provides a comprehensive review of the bottom-up and top-down processing techniques used to fabricate nanostructures. Structure of nanoscale materials: surface to volume atomic ratio, important length scales, confinement regimes, types of nanostructures. Optical absorption & emission in nanostructures. Quantum mechanical review for nanostructures. Application of quantum mechanics for problems involving for quantum wells, nanowires, and quantum dots using Cartesian, polar, and spherical coordinates. Application of non-degenerate, time independent, perturbation theory to a particle in a modified box. Density of states for nano-scale structures. Time-dependent perturbation theory, Fermi’s golden rule. Two-level system. Optical transitions in nano-scale structures Synthesis and characterisation: Top-down: Nanoelectronics, semiconductor wafers, dopant diffusion, ion implantation, and epitaxy, thin film dielectrics, lithography. Fabrication of bipolar and field effect integrated circuits. Nanophotonics Description of heterogeneous vapour phase epitaxy. Description of surface diffusion, surface alloys, strained epitaxy and self-assembled structures. Bottom-up: Nanobio synthesis and functionalisation of colloidal nanoparticles. Nanometrology: Scanning-probe, and electron microscopies, atomic-force microscopy and X-ray diffraction for atomic-scale metrology. 44 Marine Sciences Code Module Title Semester ECTS Examination Arrangements BPS202 Fundamentals in Aquatic Plant Science 2 5 Two hour examination This module will introduce key aspects of the biology of aquatic photosynthetic organisms including seaweeds, microalgae and other aquatic plants. In particular it explores the aquatic environments including lakes and marine systems as habitats for aquatic plant and algal growth and provides fundamentals of algal diversity, functionality and ecology, and plant/algal environment interactions. On successful completion of this module the learner should be able to: Outline and appreciate the importance of different algal groups (including both microalgae and macroalgae) in ecology and their applications in biotechnology Describe and characterise environments (terrestrial, freshwater, marine) suitable for algal growth, with particular detail on growth requirements and controlling factors regarding seaweeds and phytoplankton Appreciate the diversity of different algal groups, their distinguishing biological features including morphological growth forms, and identify common representatives of native Irish algal groups Describe and appreciate the different interactions between algae and their abiotic (physical, chemical) and biotic (living) environments Describe the origin and relationships between different photosynthetic organisms Understand key physiological processes in algae and their modifications to different environmental challenges Minerals Code Course Semester ECTS Examination Arrangements EOS225 Optical Microscopy of Minerals and Rocks 2 5 Two hour examination This module demonstrates how the petrographic microscope is used to identify minerals and study the textures of igneous, metamorphic and sedimentary rocks in thin section. It uses the wave theory of light to explain how polarised light interacts with the crystal structure of rock forming minerals. Optical properties of minerals and rock textures are studied and recorded during practicals. 45 Pharmaceuticals Code Module Title Semester ECTS Examination Arrangements CH202 Organic Chemistry 2 5 Two hour examination In this module the students will learn about organic chemical functional groups and their reactions & reactivity, building on the knowledge gained in year one. There will be a theory and practical component. The theory component will deal with mechanism, reactions, reactivity and structure. In the practical component basic synthetic and analytical techniques used in the organic chemistry laboratory will be introduced. Pure and Natural Sciences Code Module Title Semester ECTS Examination Arrangements CH313 Physical Chemistry 2 5 Two hour examination This course comprises lectures and tutorials, and expands upon the fundamentals of physical chemistry covered in years 1 and 2. Chemistry of molecular interactions, gas-solid interactions, thermodynamics of phase transitions, chemical kinetics, basic principles of electrode kinetics, spectroscopy and quantum chemistry are covered. The course emphasizes chemistry of interest to modern day chemists. Code Module Title CH335 Industrial Chemistry Semester ECTS 2 5 Examination Arrangements Two hour examination Detailed insights into the inner workings of the chemical and pharmaceutical industry are given, including specific exampls of chemistry carried out in industry. Code Module Title CH432 Physical Chemistry 2 Semester ECTS 2 5 Examination Arrangements Two hour examination This module deals with some topics in physical chemistry which include: statistical thermodynamics, fluorescence spectroscopy, surface analysis and heterogeneous catalysis. Code CH439 Module Title Mechanisms, Polymer Chemistry and Photochemistry Semester ECTS 2 5 Examination Arrangements Two hour examination The module deals with the structure and reactivity of radicals and their use in modern organic and polymer synthesis. The other major classes of polymerization are also considered. The module discusses the basic photophysics of organic molecules and the synthetic photochemistry of a range of functional groups. The use of frontier orbitals in predicting the outcome of radical and pericyclic reactions is described. 