Electronic supplementary material for: Mathers, K.L. Millett, J. Robertson, A.L. Stubbington, R. and Wood, P.J. Amphipod response to benthic and hyporheic sedimentation varies with direction of vertical hydrological exchange. Freshwater Biology. Table S1. Fisher’s LSD post-hoc comparisons for G.pulex abundance. P-values are presented for pairwise comparisons between the pattern of hydrological exchange for the same section / depth (i.e. vertical position) and sediment treatment. Significant (P<0.05) results are emboldened. Open gravel framework, Section A (0-50mm) Hydrological Downwelling Upwelling exchange No exchange 0.004 <0.001 Downwelling <0.001 Open gravel framework, Section B (50-100mm) Hydrological Downwelling Upwelling exchange No exchange 0.725 0.161 Downwelling 0.080 Open gravel framework, Section C (100-150mm) Hydrological Downwelling Upwelling exchange No exchange 0.815 0.349 Downwelling 0.242 Open gravel framework, Section D (150-200mm) Hydrological Downwelling Upwelling exchange No exchange 0.907 0.558 Downwelling 0.640 Open gravel framework, Section E (200-250mm) Hydrological Downwelling Upwelling exchange No exchange 0.129 <0.001 Downwelling <0.001 3kg m-2 surface sedimentation, Section A (0-50mm) Hydrological Downwelling Upwelling exchange No exchange <0.001 0.725 Downwelling <0.001 3kg m-2 surface sedimentation, Section B (50-100mm) Hydrological Downwelling Upwelling exchange No exchange 0.413 0.002 Downwelling 0.020 3kg m-2 surface sedimentation, Section C (100-150mm) Hydrological Downwelling Upwelling exchange No exchange 0.413 0.242 Downwelling 0.725 3kg m-2 surface sedimentation, Section D (150-200mm) Hydrological Downwelling Upwelling exchange No exchange 0.292 0.907 Downwelling 0.242 3kg m-2 surface sedimentation, Section E (200-250mm) Hydrological Downwelling Upwelling exchange No exchange <0.001 <0.001 Downwelling <0.001 5kg m-2 benthic sedimentation, Section A (0-50mm) Hydrological Downwelling Upwelling exchange No exchange <0.001 0.725 Downwelling 0.036 5kg m-2 benthic sedimentation, Section B (50-100mm) Hydrological Downwelling Upwelling exchange No exchange Downwelling 5kg m-2 benthic sedimentation, Section C (100-150mm) Hydrological Downwelling Upwelling exchange No exchange 0.036 0.129 Downwelling 0.062 5kg m-2 benthic sedimentation, Section D (150-200mm) Hydrological Downwelling Upwelling exchange No exchange 0.349 0.558 Downwelling 0.725 5kg m-2 benthic sedimentation, Section E (200-250mm) Hydrological Downwelling Upwelling exchange No exchange 0.010 <0.001 Downwelling <0.001 3kg m-2 subsurface sedimentation of one section, Section A (0-50mm) Hydrological Downwelling Upwelling exchange No exchange 0.036 0.242 Downwelling 0.001 3kg m-2 subsurface sedimentation of one section, Section B (50-100mm) Hydrological Downwelling Upwelling exchange No exchange <0.001 <0.001 Downwelling 0.010 3kg m-2 subsurface sedimentation of one section, Section C (100-150mm) Hydrological Downwelling Upwelling exchange No exchange 0.014 0.161 Downwelling <0.001 3kg m-2 subsurface sedimentation of one section, Section D (150-200mm) Hydrological Downwelling Upwelling exchange No exchange 0.102 0.198 Downwelling 0.725 3kg m-2 subsurface sedimentation of one section, Section E (200-250mm) Hydrological Downwelling Upwelling exchange No exchange 0.815 <0.001 Downwelling <0.001 3kg m-2 subsurface sedimentation of three sections, Section A (0-50mm) Hydrological Downwelling Upwelling exchange No exchange 0.349 <0.001 Downwelling <0.001 3kg m-2 subsurface sedimentation of three sections, Section B (50-100mm) Hydrological Downwelling Upwelling exchange No exchange 0.198 0.161 Downwelling 0.907 3kg m-2 subsurface sedimentation of three sections, Section C (100-150mm) Hydrological Downwelling Upwelling exchange No exchange 0.815 0.047 Downwelling 0.027 3kg m-2 subsurface sedimentation of three sections, Section D (150-200mm) Hydrological Downwelling Upwelling exchange No exchange 0.349 0.047 Downwelling 0.292 3kg m-2 subsurface sedimentation of three sections, Section E (200-250mm) Hydrological Downwelling Upwelling exchange No exchange 0.815 0.047 Downwelling 0.027 3kg m-2 surface and subsurface sedimentation (all sections), Section A (0-50mm) Hydrological Downwelling Upwelling exchange No exchange <0.001 0.161 Downwelling 0.027 3kg m-2 surface and subsurface sedimentation (all sections), Section B (50-100mm) Hydrological Downwelling Upwelling exchange No exchange 0.047 0.292 Downwelling 