Supporting Information Assessing species vulnerability to climate and land use change: the case of the Swiss breeding birds Ramona Maggini1,2,*, Anthony Lehmann2,3, Niklaus Zbinden1, Niklaus E. Zimmermann4, Janine Bolliger4, Boris Schröder5,6, Ruud Foppen7, Hans Schmid1, Martin Beniston2 and Lukas Jenni1 1 Swiss Ornithological Institute, CH-6204 Sempach, Switzerland Institute for Environmental Sciences, University of Geneva, Battelle D, CH-1227 Carouge, Switzerland 3 Forel Institute, University of Geneva, CH-1290 Versoix, Switzerland 4 Swiss Federal Research Institute WSL, CH-8903 Birmensdorf, Switzerland 5 Environmental Systems Analysis, Technical University of Braunschweig, D-38106 Braunschweig, Germany 6 Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), D-14195 Berlin, Germany 7 European Bird Census Council, NL-6503 GA Nijmegen, The Netherlands * Correspondence: Ramona Maggini, Australian Research Council Centre of Excellence for Environmental Decisions (CEED), School of Biological Sciences, Goddard Building 8, The University of Queensland, St Lucia, Brisbane, QLD 4072, Australia. Email: r.maggini@uq.edu.au 2 Appendix S1 Species distribution modelling and projection into the future The current distribution within Switzerland of common and semi-rare breeding bird species was modelled using three modelling techniques: generalized additive models (GAMs; Hastie & Tibshirani, 1990), boosted regression trees (BRTs; Elith et al., 2008) and multivariate adaptive regression splines (MARS; Elith & Leathwick, 2007). We used presence-absence data within 1km2 of different in-house databases: records from the second Swiss Breeding Bird Atlas 1993-1996 (Schmid et al., 1998), the monitoring program for common breeding birds (MHB; data recorded between 1999-2008; Schmid et al., 2004) and observations from the monitoring program for rare breeding and visiting birds (SI; data recorded over the period 1993-2008; Zbinden & Schmid, 1995). The database of the Swiss Breeding Bird Atlas 1993-1996 provides presence-absence data for all breeding birds within 2,712 sampling units of 1km2 across the Swiss territory (approximately 41,301 km2). These are complemented with 267 sampling units of 1km2 from the monitoring program for common breeding birds. The survey is conducted on an annual basis and each square is surveyed three times – twice above the treeline – per breeding season by skilled volunteers who map all birds observed or heard along a square-specific route. Finally, the Information Service is the database of the monitoring for rare breeding and visiting birds and gather selected chance observations from volunteer birdwatchers. These observations data are also stored at a 1 km resolution. The distribution of rare, nocturnal or particularly cryptic species that do not have reliable absence data was modelled using Maxent, a presence-only technique based on maximum entropy (Phillips et al., 2006). -1- Models goodness of fit was assessed using the area under the curve (AUC) of a receiver operating characteristic plot (ROC, Fielding & Bell, 1997). Model stability was evaluated by performing a 10-fold cross-validation. Sample sizes, model goodness of fit (AUC) and AUC values for cross-validation (cvAUC) for each species are presented in Table S1. Only species for which model fit was judged reasonably good and for which the maps of potential distribution passed the test of a panel of experts were retained for the calculation of the index. The panel of experts was composed by seven colleagues of the monitoring program of the Swiss Ornithological Institute who have extensive knowledge of the distribution of the different species within Switzerland, namely Dr Niklaus Zbinden, Dr Verena Keller, Hans Schmid, Peter Knaus, Dr Martin Spiess, Dr Bernard Volet and Dr Marc Kéry. Species that were discarded from the analysis are the Mew Gull (Larus canus), White-spotted Bluethroat (Luscinia svecica cyanecula), Pallid Swift (Apus pallidus) and Grey Partridge (Perdix perdix). These are rare species characterized by very localized distributions within Switzerland and distributional data that do not allow proper modelling. For other 19 species the expert panel judged that the modelled distribution was overall correct but too optimistic, i.e. showing the potential rather than the actual distribution. This is inherent to the modelling and estimations of the area of occupancy can’t be replaced with actual observations since we need to