46 Code CH448 Module Title Spectroscopic & Physical Methods and Application Semester ECTS 2 5 Examination Arrangements Two hour examination A course on the use of spectroscopy and (bio)physical methods in Chemistry and Biopharmaceutical Chemistry. The topics include applications of fluorescence microscopy, NMR, mass spectrometry and other spectroscopies and methods in analysis of a range of different molecule types, including their structure and interactions. Code Module Title Semester ECTS Examination Arrangements CS428 Advanced Operating Systems 2 5 Two hour examination This course introduces the basics of parallel computing. Topics covered include parallel computing platforms and networks; parallel algorithm design and parallel programming in both homogeneous and heterogeneous systems. On successful completion of this module the learner should be able to: 1. 2. 3. 4. 5. 6. 7. Reason about different logical and physical organisation of parallel platforms; Apply decomposition techniques to parallelise serial algorithms; Implement fundamental algorithms in MPI; Calculate speedup, and derive Amdahl's law; Describe and use parallel algorithms for dense matrix multiplication; Describe and use parallel algorithms for sorting; Implement matrix algorithms with CUDA. Code Course EOS104.II Introduction Sciences B to Earth and Ocean ECTS Examination Arrangements 5 Two hour examination This module will introduce students to the breadth of topics covered in Earth & Ocean Sciences. It assumes no previous knowledge of subjects such as geography. It will outline the following: The Solar System; Earth’s Structure; Oceanography; Hydrogeology; Earth’s Crust; Tectonics; The Biosphere; Geoenvironments and Natural Hazards. The lecture course will be linked to practical sessions in a choice of one out of four time-slots per week. Structure Solar system, galaxies and stars, the Sun, the planets. Gravity and Earth rotation, seismic structure, magnetic field. Evolution of atmosphere, chemical and physical oceanography. Hydrogeology, the water cycle, ground water and its protection. Minerals and rocks, Geological time, surface processes. Seafloor spreading, plate tectonics, dating of rocks Evolution of organisms, fossils. Energy resources, Irish ore deposits, natural hazards. 47 Code Course Semester ECTS EOS108 Geology of Ireland 2 5 Examination Arrangements Continuous practical assessment (40%) and 2 hour examination (60%) This module investigates the geological history of Ireland, relating past plate tectonic settings to modern analogues. The practical component of the module will integrate geological maps from Ireland with the identification of rocks and minerals. Students may attend a (2 day, weekend) field trip as part of this module. Lecturer: Delivery: Assessment: Venue: Weighting: Dr Sadhbh Baxter Lectures and practical: Geological Case studies Continuous practical assessment (40%) and examination in semester 2 (60%). A206, Quadrangle 5 ECTS NOTE: this is a module that is part of an evening Diploma course. Classes take place at 6.30-9.30 on Thursday evenings. Coffee break included! Code Course Semester ECTS EOS205 Gemstones and the Commercial World 2 5 Examination Arrangements Continuous practical assessment (40%) and 2 hour examination (60%) This module investigates Gemstones and Jewellery and examines aspect linked to the commercial world. Diamond and its simulants (e.g. cubic zirconia), Diamond Grading, Treated Gemstones, Artificial and Synthetic Gems are studied. The main principles of Valuation Science are also considered. The practical component of the module will include observation of rough and cut gemstones. Lecturer: Delivery: Assessment: Venue: Weighting: Dr Alessandra Costanzo Lectures and practical Continuous practical assessment (40%) and examination in semester 2 (60%). A206, Quadrangle 5 ECTS NOTE: this is a module that is part of an evening Diploma course. Classes take place at 6.30-9.30 on Wednesday evenings. Coffee break included! Code Course Semester ECTS Examination Arrangements EOS222 Ancient Earth Environments 2 5 Two hour examination The course will cover: the principles of stratigraphy; origin of sediment; classification of sedimentary rocks; texture and composition of sandstones; transport of sediment; interpretation of depositional environments; Irish geological history; fluvial, shallow and deep marine environments; modern and ancient glaciations; extra planetary sedimentology; biochemical sediments 48 Code Course Semester ECTS Examination