Metabolomics analysis of muscle from piglets fed low protein diets supplemented with branched chain amino acids using HPLC-high resolution MS Xian Wang1*, Hongkui Wei2*, Jingjing Cao3, Zhen Li3, Pingli He1** 1State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, P. R. China 2 Department of Animal Nutrition and Feed Science, College of Animal Science and Technology, Huazhong Agricultural University, Wuhan 430070, P. R. China 3State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, 100193, P. R. China *Xian Wang and Hongkui Wei contributed equally to this work **Corresponding author. State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China E-mail address: hepingli@cau.edu.cn. Tel: + 86-10-62733588; fax: +86-10-62733688. Table S1. Amino acids concentration in muscle of piglets with different diets (nmol/mg) SEM1 Diets NP1 LP2 Methionine 137.53b Threonine P value LP+BCAA LP+2BCAA 117.68b 285.95a 318.36a 25.91 <.0001 260.71b 250.54b 338.18b 472.74a 33.10 0.001 Tryptophan 3051.99 2475.47 2547.51 2739.75 805.64 0.96 Valine 190.39 202.69 206.17 228.42 22.71 0.70 Isoleucine 76.67 99.91 99.17 110.13 11.21 0.23 Leucine 195.80 200.74 247.35 262.21 22.33 0.13 Phenylalanine 76.88 115.32 114.73 123.52 12.77 0.08 Glycine 2809.69 2034.44 2890.34 3133.65 319.42 0.13 Glutamic acid 398.06 383.28 432.61 497.64 48.89 0.38 Ornithine 42.19 68.69 120.20 120.91 21.59 0.05 Arginine 172.47 165.89 213.97 230.39 27.34 0.34 Serine 217.92 206.50 200.85 260.25 19.61 0.17 Phosphoserine 39.80 42.56 40.03 45.12 3.58 0.70 Taurine 2209.14 2194.45 1673.79 2002.92 167.97 0.13 Aspartic acid 281.75 336.57 335.76 387.43 36.55 0.28 γ-Aminobutyric acids 17.12 16.63 17.84 14.89 3.712 0.95 Table S2. Identification and trends of change for differential metabolites in liver of piglets with different diets Name Formula Theoretical Mean measured Delta Retention exact m/z m/z PPM Time (min) MS fragments L-Proline C5H9NO2 116.0706 116.0708 1.55 0.86 70.0659, 116.0708 L-Threonine C4H9NO3 120.0655 120.0656 0.65 0.85 102.0538, 74.0599 L-Pyroglutamic acid C5H7NO3 130.0499 130.0499 0.09 0.84 84.0402, 70.4949 Creatine C4H9N3O2 132.0768 132.0767 0.70 0.85 132.0766, 90.0552 Hypoxanthine C5H4N4O 137.0458 137.0456 1.19 1.18 137.0455, 110.0348 L-Lysine C6H14N2O2 147.1128 147.1127 0.59 0.75 130.0853, 84.0811 L-Citrulline C6H13N3O3 176.1030 176.1028 0.96 0.83 159.0763, 113.0709 Oleic acid C18H34O2 282.2632 282.2635 2.49 6.94 265.2533, 283.2607 Docosahexaenoic acid C22H32O2 329.2475 329.2466 2.90 6.63 175.1485, 219.1370 C17H20N4O6 377.1456 377.1450 1.43 4.11 243.0880, 172.0880 C15H22O2 235.1693 235.1687 2.56 7.87 235.1694, 179.1068 Riboflavin Confertifolin Table S3. Identification and trends of change for differential metabolites in plasma of piglets with different diets Name Formula Theoretical Mean Delta Retention exact m/z measured m/z PPM Time (min) MS fragments Threonine C4H9NO3 120.0655 120.0656 1.03 0.96 120.0653, 102.0545 Leucine C6H13NO2 132.1019 132.1019 0.29 1.37 69.0700, 86.0967 Methionine C5H11NO2S 150.0583 150.0581 1.27 1.18 133.0313, 102.0544 Valine C5H11NO2 118.0863 118.0864 1.38 1.16 72.0815, 118.0863 L-Histidine C6H9N3O2 156.0768 156.0768 0.09 0.93 156.0757, 110.0714 Alanine C3H7NO2 90.0550 90.0555 6.18 0.95 90.0558, 72.0451 γ-Aminobutyric acid C4H9NO2 104.0706 104.0710 3.93 0.96 69.0341, 87.0443 5-Aminolevulinate C5H9NO3 132.0655 132.0660 3.94 0.99 86.0606, 114.0552 N-Methyltyramine C9H13NO 152.1070 152.1069 0.78 1.82 121.0647, 103.0543 Phenylalanine C9H11NO2 166.0863 166.0860 1.36 1.55 120.0806, 103.0545 N-Acetyl-L-lysine C8H16N2O3 189.1234 189.1233 0.41 0.76 189.1224, 143.1172 C6H12N2O4S2 241.0311 241.0307 1.57 0.79 120.0130, 74.0293 Cystine