produce projections for the future. As a consequence, however, the indicators related to the current and future area of occupancy can be impacted and the final vulnerability index slightly underestimated. These species have been highlighted in the table with the vulnerability indices (symbol * in Table S3, Appendix S3, of the Supporting Information). The distribution of the species was modelled as a function of environmental variables that are thought to limit their current range, i.e. bioclimatic, topographic and land use related predictors prepared at a 1 km2 resolution to match the resolution of species data. Collinearity among predictors was tested in the preliminary phase of the study and only predictors correlated at less than 0.7 were considered. Bioclimatic predictors finally retained for the modelling were: annual degree-days calculated with a threshold of 5.56 °C, i.e. the sum of daily mean temperatures above 5.56 °C over a year; mean moisture index over the breeding season (April - June); potential direct solar radiation in March. The amount of solar radiation in March is important for breeding birds in Switzerland because in sunny locations snow will melt more rapidly thus allowing the breeding season to start earlier and to eventually count on a second brood. The moisture index is defined as the difference between precipitation and evapotranspiration and in our case it informs on how wet the breeding season is expected to be, which is correlated to the survival rate of the chicks and an indicator of the reproductive success. Land use predictors were calculated as the percentage of six main land use categories (closed canopy forest; open canopy forest; overgrown areas; non intensively used open land; intensively used open land; glaciers, rocks, sands and scree) within a square kilometre. These are the categories used for projecting future land use (Bolliger et al., 2007), supplemented with the category of glaciers-rocks-sands-scree. The latter was used to fill up the area above the timberline in the scenario maps and was considered as constant through time. As a consequence the estimation of the area of occupancy of alpine species in the future is probably overestimated (i.e. only accounts for climate change impacts and not for the probable change in habitat) and final vulnerability underestimated. Topographic predictors describing the landscape were also defined at the 1 km2 resolution: percentage of landform categories (canyons, U-shaped valleys, plains, open slopes, upper slopes, mountain tops), total length of lake shore, total river length, marshy and reed bed surfaces within a square kilometre. -2- The distributions of the species were projected for the 21st century according to two combined scenarios of climate and land use change. Regionalized (according to the methodology described in Engler et al., 2011) IPCC climatic scenarios A1FI and B2 were combined with land use scenarios specifically developed for Switzerland, ‘liberalization’ (LIB) and ‘lowered agricultural production (strong)’ (LAP) (Bolliger et al., 2007), respectively. Under both climatic scenarios, annual degree-days will significantly increase through time (median values for Switzerland, present: 10,669, B2-2050: 14,977, B2-2100: 18,432; A1-2050: 15,906; A1-2100: 26,009 [day*deg]), while the mean moisture index over the breeding season will decrease and even become negative under the extreme scenario indicating that evapotranspiration will exceed precipitation leading to a deficit of water (median values for Switzerland, present: 426, B2-2050: 279, B2-2100: 137; A1-2050: 182; A1-2100: -246 [1/10 mm]). Land use scenarios rely on two drivers of land use change: the societal role of agricultural production and the public support for conservation issues (Bolliger et al., 2007) and were spatially implemented using the Swiss land use statistics 1979/85 and 1990/1992 (Office fédéral de la statistique, 2003). The ‘liberalization’ scenario (LIB) builds on the IPPC A1 scenario and assumes that the agricultural markets are no longer subsidized with product payments or direct payments bound to agri-environmental schemes. As a consequence, farming in the mountains is largely abandoned. This in turn favours spontaneous reforestation. The ‘lowered agricultural production’ scenario (LAP) builds on the IPPC scenario B2 and assumes large-scale adoption of agri-environmental schemes which foster sustainable land use (details see Bolliger et