Arrangements EOS223 Introductory Palaeontology and Evolution 2 5 Two hour examination This module will introduce students to the science of palaeontology and will examine all of the major animal groups, who have left their mark in the fossil record. Code Course EOS224 Crystallography and Mineralogy Semester ECTS 2 5 Examination Arrangements Two hour examination This module explores the morphology of crystals and the chemistry and atomic structures of the main rock forming minerals. A detailed study of forms and symmetry across the seven crystal systems is linked to the chemistry and structure of the major rock forming minerals in particular the members of Silicate group. Code Course Semester ECTS Examination Arrangements EOS406 Natural and Manmade Hazards 2 5 Two hour examination This course examines the science of natural hazards such as earthquakes, tsunamis and hurricanes. Presentations investigate the causes and effects of these phenomena, discusses their predictability and the potential risks to human activity, and how this knowledge influences policy making. A particular focus is on how human activities and Manmade hazards (e.g. Radioactivity, Pollution) can increase the risk associated with natural hazards Code Course Semester ECTS Examination Arrangements EOS417 Petrotectonics 2 5 Two hour examination This module explores linkages between petrology (igneous, metamorphic and sedimentary rocks) and plate tectonics (i.e. petrotectonics). It interrogates the evolutionary history of the Earth’s lithosphere with emphasis on cratons. It tracks plate tectonics with time by investigating well documented petrotectonic assemblages in the geological record. It will address the question: how far back in time are the same petrotectonic assemblages found today, and are their time/space relationships, tectonic histories and chemical compositions similar to modern assemblages. Data, linked to quantitative modeling sessions, taken from geochronology, geothermobarometry and pressuretemperature–time (P-T-t) paths will be used to understand petrotectonic processes. Code Course Semester ECTS Examination Arrangements EOS418 Applied Field Hydrology 2 5 Two hour examination Groundwater is one of our key water resources, yet it also one that is stressed by natural processes and human activities. Managing groundwater is a mix of science, regulation and politics. This course focuses on understanding groundwater in its geological setting and explores the ways in which groundwater affects and is affected by the medium in and through which it flows 49 Code Course Semester ECTS Examination Arrangements EOS419 Applied and Marine Geophysics 2 5 Two hour examination This module will introduce students to a series of passive geophysical remote sensing techniques for exploring the near-surface of the Earth and the active and passive geophysical methods methods for the monitoring the Seabed. The results will be used to explain the physical processes beneath the surface and how these can aid the monitoring of geo-hazards and management of near-surface resources for example mineral exploration and seabed habitate mapping. Code Course Semester ECTS Examination Arrangements EOS422 Sedimentary Basins 2 5 Two hour examination Sedimentary basins comprise a long time-scale record of environmental change on the earth’s surface and are also hugely economically important. Almost all commercial hydrocarbons are contained within sedimentary basins – they also comprise groundwater aquifers and potential sites for sequestered carbon dioxide. This module will investigate the origin, evolution and architecture of sedimentary basins, and examine in detail the variety of techniques which are used in basin analysis. Code Course ECTS Examination Arrangements MP232 Mathematical Methods II 5 Two hour examination This course is a continuation of “MP231-Mathematical Methods I” Topics covered include: 1. 2. 3. 4. 5. Laplace Transforms; Applications of Laplace transforms to the solution of Linear Ordinary Differential Equations; Vector calculus; grad, div and curl; Line integrals, conservative vector fields, surface integrals, triple integrals; Integral theorems: Divergence theorem, Stokes’ theorem. Code Course ECTS Examination Arrangements MP237 Mechanics II 5 Two hour examination 1. An introduction to partial differential equations, the heat equation as a model for heat flow, boundary conditions, initial conditions, well-posed problems, separable variable solutions of the heat equation. 2. The wave equation as a model for the vibrations of a string, characteristic variables for the wave equation, the general solution of the one-dimensional wave equation, D’Alembert’s solution, solution of the wave equation on a semi-infinite domain using characteristic variables, solution of the wave equation on a finite domain using the method of separation of variables. 3. Laplace's equation in two dimensions, solutions to Laplace's equation in rectangular domains using the method of separation of variables. 