0.002 3kg m-2 surface and subsurface sedimentation (all sections), Section C (100-150mm) Hydrological Downwelling Upwelling exchange No exchange 0.198 0.558 Downwelling 0.483 3kg m-2 surface and subsurface sedimentation (all sections), Section D (150-200mm) Hydrological Downwelling Upwelling exchange No exchange 0.815 1.000 Downwelling 0.815 3kg m-2 surface and subsurface sedimentation (all sections), Section E (200-250mm) Hydrological Downwelling Upwelling exchange No exchange 0.907 0.413 Downwelling 0.483 Table S2. Fisher’s LSD post-hoc comparisons for G.pulex abundance under no exchange conditions. P-values are presented for pairwise comparisons between sediment treatments for the same section /depth (i.e. vertical position). Significant (P<0.05) results are emboldened. Sediment treatments; 1=open gravel framework; 2 = 3kg m-2 surface sedimentation; 3 = 5kg m-2 surface sedimentation; 4 = 3kg m-2 subsurface sedimentation of one section; 5 = 3kg m-2 subsurface sedimentation of three sections and; 6= 3kg m-2 surface and subsurface sedimentation (all sections). Section A: 0-50mm Sediment 2 3 treatment 1 <0.001 0.047 2 0.129 3 4 5 Section B: 50-100mm Sediment 2 treatment 1 0.161 2 3 4 5 Section C: 100-150mm Sediment 2 treatment 1 0.3907 2 3 4 5 Section D: 150-200mm Sediment 2 treatment 1 0.640 2 3 4 5 Section E: 200-250mm Sediment 2 treatment 1 0.014 2 3 4 5 4 5 6 0.198 0.027 0.483 <0.001 <0.001 <0.001 <0.001 <0.001 <0.001 <0.001 <0.001 0.10 3 4 5 6 0.002 0.080 <0.001 <0.001 0.020 0.027 0.413 0.349 0.001 0.242 0.815 0.047 <0.001 0.292 3 4 5 6 0.558 0.640 0.815 0.725 0.413 0.640 0.725 0.907 0.483 0.292 0.242 0.102 0.413 0.129 3 4 5 6 0.815 0.815 0.349 0.161 0.242 0.413 0.198 0.292 0.907 0.242 0.102 0.161 0.815 0.725 3 4 5 6 0.640 0.004 0.198 <0.001 0.143 0.004 <0.001 0.014 0.102 0.001 <0.001 0.005 0.047 0.725 Table S3. Fisher’s LSD post-hoc comparisons for G.pulex abundance under downwelling flow conditions. P-values are presented for pairwise comparisons between sediment treatments for the same section / depth (i.e. vertical position). Significant (P<0.05) results are emboldened. Sediment treatments; 1=open gravel framework; 2 = 3kg m-2 surface sedimentation; 3 = 5kg m-2 surface sedimentation; 4 = 3kg m-2 subsurface sedimentation of one section; 5 = 3kg m-2 subsurface sedimentation of three sections and; 6= 3kg m-2 surface and subsurface sedimentation (all sections). Section A: 0-50mm Sediment 2 treatment 1 0.001 2 3 4 5 Section B: 50-100mm Sediment 2 treatment 1 0.815 2 3 4 5 Section C: 100-150mm Sediment 2 treatment 1 0.349 2 3 4 5 Section D: 150-200mm Sediment 2 treatment 1 0.483 2 3 4 5 Section E200-250mm Sediment 2 treatment 1 0.292 2 3 4 5 3 4 5 6 0.007 0.483 0.036 <0.001 <0.001 0.815 <0.001 0.004 0.062 0.725 <0.001 0.002 0.080 0.907 3 4 5 6 0.483 0.640 0.349 0.483 0.815 0.558 0.725 0.907 0.725 0.005 0.010 0.036 0.062 0.027 3 4 5 6 1.000 0.349 0.047 0.004 0.047 0.242 0.036 0.242 0.413 1.000 0.349 1.000 0.047 0.242 3 4 5 6 0.413 0.907 0.558 0.198 0.161 1.000 0.483 0.413 0.558 0.292 0.725 0.815 0.102 0.292 3 4 5 6 0.29 0.640 1.000 0.292 0.129 0.102 0.558 0.907 0.102 0.102 0.558 0.907 0.102 1.000 Table S4. Fisher’s LSD post-hoc comparisons for abundance under upwelling flow conditions. Pvalues are presented for pairwise comparisons between sediment treatments for the same section / depths (i.e. vertical position). Significant (P<0.05) results are emboldened. Sediment treatments; 1=open gravel framework; 2 = 3kg m-2 surface sedimentation; 3 = = 5kg m-2 surface sedimentation; 4 = 3kg m-2 subsurface sedimentation of one section; 5 = 3kg m-2 subsurface sedimentation of three sections and; 6= 3kg m-2 surface and subsurface sedimentation (all sections). Section A: 0-50mm Sediment 2 treatment 1 0.907 2 3 4 5 Section B: 50-100mm Sediment 2 treatment 1 0.725 2 3 4 5 Section C: 100-150mm Sediment 2 treatment 1 0.907 2 3 4 5 Section D: 150-200mm Sediment 2 treatment 1 1.000 2 3 4 5 Section E: 200-250mm Sediment 2 treatment 1 0.640 2 3 4 5 3 4 5 6 0.161 0.129 0.198 0.161 0.907 0.010 0.007 0.242 0.198 <0.001 <0.001 <0.001 <0.001 <0.001 3 4 5 6 0.349 0.198 0.907 0.640 0.413 0.027 0.010 0.198 0.036 0.129 0.062 0.558 0.161 0.483 3 4 5 6 0.725 0.815 0.483 0.558 0.725 0.014 0.010 0.005 0.002 0.640 0.558 0.413 0.242 0.047 3 4 5 6 0.349 0.349 0.815 0.815 0.483 0.558 0.558 0.129 0.413 0.080 0.080 0.413 0.129 0.020 3 4 5 6 0.198 0.080 0.102 0.036 0.725 <0.001 <0.001 <0.001 <0.001 <0.001 <0.001 <0.001 <0.001 0.129