al., 2007, 2008; Lütolf et al., 2009; Steck et al., 2007). Projections for the 21st century were performed for two time frames: 2050 and 2100. The mean probability of occurrence was chosen as consensus method to summarize the ensemble of predicted probabilities for a given common species, scenario of change and time frame (Marmion et al., 2009). The mean probability of occurrence was then transformed into presence-absence according to a threshold allowing at least 95% of the presence records used for the modelling to be correctly reclassified as presence (Lehmann et al., 2002). The same type of threshold was used to transform the probabilities obtained with Maxent for rare species. From these presence-absence maps, the area of occupancy (AO) of the species within Switzerland was finally derived by counting the number of occupied 1-km2 squares. All the modelling and subsequent analyses were performed using the statistical package R (v. 2.7.0, R Development Core Team, 2008). Table S1 Species sample size (N) and model predictive performance according to the area under the receiver operating characteristic curve (AUC) and a cross-validated AUC. Latin Name Accipiter gentilis Accipiter nisus Acrocephalus arundinaceus Acrocephalus palustris Acrocephalus scirpaceus Actitis hypoleucos Aegithalos caudatus Aegolius funereus Alauda arvensis Alcedo atthis Alectoris graeca Anas platyrhynchos Anas strepera Anthus pratensis Northern Goshawk Eurasian Sparrowhawk Great Reed Warbler GAM AUC cvAUC 0.674 0.661 0.654 0.643 0.962 0.947 MARS AUC cvAUC 0.668 0.661 0.647 0.641 0.961 0.955 AUC 0.771 0.759 0.992 BRT cvAUC 0.674 0.654 0.957 Marsh Warbler Eurasian Reed Warbler 0.923 0.967 0.904 0.953 0.918 0.960 0.908 0.958 0.970 0.989 0.906 0.962 330 317 Common Sandpiper Long-tailed Bushtit Boreal Owl Eurasian Skylark Common Kingfisher Rock Partridge Mallard Gadwall Meadow Pipit 0.944 0.820 0.921 0.810 0.944 0.822 0.904 0.812 0.988 0.862 0.921 0.808 0.855 0.950 0.902 0.942 0.971 0.908 0.848 0.935 0.897 0.925 0.954 0.902 0.856 0.961 0.901 0.956 0.951 0.906 0.845 0.948 0.895 0.945 0.916 0.898 0.941 0.988 0.950 0.980 0.998 0.961 0.861 0.955 0.908 0.950 0.932 0.904 123 812 905 1117 881 716 807 17 296 English Name MAXENT AUC cvAUC 910 2148 280 0.917 -3- N 0.897 Latin Name Anthus spinoletta Anthus trivialis Apus apus Apus melba Aquila chrysaetos Ardea cinerea Asio otus Athene noctua Aythya ferina Aythya fuligula Bonasa bonasia Bubo bubo Buteo buteo Caprimulgus europaeus Carduelis cabaret Carduelis cannabina Carduelis carduelis Carduelis chloris Carduelis spinus Carpodacus erythrinus Certhia brachydactyla Certhia familiaris Charadrius dubius Ciconia ciconia Cinclus cinclus Coccothraustes coccothraustes Columba oenas Columba palumbus Corvus corax Corvus corone corone Corvus frugilegus Corvus monedula Coturnix coturnix Crex crex Cuculus canorus Delichon urbicum Dendrocopos major Dendrocopos medius Dendrocopos minor Dryocopus martius Emberiza calandra Emberiza cia Emberiza cirlus Emberiza citrinella Emberiza hortulana Emberiza schoeniclus Erithacus rubecula Falco peregrinus Falco subbuteo Falco tinnunculus Ficedula hypoleuca Fringilla coelebs Fulica atra Gallinago gallinago Gallinula chloropus Garrulus glandarius Glaucidium passerinum Hippolais icterina Hippolais polyglotta Hirundo rustica Ixobrychus minutus Jynx torquilla Lagopus muta Lanius collurio Lanius senator English Name Water Pipit Tree Pipit Common Swift Alpine Swift Golden Eagle Grey Heron Long-eared Owl Little Owl Common Pochard Tufted Duck Hazel Grouse Eurasian Eagle-Owl Common Buzzard European Nightjar GAM AUC cvAUC 0.983 0.980 0.914 0.908 0.836 0.824 0.893 0.850 0.871 0.845 0.871 0.850 MARS AUC cvAUC 0.985 0.983 0.917 0.910 0.838 0.823 0.892 0.849 0.860 0.829 0.870 0.836 AUC 0.994 0.959 0.887 0.974 0.947 0.943 BRT cvAUC 0.984 0.915 0.829 0.849 0.853 0.868 0.974 0.945 0.880 0.900 0.918 0.862 0.973 0.941 0.894 0.859 0.912 0.873 1.000 0.992 0.946 0.949 0.922 0.880 0.873 0.866 0.880 0.870 0.915 0.876 MAXENT AUC cvAUC 0.831 0.973 0.805 0.961 0.874 0.785 0.981 0.894 N 839 1212 810 152 336 576 1186 122 16 156 957 269 1825 73 Lesser Redpoll Common Linnet European Goldfinch European Greenfinch Eurasian Siskin Common Rosefinch 0.936 0.762 0.864 0.895 0.861 0.920 0.930 0.743 0.858 0.888 0.848 0.868 0.937 0.767 0.870 0.917 0.858 0.914 0.923 0.742 0.858 0.909 0.838 0.877 0.956 0.844 0.897 0.936 0.907 0.973 0.929 0.760 0.862 0.912 0.847 0.887 565 1030 1847 1916 452 155 Short-toed Treecreeper