4. Introduction to the theory of special relativity, Einstein's two postulates of special relativity, the Lorentz transformation, length contraction, time dilation, the velocity transformation, relativistic mass, momentum and energy, the transformation law for momentum and energy. 50 Code Course ECTS Examination Arrangements MP307 Modelling II 5 Two hour examination This course introduces the student to modelling techniques for three different real-world problem areas. The problems cover the topics queuing theory, population dynamics and control theory. This is a course on mathematical modelling of some real-world systems. The topics covered include: 1) Queuing theory: Markov processes, ergodic systems and nearest-neighbourhood models. 2) Population dynamics: Fibonacci numbers, age-cohort models, Verhulst predator satiation, competitive species, Lotka-Volterra model, Ricker model and the Kermac-McKendrick model. 3) Control theory: stability analysis and pole-placing methods. Code Module Title Semester ECTS Examination Arrangements MP346 Mathematical Methods II 2 5 Two hour examination This is a mathematical methods course, and amongst the topics considered are the heat equation, Laplace's equation, Sturm-Liouville theory, the Fourier transform, and the numerical solution of partial differential equations using finite difference techniques. This is a follow on to the course Mathematical Methods MP345. Topics covered include: I. II. III. IV. V. The 1-dimensional heat equation. Introduction to Initial Value Boundary Value Problems. Solution for various boundary conditions and initial conditions. Sturm-Liouville Systems. General properties and application to simple systems. The 2-dimensional Laplace equation. Solution for various boundary conditions on a rectangular or rotationally symmetric region. The Fourier Transform. Properties, the inverse transform. Application to solving the 1-dimensional heat equation on an infinite region. Finite difference methods. Application to numerically solving the 1-dimensional heat equation. Stability of numerical method. Code Module Title Semester ECTS Examination Arrangements MP403 Cosmology & General Relativity 2 5 Two hour examination In the study of cosmology where gravitation is the dominant force over the large scales considered, general relativity is the basic component. This course introduces general relativity. Topics covered include geometry, geodesics, black holes, different model universes and cosmogony. I. II. III. IV. V. Introduction: review of Newtonian mechanics and Special Relativity; Geometry: intrinsic and extrinsic definitions of curvature, the metric tensor, Gauss curvature formula; Geodesics: the variational method, using the Euler-Lagrange equations to calculate geodesics; General Relativity: the postulates of General Relativity; Einstein’s field equations, derivation of the Schwarzschild solution of Einstein’s field equations using physical arguments; Cosmology: the cosmological principle, derivation of the Robertson-Walker line element, object and event horizons, the Friedman equation, cosmogony. 51 Code Module Title Semester ECTS Examination Arrangements MP491 Nonlinear Systems 2 5 Two hour examination This course is an introduction to the analysis of systems of nonlinear Ordinary Differential Equations (ODEs) and Maps. This course is concerned with systems of nonlinear Ordinary Differential Equations (ODEs) and Maps. Topics covered include: 1. 1.1-dimensional differential equations: equilibria, stability, bifurcations; 2. 2-dimensional linear systems of ODEs: equilibria, stability, phase-plane portraits; 3. 2-dimensional nonlinear systems of ODEs: equilibria, linearisation, linear stability, phase-plane portraits; 4. 2-dimensional Hamiltonian systems: equilibria, stability, phase-plane portraits; 5. Limit cycles: Hopf bifurcations, stability; 6. 1-dimensional difference equations and maps cycles: fixed points, periodic orbits, stability, bifurcations. Code Module Title Semester ECTS Examination Arrangements PH108 Physics 2 5 Two hour examination MECHANICS [7]: Introduction; Displacement; Speed and Velocity; Acceleration; Kinematics; Free fall; Force and Mass; Newton’s Laws; Gravitation; Work; Energy; Energy; Power FLUIDS [3]: Density; Pressure; Pascal’s Principle; Archimedes’ Principle; Fluids in Motion; Equation of continuity; Bernoulli’s Equation; Viscous Flow TEMPERATURE AND HEAT [3]: Specific Heat Capacity; Phase Change; Humidity; Convection; Conduction; Radiation WAVE AND SOUND [3]: Nature of Waves; Sound; Intensity; Doppler Effect ELECTRICITY AND MAGNETISM [7]: Electric Charge; Insulators and Conductors; Coulombs Law; Electric Fields; Electric Current; Resistance; Electric Power; Direct Current; Alternating Current; Circuits, Electric circuits; Magnetism OPTICS [5]: Nature of Light; Electromagnetic Waves; Reflection; Mirrors; Image Formation; Refraction of Light; Lenses; Interference; Young’s Double Slit Experiment; Diffraction ATOMIC AND NUCLEAR [5]: Wave-particle Duality; Blackbody Radiation; The Photoelectric Effect; Models