Eurasian Treecreeper Little Ringed Plover White Stork White-throated Dipper Hawfinch 0.916 0.840 0.931 0.978 0.829 0.807 0.911 0.835 0.918 0.966 0.815 0.798 0.914 0.844 0.931 0.974 0.825 0.799 0.908 0.835 0.912 0.959 0.809 0.785 0.949 0.871 0.979 0.999 0.870 0.847 0.918 0.837 0.925 0.960 0.819 0.792 1261 1330 306 103 553 586 Stock Dove Common Wood Pigeon Northern Raven Carrion Crow Rook Western Jackdaw Common Quail Corn Crake Common Cuckoo Common House Martin Great Spotted Woodpecker Middle Spotted Woodpecker Lesser Spotted Woodpecker Black Woodpecker Corn Bunting Rock Bunting Cirl Bunting Yellowhammer Ortolan Bunting Common Reed Bunting European Robin Peregrine Falcon Eurasian Hobby Common Kestrel European Pied Flycatcher Common Chaffinch Eurasian Coot Common Snipe Common Moorhen Eurasian Jay Eurasian Pygmy Owl 0.852 0.910 0.741 0.883 0.964 0.906 0.855 0.892 0.757 0.857 0.869 0.846 0.905 0.723 0.874 0.947 0.893 0.850 0.871 0.744 0.849 0.860 0.840 0.918 0.745 0.914 0.956 0.906 0.853 0.882 0.768 0.854 0.886 0.839 0.911 0.719 0.904 0.939 0.884 0.845 0.845 0.756 0.846 0.879 0.931 0.943 0.826 0.949 0.990 0.950 0.911 0.966 0.858 0.911 0.914 0.863 0.916 0.725 0.911 0.950 0.890 0.858 0.869 0.772 0.856 0.880 940 1792 759 2224 231 320 1119 250 1649 1021 2170 0.913 0.902 0.907 0.893 0.964 0.911 309 0.862 0.855 0.856 0.847 0.898 0.859 1027 0.826 0.946 0.941 0.878 0.901 0.904 0.976 0.890 0.847 0.864 0.698 0.836 0.822 0.935 0.933 0.870 0.895 0.868 0.964 0.883 0.823 0.860 0.681 0.822 0.830 0.942 0.940 0.871 0.899 0.911 0.964 0.952 0.847 0.861 0.698 0.842 0.821 0.938 0.925 0.866 0.891 0.856 0.956 0.945 0.810 0.855 0.671 0.824 0.872 0.975 0.973 0.957 0.948 0.998 0.995 0.970 0.938 0.907 0.752 0.916 0.824 0.944 0.935 0.891 0.899 0.902 0.970 0.950 0.835 0.862 0.687 0.848 960 351 277 606 1390 89 209 2662 725 1461 1092 737 0.967 0.985 0.999 0.948 0.894 0.958 0.979 0.697 0.936 0.886 0.991 0.989 0.956 0.919 0.984 0.982 0.945 0.912 0.994 0.999 1.000 0.986 0.938 0.989 0.984 0.998 0.955 0.918 2915 337 5 799 2223 527 Icterine Warbler Melodious Warbler Barn Swallow Little Bittern Eurasian Wryneck Rock Ptarmigan Red-backed Shrike Woodchat Shrike 0.890 0.923 0.923 0.967 0.840 0.955 0.834 0.970 0.924 0.873 0.918 0.919 0.952 0.833 0.952 0.824 0.922 -4- 0.890 0.928 0.929 0.963 0.841 0.950 0.834 0.954 0.873 0.917 0.926 0.949 0.831 0.946 0.824 0.905 0.967 0.962 0.946 0.990 0.912 0.969 0.888 0.988 0.898 0.935 0.926 0.955 0.850 0.953 0.823 0.917 0.899 229 336 1511 226 1175 755 959 62 Latin Name Larus michahellis Larus ridibundus Locustella luscinioides Locustella naevia Loxia curvirostra Lullula arborea Luscinia megarhynchos Luscinia svecica svecica Mergus merganser Merops apiaster Milvus migrans Milvus milvus Monticola saxatilis Monticola solitarius Montifringilla nivalis Motacilla alba Motacilla cinerea Motacilla flava Muscicapa striata Netta rufina Nucifraga caryocatactes Numenius arquata Oenanthe oenanthe Oriolus oriolus Otus scops Panurus biarmicus Parus ater Parus caeruleus Parus cristatus Parus major Parus montanus Parus palustris Passer domesticus Passer montanus Pernis apivorus Phoenicurus ochruros Phoenicurus phoenicurus Phylloscopus bonelli Phylloscopus collybita Phylloscopus sibilatrix Phylloscopus trochilus Pica pica Picoides tridactylus Picus canus Picus viridis Podiceps cristatus Podiceps nigricollis Porzana porzana Prunella collaris Prunella modularis Ptyonoprogne rupestris Pyrrhocorax graculus Pyrrhocorax pyrrhocorax Pyrrhula pyrrhula Rallus aquaticus Regulus ignicapilla Regulus regulus GAM AUC cvAUC 0.987 0.957 0.988 0.920 MARS AUC cvAUC 0.980 0.974 0.969 0.933 AUC 0.997 0.996 BRT cvAUC 0.974 0.952 0.975 0.931 0.967 0.916 0.972 0.926 0.962 0.907 0.995 0.973 0.971 0.922 147 291 0.839 0.888 0.936 0.831 0.873 0.934 0.838 0.897 0.927 0.830 0.879 0.926 0.891 0.971 0.964 0.837 0.899 0.940 896 280 1044 Red-spotted Bluethroat 0.979 0.852 0.979 0.893 0.999 0.919 19 Common Merganser European Bee-eater Black Kite Red Kite Rufous-tailed Rock Thrush Blue Rock-Thrush White-winged Snowfinch White Wagtail Grey Wagtail Western Yellow Wagtail Spotted Flycatcher Red-crested Pochard Spotted Nutcracker 0.952 0.969 0.872 0.857 0.915 0.941 0.919 0.863 0.843 0.908 0.963 0.942 0.871 0.847 0.908 0.956 0.842 0.861 0.837 0.904 0.990 0.996 0.914 0.914 0.945 0.961 0.871 0.866 0.843 0.911 498 21 766 535 620 0.991 0.965 0.959 0.962 0.988 0.966 0.966 0.965 0.998 0.973 0.971 0.963 53 769 0.849 0.817 0.915 0.834 0.808 0.904 0.897 0.816 0.943 0.890 0.803 0.933 0.929 0.853 0.981 0.897 0.806 0.947 2433 1158 113 0.835 0.981 0.920 0.829 0.957 0.917 0.836 0.977 0.922 0.828 0.957 0.915 0.880 0.999 0.946 0.836 0.970 0.917 1584 139 806 Eurasian Curlew Northern Wheatear Eurasian Golden Oriole Eurasian Scops Owl Bearded Reedling Coal Tit Blue Tit European Crested Tit Great Tit Willow Tit Marsh Tit House Sparrow Eurasian Tree Sparrow European Honey Buzzard Black Redstart Common Redstart 1.000 0.976 0.919 0.590 0.972 0.917 0.999 0.976 0.920 0.635 0.970 0.917 1.000 0.988 0.953 0.997 0.974 0.928 0.991 0.887 0.938 0.865 0.955 0.910 0.883 0.950 0.944 0.742 0.934 0.879 0.934 0.860 0.949 0.904 0.878 0.945 0.938 0.733 0.977 0.928 0.958 0.869 0.976 0.913 0.887 0.962 0.944 0.738 0.955 0.923 0.951 0.861 0.971 0.908 0.876 0.958 0.942 0.728 1.000 0.961 0.971 0.923 0.986 0.945 0.908 0.978 0.971 0.812 0.988 0.932 0.957 0.869 0.974 0.910 0.882 0.958 0.945 0.746 6 562 1230 92 45 2477 1928 1568 2401 1037 1558 1655 1107 1279 0.584 0.772 0.540 0.759 0.805 0.771 0.757 0.750 0.913 0.891 0.803 0.764 2907 829 Western Bonelli's Warbler Common Chiffchaff Wood Warbler Willow Warbler Eurasian Magpie Eurasian Three-toed Woodpecker Grey-headed Woodpecker European Green Woodpecker Great Crested Grebe Black-necked Grebe Spotted Crake Alpine Accentor Dunnock Eurasian Crag Martin 0.853 0.839 0.849 0.835 0.904 0.840 631 0.839 0.839 0.841 0.866 0.904 0.824 0.829 0.830 0.856 0.896 0.920 0.831 0.860 0.866 0.913 0.908 0.817 0.834 0.855 0.901 0.959 0.872 0.906 0.898 0.960 0.923 0.829 0.842 0.858 0.906 2613 735 1056 1165 303 0.866 0.860 0.868 0.864 0.944 0.879 637 0.789 0.781 0.788 0.778 0.866 0.789 1426 0.968 0.973 0.959 0.867 0.972 0.960 0.959 0.855 0.996 0.997 0.967 0.925 0.980 0.833 0.860 0.975 0.823 0.855 0.977 0.849 0.850 0.973 0.835 0.847 0.992 0.898 0.922 0.976 0.849 0.863 166 20 33 384 2040 1510 Alpine Chough Red-billed Chough 0.957 0.937 0.947 0.916 0.954 0.928 0.947 0.895 0.973 0.986 0.950 0.908 311 195 Eurasian Bullfinch Water Rail Firecrest Goldcrest 0.873 0.961 0.860 0.870 0.868 0.951 0.852 0.862 0.876 0.965 0.867 0.878 0.869 0.955 0.861 0.868 0.908 0.982 0.942 0.928 0.872 0.953 0.879 0.880 1506 363 1955 1987 English Name Yellow-legged Gull Common black-headed Gull Savi's Warbler Common Grasshopper Warbler Red Crossbill Woodlark Common Nightingale MAXENT AUC cvAUC 80 25 0.981 0.961 -5- N 0.951 0.904 Latin Name Riparia riparia Saxicola rubetra Saxicola torquatus Scolopax rusticola Serinus citrinella Serinus serinus Sitta europaea Sterna hirundo Streptopelia decaocto Streptopelia turtur Strix aluco Sturnus vulgaris Sylvia atricapilla Sylvia borin Sylvia communis Sylvia curruca Sylvia nisoria Tachybaptus ruficollis Tetrao tetrix Tetrao urogallus Tichodroma muraria Troglodytes troglodytes Turdus merula Turdus philomelos Turdus pilaris Turdus torquatus Turdus viscivorus Tyto alba Upupa epops Vanellus vanellus English Name Sand Martin Whinchat Eurasian Stonechat Eurasian Woodcock Citril Finch European Serin Eurasian Nuthatch Common Tern Eurasian Collared Dove European Turtle Dove Tawny Owl Common Starling Eurasian Blackcap Garden Warbler Common Whitethroat Lesser Whitethroat Barred Warbler Little Grebe Black Grouse Western Capercaillie Wallcreeper Winter Wren Common Blackbird Song Thrush Fieldfare Ring Ouzel Mistle Thrush Barn Owl Eurasian Hoopoe Northern Lapwing GAM AUC cvAUC 0.935 0.924 0.892 0.884 0.885 0.877 MARS AUC cvAUC 0.933 0.910 0.893 0.878 0.877 0.870 AUC 0.972 0.940 0.951 BRT cvAUC 0.921 0.895 0.901 0.935 0.849 0.900 0.977 0.900 0.903 0.929 0.840 0.893 0.969 0.888 0.898 0.934 0.848 0.920 0.978 0.898 0.905 0.928 0.838 0.912 0.946 0.885 0.900 0.965 0.900 0.954 0.996 0.940 0.945 0.934 0.845 0.918 0.963 0.887 0.909 0.955 0.938 0.796 0.850 0.888 0.999 0.931 0.928 0.928 0.883 0.834 0.949 0.928 0.785 0.841 0.879 0.851 0.919 0.925 0.902 0.870 0.830 0.971 0.968 0.797 0.841 0.892 0.991 0.947 0.927 0.927 0.884 0.912 0.967 0.961 0.779 0.834 0.880 0.899 0.935 0.924 0.907 0.868 0.907 0.980 0.982 0.854 0.891 0.909 0.999 0.978 0.945 0.971 0.912 0.970 0.968 0.968 0.795 0.853 0.883 0.876 0.940 0.927 0.911 0.871 0.950 0.948 0.887 0.825 0.962 0.875 0.940 0.882 0.817 0.958 0.866 0.973 0.927 0.825 0.965 0.893 0.969 0.915 0.813 0.960 0.885 0.989 0.965 0.874 0.981 0.935 0.976 0.928 0.821 0.964 0.890 0.940 0.975 0.931 0.965 0.950 0.977 0.934 0.967 0.984 0.997 0.942 0.972 MAXENT AUC cvAUC 0.914 0.897 0.798 0.777 0.924 0.912 N 267 520 657 355 581 1341 2108 25 420 639 1868 1709 2567 1863 740 596 15 706 1331 389 