of the Atom; Photon Absorption and Emission; X-rays; Lasers; The Nucleus; Radioactivity Code Module Title Semester ECTS Examination Arrangements PH140 Engineering Physics 2 5 Two hour examination The aim of this module is to equip the learner with basic knowledge, skills and associated with the fundamentals of a range of topics in engineering physics. The Experimental Method: Units, measurement, experimentation, units, significant figures Heat and Temperature Acoustics and Optics: Waves, ultrasound Electromagnetic waves: EM spectrum, Doppler effect, polarisation Geometrical optics: reflection and refraction, mirrors, thin lenses, optical instruments competences 52 Diffraction Interference Applications Electricity and Magnetism: Electric potential, current, energy, electric forces and fields Ohm's Law Insulators, conductors, semiconductors: diode: structure, behaviour Applications Atomic and Nuclear Physics: Photoelectric effect, quantum theory Line spectra X-rays Lasers Nucleus, nuclear energy Radioactivity Applications Assumptions: Bohr atomic model (Chemistry) Pre-requisite: mechanics is taught in SE 1 or early SEM 2 (applied Maths) Code Module Title PH150 Introduction to Physics Semester ECTS 2 5 Examination Arrangements Two hour examination The aim of this module is to equip the learner with an overview of some of the basic rules of nature that physical systems follow. The student will learn how to express these rules in simple mathematical form and to apply these rules to solve simple problems. They will also learn how to make measurements in the physics laboratory. They will acquire transferable skills in measurement, numeracy and analysis. Code Course Semester ECTS Examination Arrangements PH217 Light, Atomic and Nuclear Physics 2 5 Two hour examination This module builds on content delivered in the general PH101 Physics course, given in First Year, to provide a more in-depth look at Light, Atomic Physics and Nuclear Physics. Students will learn to solve problems on various concepts (homework assignments), with tutorials and in-class problem solving examples. Code Course Semester ECTS Examination Arrangements PH218 Thermodynamics 2 5 Two hour examination This module provides a thorough review of thermodynamics based on classical physics. It includes topics such as temperature & heat, thermal properties of matter, and first and second laws of thermodynamics. The module will also consider some computational methods with applications to thermodynamics problems. 53 Code Module Title Semester ECTS Examination Arrangements PH223 Observational Astronomy 2 5 Two hour examination This module provides a broad survey of how astronomers make observations of the universe. It addresses the telescopes, optical designs, instruments, detectors, observable quantities, natural limiting factors, and techniques of observational astronomy. It covers the full electromagnetic spectrum of wavelength regimes, from radio waves through to gamma rays, plus neutrino particles. It investigates what can we learn by observation in each of the main information domains – imaging (spatial), spectroscopy (energy), and time-resolved (temporal). Telescope Systems: Telescope Optical Principles; Telescope designs; Telescope Mountings. Light Detection & Detectors: Poisson statistics; Noise sources; Signal to Noise; Charged-Coupled Devices (CCDs) Stellar Photometry: Magnitude system; Photometric Systems & Colour Indices; Interstellar and Atmospheric effects. Spectroscopy: Spectrograph designs; Spectral Resolution & Range; Calibration. Observing Practice: Planning & Making observations; Image Processing basics. Observing in the Infra-Red; IR Spectral Bands & Filters; IR Instruments; Adaptive Optics. Observing in X-rays: X-ray Telescopes and Detectors; X-ray Emission Processes. Radio Astronomy: Radio telescopes; Radio Interferometry. Other Regimes: Ultraviolet (UV) Astronomy; Millimetre/Sub-Millimetre Astronomy; Gamma-ray and Cosmic Ray Astronomy; Neutrino Astronomy. Code Module Title Semester ECTS Examination Arrangements PH329 Physics of the Environment II 2 5 Two hour examination This course responds to the need to understand the physics behind environmental challenges such as fossil fuel combustion and its associated atmospheric pollution burden, renewable energy technology, nuclear power, nuclear accidents and radiation protection. Code Course Semester ECTS Examination Arrangements PH335 Nuclear and Particle Physics 2 5 Two hour examination In this module students learn how subatomic particles form nuclei, study nuclear properties, and radioactive decay, and see how nuclear energy may be released in fission and fusion processes. Students also study fundamental particles, which are the building blocks of nature, and consider the ways in which these particles interact with each other. Prior knowledge is assumed to the level of material covered in PH2X3 Light, Atomic & Nuclear Physics and PH3X3 Quantum Physics. Code Course Semester ECTS Examination Arrangements PH337 Thermal Physics 2 5 Two hour examination This module provides a comprehensive microscopic interpretation of the laws of thermodynamics based on statistical mechanics and probability theory. Some principles of quantum physics are included. 