439 2739 2642 2376 1823 956 2068 765 429 329 REFERENCES Bolliger J., Hagedorn, F., Leifeld, J., Böhl, J., Zimmermann, S., Soliva, R. & Kienast, F. (2008) Potential carbon-pool changes under various scenarios of land-use change in a mountainous region (Switzerland). Ecosystems, 11, 895-907. Bolliger, J., Kienast, F., Soliva, R. & Rutherford, G. (2007) Spatial sensitivity of species habitat patterns to scenarios of land use change (Switzerland). Landscape Ecology, 22, 773-789. Elith, J. & Leathwick, J. (2007) Predicting species distributions from museum and herbarium records using multiresponse models fitted with multivariate adaptive regression splines. Diversity and Distributions, 13, 265-275. Elith, J., Leathwick, J.R. & Hastie, T. (2008) A working guide to boosted regression trees. Journal of Animal Ecology, 77, 802-813. Engler, R., Randin, C., Thuiller, W., Dullinger, S., Zimmermann, N.E., Araújo, M.B., Pearman, P.B., Albert, C.H., Choler, P., de Lamo, X., Dirnböck, T., Gómez-García, D., Grytnes, J.-A., Heegard, E., Høistad, F., Le Lay, G., Nogués-Bravo, D., Normand, S., Piédalu, C., Puşcaş, M., Sebastià, M.-T., Stanisci, A., Theurillat, J.-P., Trivedi, M., Vittoz, P. & Guisan, A. (2011) Climate change impacts on European mountain plant diversity. Global Change Biology, 17, 2330-2341. Fielding, A.H. & Bell, J.F. (1997) A review of methods for the assessment of prediction errors in conservation presence/absence models. Environmental Conservation, 24, 38–49. Hastie, T. & Tibshirani, R.J. (1990) Generalized Additive Models. Chapman and Hall, London. Lehmann, A., Overton, J.M. & Leathwick, J.R. (2002) GRASP: generalized regression analysis and spatial prediction. Ecological Modelling, 157,189-207. -6- Lütolf, M., Bolliger, J., Kienast, F. & Guisan, A. (2009) Scenario-based assessment of future land-use change on butterfly species distributions. Biodiversity and Conservation, 18, 1329-1347. Marmion, M., Parviainen, M., Luoto, M., Heikkinen, R.K. & Thuiller, W. (2009) Evaluation of consensus methods in predictive species distribution modelling. Diversity and Distributions, 15, 59-69. Office fédéral de la statistique (OFS) (2003) GEOSTAT: Manuel de l'utilisateur. Office Fédéral de la Statistique, Berne, Switzerland. Phillips, S.J., Anderson, R.P. & Schapire, R.E. (2006) Maximum entropy modeling of species geographic distributions. Ecological Modelling, 190, 231-259. Schmid, H., Luder, B., Naef-Daenzer, B., Graf, R. & Zbinden, N. (1998) Schweizer Brutvogelatlas. Verbreitung der Brutvögel in der Schweiz und im Fürstentum Liechtenstein 1993-1996. Schweizerische Vogelwarte, Sempach, Switzerland. Schmid, H., Zbinden, N. & Keller, V. (2004) Überwachung der Bestandsentwicklung häufiger Brutvögel in der Schweiz. Schweizerische Vogelwarte, Sempach, Switzerland. Steck, C.E., Bürgi, M., Bolliger, J., Kienast, F., Lehmann, A. & Gonsetz, Y. (2007) Conservation of grasshopper diversity in a changing environment. Biological Conservation, 138, 360-370. Zbinden, N. & Schmid, H. (1995) Das Programm der Schweizerischen Vogelwarte zur Überwachung der Avifauna gestern und heute. Der Ornithologische Beobachter, 92, 39-58. -7- Appendix S2 Figure S2 The European reservoir was defined as the 72 grid cells (mostly squares of 50×50 km) of the Atlas of European breeding birds (Hagemeijer & Blair, 1997) surrounding Switzerland (approximately a 100 km-buffer around the Swiss territory). REFERENCES Hagemeijer, E.J.M. & Blair, M.J. (1997) The EBCC Atlas of European Breeding Birds: their distribution and abundance. T & A.D. Poyser, London. -8- Appendix S3 Table S3 Vulnerability indices for all regular breeding bird species of Switzerland under the two combined scenarios of climate and land use change, A1FI×LIB (extreme) and B2×LAP (moderate), and for the two time frames 2050 and 2100 (denoted VIa1.50, VIa1.00, VIb2.50 and VIb2.00). The reference vulnerability index (VIref) referring to the initial level of vulnerability is also given. It is calculated on the basis of the present-time values of the indicators IReCH, IReEU and ITrend and by assuming AO´=AO (as a consequence IAO was set to 0.5 and IOverlap to 0). Symbol * indicates species with a vulnerability index that is potentially slightly underestimated since the modelled distribution for these species was too optimistic according to the evaluation of an expert panel (see Appendix S1). Latin Name English Name VI ref VI b2.50 VI b2.00 VI a1.50 VI a1.00 Accipiter gentilis Northern Goshawk 0.281 0.282 0.282 0.263 0.255 Accipiter nisus Eurasian Sparrowhawk 0.254 0.255 0.258 0.247 0.247 Acrocephalus arundinaceus Great Reed Warbler 0.393 0.336 0.317 0.332 0.293 Acrocephalus palustris Marsh Warbler 0.329 0.467 0.536 0.374 0.576 Acrocephalus scirpaceus Eurasian Reed Warbler 0.339 0.343 0.357 0.334 0.345 Actitis hypoleucos Common Sandpiper 0.365 0.371 0.362 0.363 0.305 Aegithalos caudatus Long-tailed Bushtit 0.224 0.202 0.200 0.187 0.176 Aegolius funereus Boreal Owl 0.376 0.492 0.627 0.507 0.717 Alauda arvensis Eurasian Skylark 0.299 0.443 0.412 0.406 0.357 Alcedo atthis Common Kingfisher 0.339 0.320 0.315 0.300 0.259 Alectoris graeca Rock Partridge 0.422 0.421 0.439 0.471 0.558 Anas platyrhynchos Mallard 0.300 0.337 0.331 0.301 0.294 *Anas strepera Gadwall 0.448 0.616 0.601 0.556 0.521 Anthus pratensis Meadow Pipit 0.411 0.487 0.551 0.648 0.722 Anthus spinoletta Water Pipit 0.360 0.418 0.486 0.495 0.662 Anthus trivialis Tree Pipit 0.309 0.323 0.364 0.378 0.511 Apus apus Common Swift 0.269 0.344 0.339 0.286 0.291 Apus melba Alpine Swift 0.355 0.237 0.212 0.290 0.265 Aquila chrysaetos Golden Eagle 0.379 0.409 0.433 0.415 0.521 Ardea cinerea Grey Heron 0.355 0.370 0.363 0.354 0.334 Asio otus Long-eared Owl 0.283 0.340 0.352 0.343 0.321 Athene noctua Little Owl 0.351 0.313 0.274 0.281 0.239 *Aythya ferina Common Pochard 0.492 0.656 0.688 0.643 0.676 Aythya fuligula Tufted Duck 0.415 0.464 0.521 0.471 0.580 Bonasa bonasia Hazel Grouse 0.336 0.461 0.586 0.412 0.683 Bubo bubo Eurasian Eagle-Owl 0.364 0.481 0.453 0.341 0.288 Buteo buteo Common Buzzard 0.255 0.303 0.350 0.276 0.406 Caprimulgus europaeus European Nightjar 0.416 0.289 0.253 0.323 0.219 Carduelis cabaret Lesser Redpoll 0.359 0.429 0.497 0.445 0.665 Carduelis cannabina Common Linnet 0.273 0.294 0.308 0.342 0.356 Carduelis carduelis European Goldfinch 0.280 0.298 0.273 0.282 0.228 Carduelis chloris European Greenfinch 0.262 0.276 0.254 0.269 0.221 Carduelis spinus Eurasian Siskin 0.332 0.406 0.479 0.408 0.631 Carpodacus erythrinus Common Rosefinch 0.502 0.673 0.721 0.637 0.749 Certhia brachydactyla Short-toed Treecreeper 0.284 0.285 0.296 0.278 0.268 Certhia familiaris Eurasian Treecreeper 0.249 0.365 0.443 0.366 0.379 -9- Latin Name English Name VI ref VI b2.50 VI b2.00 VI a1.50 VI a1.00 *Charadrius dubius Little Ringed Plover 0.337 0.331 0.330 0.323 0.286 Ciconia ciconia White Stork 0.439 0.555 0.675 0.683 0.735 Cinclus cinclus White-throated Dipper 0.295 0.331 0.351 0.324 0.361 Coccothraustes coccothraustes Hawfinch 0.307 0.316 0.337 0.310 0.337 Columba oenas Stock Dove 0.359 0.395 0.387 0.373 0.353 Columba palumbus Common Wood Pigeon 0.233 0.250 0.252 0.238 0.224 Corvus corax Northern Raven 0.279 0.307 0.327 0.309 0.350 Corvus corone corone Carrion Crow 0.220 0.279 0.336 0.292 0.475 Corvus frugilegus Rook 0.379 0.420 0.447 0.517 0.562 Corvus monedula Western Jackdaw 0.332 0.331 0.329 0.319 0.265 Coturnix coturnix Common Quail 0.279 0.401 0.392 0.360 0.321 Crex crex Corn Crake 0.396 0.579 0.606 0.552 0.592 Cuculus canorus Common Cuckoo 0.242 0.225 0.226 0.230 0.220 Delichon urbicum Common House Martin 0.305 0.356 0.302 0.316 0.252 Dendrocopos major Great Spotted Woodpecker 0.223 0.219 0.213 0.202 0.194 Dendrocopos medius Middle Spotted Woodpecker 0.385 0.451 0.474 0.418 0.491 Dendrocopos minor Lesser Spotted Woodpecker 0.318 0.292 0.276 0.279 0.235 Dryocopus martius Black Woodpecker 0.249 0.310 0.359 0.341 0.315 Emberiza calandra Corn Bunting 0.385 0.476 0.389 0.352 0.293 Emberiza cia Rock Bunting 0.383 0.322 0.306 0.343 0.277 Emberiza cirlus Cirl Bunting 0.343 0.292 0.271 0.278 0.214 Emberiza citrinella Yellowhammer 0.274 0.358 0.340 0.336 0.273 Emberiza hortulana Ortolan Bunting 0.489 0.450 0.420 0.502 0.385 Emberiza schoeniclus Common Reed Bunting 0.367 0.521 0.583 0.475 0.636 Erithacus rubecula European Robin 0.231 0.226 0.237 0.227 0.281 Falco peregrinus Peregrine Falcon 0.308 0.283 0.262 0.264 0.236 Falco subbuteo Eurasian Hobby 0.326 0.321 0.321 0.313 0.400 Falco tinnunculus Common Kestrel 0.221 0.211 0.208 0.255 0.234 Ficedula hypoleuca European Pied Flycatcher 0.364 0.566 0.633 0.551 0.652 Fringilla coelebs Common Chaffinch 0.226 0.233 0.233 0.231 0.241 Fulica atra Eurasian Coot 0.362 0.391 0.403 0.381 0.404 *Gallinago gallinago Common Snipe 0.523 0.528 0.525 0.528 0.530 Gallinula chloropus Common Moorhen 0.339 0.314 0.314 0.300 0.289 Garrulus glandarius Eurasian Jay 0.235 0.223 0.224 0.216 0.216 Glaucidium passerinum Eurasian