54 Code Course Semester ECTS Examination Arrangements PH362 Stellar Astrophysics 2 5 Two hour examination A comprehensive model for stellar structure and evolution is developed and used to understand star formation, evolution and destruction and the properties of extra solar planets. Code PH424 Module Title Electromagnetism Relativity and Semester ECTS Examination Arrangements 2 5 Two hour examination Special This module will be an in-depth course on Electromagnetism and Relativity, building on previous courses, in particular PH2X1 Electricity, Magnetism & Circuits and PH2X3 Light, Atomic & Nuclear Physics. The course will include continuous assessment (MCQ), with short problems involving basic concepts. Students will also learn to solve advanced problems on both electromagnetism and relativity (homework assignments), featuring more advanced and lengthy problems from David Griffiths’ book “Electrodynamics”. Code Module Title Semester ECTS Examination Arrangements PH425 Lasers and Spectroscopy 2 5 Two hour examination This module will provide students with an in-depth introduction to several aspects of Photonics. Particular emphasis will be placed on atomic spectroscopy and the interaction of radiation with atoms. The operation of lasers and conditioning of laser radiation will also be developed. Optical Spectroscopy of atoms, molecules and solids. Interaction of radiation and atoms. Stimulated and spontaneous processes. Line broadening. Optical modulation. Optical resonators and conditions for optical gain & laser action. Properties of typical gas, liquid & solid-state lasers. Code ST412 Module Title Stochastic Processes Semester 2 ECTS 5 Examination Arrangements Two hour examination The goal of the course is to introduce the main ideas and methods of stochastic processes with the focus on Markov chains (processes with discrete time index and finite state space). The topics include: 1. A review of probability theory: Discrete and continuous random variables (r.v.), joint and conditional distributions, expectations, variance, sums of iid r.v.-s, conditional expectation. 2. Probability generating functions, moment generating functions 3. Random sums of r.v.-s. 4. Branching processes. 5. Markov property and Markov chains (MC): Random walk with absorbing barriers (Gambler’s ruin); Classification of states for a finite discrete Markov chain; Stationary and limiting prob. distribution of Markov chains; Random walk in 2 and more dimensions; Mean first passage times. 6. Poisson process (independent increments formulation; inter-arrival times formulation). 7. Applications of stochastic processes in finance, bioinformatics, computer science. 55 Code ST417 Module Title Introduction to Bayesian Modeling Semester 2 ECTS 5 Examination Arrangements Continuous Assessment, Two hour examination This is an introductory course to statistical modelling focusing in part on simulation based inference and Bayesian methods. A prerequisite for this course is basic knowledge of probability and a year of calculus. Helpful but not necessary for successful study would be if students have already taken an introductory course in statistics or regression analysis. As a programming tool we shall use and learn statistical package R. Topics will include: Review of basic probability concepts (events, sample spaces, concept of random variable, distributions, expectation and variance, central limit theorem); Likelihood based inference; Priors, posteriors, predictive models. Bayesian inference in simple hierarchical models; Basic sampling techniques; Markov Chain Monte Carlo and Gibbs sampling; Bayesian hierarchical models for regression analysis. Code Module Semester ECTS Examination Arrangements TI255 Earth Surface Landforms and Processes 2 5 Continuous assessment This course covers the fundamentals of geomorphology. It will look at landscape form and function, working through from the theoretical understanding of the landscape to hands-on practical field work. A core aspect of the course will be the systems approach, emphasising the interconnectedness of the physical and biological components of our environment and the role humans play in shaping these systems. Code Module Semester ECTS Examination Arrangements TI308 Quaternary Environments 2 5 Continuous Assessment hour examination & 2 Earth’s climate has rarely been stable, and is generally in a dynamic state of change. This variability occurs at many different spatial and temporal scales, but we generally lack long enough scientific or historical records to directly measure most long-term patterns of climate change. Quaternary Studies fills this void by offering evidence of climate conditions during the last ~2 million years (the most recent geologic period), providing a broader context for studying modern environmental phenomena. This course offers an overview of the Quaternary in three phases. The first section of the course situates the Quaternary within a broad history of Earth’s climate, discussing Quaternary glaciations and conditions during and since the last Ice Age in detail. The second section of this course reviews the myriad of methodologies that are utilized to reconstruct past conditions, focusing on how these methods are used as windows into the past. Finally, as climate variability has impacted past and present human societies (and vice-versa), we will assess human/environment relationships during the Quaternary and explore modern anthropogenic climate change using a palaeoclimatological perspective. Field Trip – We will spend a day viewing evidence of Quaternary processes and Quaternary climate change in Connemara on Friday 1st March. Students will write a short essay (~1000 words) using field evidence, hand-out and supplementary readings provided on the field trip. Field Trip Essays are due by Thursday 14th March. Group Lab Report – I will extract a sediment core from a marsh site near Corrib Village during lecture at 2:00 pm on 11h March. The core will be displayed in the School of Geography and Archaeology Teaching Lab (AC 117) on 12th March. All students will observe core extraction, and will work in groups to measure, describe and attempt to interpret the sediment core stratigraphy. Groups of four will be assigned alphabetically, and students will sign up for lab time slots during week 9. Lab reports will be 56 written as short scientific papers (~1000 words plus figures/tables) and consist of Introduction, Methods, Results and Discussion sections. Group Lab Reports are due by Thursday 28th March. Code Module Title Semester ECTS Examination Arrangements PH432 Project 2 10 Continuous Assessment In this module, a student is assigned a research project, and carries out supervised research in the assigned topic over Semester 2. Each student prepares a detailed report, and makes a short presentation, on their project work. The report and presentation should be at a level corresponding to the presentation and publication of results at a scientific conference. Renewable Energy Code Module TI226 Environment Planning and Semester ECTS Examination Arrangements 2 5 Continuous Assessment & 2 hour examination Tourism is a phenomenon that is inherently geographical. It involves movement of people between places and multi dimensional environmental resource uses which incorporate cultural, economic, physical and social elements. Significant reductions in the cost of international travel and increased leisure time, particularly in contemporary western societies, have contributed to increased tourism activity nationally and internationally and the demand for recreational experiences. This module discusses key concepts relating to the geographies of contemporary tourism. The concepts and examples are explored through issues such as the relationships between tourism and recreation; the demand for tourism; the supply of tourism facilities; commodification for tourism and recreation; issues of sustainability; policy and planning issues. Objectives The course has three main objectives: To examine key features of contemporary tourism, and to locate them within broader processes of local-global interaction; achieve a more advanced level of understanding of the spatial processes at work; To support individual study and research by providing a knowledge base and understanding of the role of theory and concepts in the context of the geography of tourism. Learning outcomes Critical awareness of tourism as a spatial practice Critical awareness of the role of theory in providing understanding of the spatial dimensions of tourism 57 Sustainable Agricultural Production Code Course Semester ECTS Examination Arrangements BPS204 Genetics and AgriBiosciences 2 5 Two hour examination Since the origin of agriculture ten thousand years ago, innovations in genetics and agricultural (plant & livestock) biosciences have continued to play a critical role in ensuring future food security and sustainable development on our planet. This module provides cutting-edge training in genetics (plants, animals) and in agricultural biosciences, using case studies of major scientific advances and biochallenges. This module provides the student with training on the latest cutting-edge science regarding artificial vs. natural selection; origins of agriculture; crop and livestock domestication genetics; evolution of crops and livestock; major crop and livestock species & farming systems; plant and animal genetics; plant and livestock breeding, genetic resources & gene pools; genetic engineering; GMOs/GM crops/animals, agricultural biochemistry & systems biology; agricultural geochemistry; agri and food microbiology; tree biology (timber, forestry); plant-based bio refinery & bio-economy; agriculture, food security and global sustainable development challenges. This module will help the student to understand how "classical" breeding methods may have led to the selection of crops that are sensitive to environmental stresses, including how this may be a major problem regarding climate change and the need for more food in the coming years. Students will gain an appreciation of how recent advances in genetics, biochemistry and biosciences might help to resolve this issue. Code Course Semester ECTS Examination Arrangements BPS305 Plant and Agricultural Genetics 2 5 Two hour examination This module provides training in fundamental and applied genetics in relation to plants (crops) and animals (livestock), including molecular agricultural biotechnologies. Conventional, molecular, population and quantitative genetics aspects will be covered, including the latest advances in genetics, genomics, genetic modifications and applied systems biology as applied to crops and livestock. This module provides advanced training in plant and livestock genetics from the context of agricultural biosciences and biotechnologies. The module will cover topics such as: Mendelian genetics, population genetics, quantitative genetics, genomics, plant and animal breeding approaches, genotype by environment interactions (G X E) transgenic (GM) crops and livestock, genetic engineering methods and advances, chromosome engineering & polyploidy, reproductive biotechnologies (livestock, crops), genetics of reproduction and seed development, genome-wide association mapping, genomic selection, heterosis, epigenetics, model organisms for agricultural genetics, metabolic engineering, systems biology, agricultural pathogens. Students will engage in tutorials presenting and discussing scientific research papers on the latest advances in plant and animal genetics, and will conclude the module with a mini-conference event using an Ignite rapid presentation format. Students with a particular interest in genetics would be encouraged to take this module in association with the complementary 3rd year modules on (a) Human and Biomedical Genetics and (b) Prokaryotic Genetics available within the undenominated BSc degree. 58 Module Code TI151 Module Description Semester ECTS Examination Arrangements Principles of Physical Geography 2 Two hour written examination 5 Semester 1 students are introduced to physical geography. Here, insight to, and understanding of, the fundamental concepts and principles of physical geography; how the physical environment functions, how different environmental systems interact and how the physical environment impacts on human activities are all central. In considering the various building blocks that make up these environmental systems, such as atmosphere, landforms and the biosphere, the course provides an initial understanding of these fundamental components and an insight into the richness of the physical geography of Ireland and beyond. This introductory course in physical geography aims to: Introduce students to fundamental concepts and principles of physical geography; Encourage students to understand the natural world around them; Explore how geographers have gained knowledge of the natural world and have contributed so much to this understanding; Provide an insight into the myriad processes at work in the natural world; Provide students with an insight into aspects of the rich physical geography of Ireland. On completion of this course students will be able to: Outline key ideas used by geographers in their attempt to understand the natural world; Consider how the natural world operates in terms of features and processes and how these interlink; Explain core ideas in biogeography (the biosphere), global soils and earth materials (the geosphere), climate and weather (the atmosphere); Provide a greater understanding of some aspects of the physical geography of Ireland; Learn to engage with and critically evaluate ideas and understanding about the natural world around us. Code Module Semester ECTS Examination Arrangements TI258 Rural Environments Sustainability and Management 2 5 Essay; 2 hour examination Alongside the decline in traditional activities there is equally a growth in terms of new demands being placed on rural environments, demands for quality food production, public amenity space, conservation and environmental protection. This course explores these new demands and the ‘value’ placed on rural landscapes; changing perceptions and awareness and contemporary challenges. The course uses international and national examples to explore issues of management, conservation and sustainability. 59 Technology for the Protection & Mitigation of Natural Disasters Code Course Semester ECTS Examination Arrangements EOS320 Applied and Environmental Geophysics 2 5 Two hour examination This module will introduce students to a series of geophysical remote sensing techniques for exploring the near-surface of Earth. The results will be used to explain key chemical, geological, hydro geological and physical processes beneath the surface and how these can aid the monitoring of geo-hazards and management of near-surface resources. 60