Pygmy Owl 0.421 0.566 0.688 0.564 0.734 Hippolais icterina Icterine Warbler 0.449 0.547 0.610 0.612 0.694 Hippolais polyglotta Melodious Warbler 0.382 0.346 0.344 0.335 0.295 Hirundo rustica Barn Swallow 0.296 0.355 0.324 0.317 0.292 Ixobrychus minutus Little Bittern 0.405 0.355 0.333 0.348 0.291 Jynx torquilla Eurasian Wryneck 0.311 0.284 0.263 0.253 0.233 Lagopus muta Rock Ptarmigan 0.436 0.539 0.628 0.574 0.756 Lanius collurio Red-backed Shrike 0.279 0.263 0.239 0.266 0.218 Lanius senator Woodchat Shrike 0.483 0.523 0.472 0.413 0.350 *Larus michahellis Yellow-legged Gull 0.386 0.335 0.310 0.329 0.270 *Larus ridibundus Common black-headed Gull 0.527 0.679 0.691 0.665 0.702 *Locustella luscinioides Savi's Warbler 0.433 0.551 0.695 0.623 0.714 Locustella naevia Common Grasshopper Warbler 0.371 0.406 0.426 0.375 0.383 Loxia curvirostra Red Crossbill 0.269 0.407 0.506 0.403 0.620 - 10 - Latin Name English Name VI ref VI b2.50 VI b2.00 VI a1.50 VI a1.00 Lullula arborea Woodlark 0.343 0.413 0.457 0.458 0.449 Luscinia megarhynchos Common Nightingale 0.335 0.289 0.267 0.275 0.214 Luscinia svecica svecica Red-spotted Bluethroat 0.426 0.622 0.681 0.649 0.687 Mergus merganser Common Merganser 0.419 0.394 0.455 0.421 0.622 Merops apiaster European Bee-eater 0.400 0.405 0.298 0.346 0.250 Milvus migrans Black Kite 0.261 0.353 0.391 0.292 0.319 Milvus milvus Red Kite 0.356 0.531 0.601 0.453 0.652 Monticola saxatilis Rufous-tailed Rock Thrush 0.417 0.378 0.364 0.475 0.474 Monticola solitarius Blue Rock-Thrush 0.476 0.413 0.361 0.397 0.288 Montifringilla nivalis White-winged Snowfinch 0.423 0.512 0.584 0.538 0.726 Motacilla alba White Wagtail 0.252 0.268 0.267 0.297 0.305 Motacilla cinerea Grey Wagtail 0.263 0.276 0.290 0.282 0.288 *Motacilla flava Western Yellow Wagtail 0.380 0.325 0.270 0.284 0.209 Muscicapa striata Spotted Flycatcher 0.271 0.272 0.281 0.264 0.254 *Netta rufina Red-crested Pochard 0.384 0.375 0.435 0.411 0.599 Nucifraga caryocatactes Spotted Nutcracker 0.340 0.452 0.567 0.443 0.698 *Numenius arquata Eurasian Curlew 0.486 0.762 0.787 0.723 0.787 Oenanthe oenanthe Northern Wheatear 0.363 0.430 0.528 0.501 0.637 Oriolus oriolus Eurasian Golden Oriole 0.319 0.302 0.291 0.283 0.240 Otus scops Eurasian Scops Owl 0.445 0.401 0.321 0.349 0.233 *Panurus biarmicus Bearded Reedling 0.527 0.703 0.662 0.666 0.479 Parus ater Coal Tit 0.259 0.310 0.377 0.338 0.464 Parus caeruleus Blue Tit 0.247 0.222 0.205 0.214 0.175 Parus cristatus European Crested Tit 0.243 0.315 0.411 0.349 0.497 Parus major Great Tit 0.243 0.220 0.205 0.209 0.175 Parus montanus Willow Tit 0.226 0.268 0.347 0.292 0.454 Parus palustris Marsh Tit 0.256 0.258 0.272 0.252 0.284 Passer domesticus House Sparrow 0.309 0.435 0.582 0.359 0.625 Passer montanus Eurasian Tree Sparrow 0.285 0.368 0.304 0.262 0.226 Pernis apivorus European Honey Buzzard 0.261 0.256 0.267 0.249 0.245 Phoenicurus ochruros Black Redstart 0.228 0.332 0.424 0.418 0.528 Phoenicurus phoenicurus Common Redstart 0.295 0.281 0.283 0.265 0.260 Phylloscopus bonelli Western Bonelli's Warbler 0.310 0.340 0.372 0.334 0.357 Phylloscopus collybita Common Chiffchaff 0.234 0.246 0.256 0.261 0.298 Phylloscopus sibilatrix Wood Warbler 0.304 0.331 0.345 0.297 0.303 *Phylloscopus trochilus Willow Warbler 0.350 0.410 0.458 0.403 0.473 Pica pica Eurasian Magpie 0.257 0.342 0.390 0.296 0.380 Picoides tridactylus Eurasian Three-toed Woodpecker 0.468 0.635 0.749 0.613 0.763 Picus canus Grey-headed Woodpecker 0.304 0.396 0.460 0.361 0.490 Picus viridis European Green Woodpecker 0.236 0.221 0.225 0.213 0.208 *Podiceps cristatus Great Crested Grebe 0.400 0.442 0.485 0.450 0.511 *Podiceps nigricollis Black-necked Grebe 0.501 0.602 0.559 0.586 0.460 Porzana porzana Spotted Crake 0.432 0.669 0.671 0.516 0.529 Prunella collaris Alpine Accentor 0.419 0.480 0.539 0.531 0.681 Prunella modularis Dunnock 0.256 0.303 0.417 0.403 0.631 Ptyonoprogne rupestris Eurasian Crag Martin 0.359 0.344 0.307 0.333 0.266 Pyrrhocorax graculus Alpine Chough 0.379 0.400 0.409 0.442 0.482 *Pyrrhocorax pyrrhocorax Red-billed Chough 0.439 0.508 0.485 0.537 0.470 - 11 - Latin Name English Name VI ref VI b2.50 VI b2.00 VI a1.50 VI a1.00 Pyrrhula pyrrhula Eurasian Bullfinch 0.286 0.401 0.490 0.404 0.608 Rallus aquaticus Water Rail 0.368 0.353 0.359 0.340 0.337 Regulus ignicapilla Firecrest 0.281 0.406 0.502 0.397 0.658 Regulus regulus Goldcrest 0.250 0.337 0.426 0.335 0.546 *Riparia riparia Sand Martin 0.388 0.439 0.415 0.376 0.354 Saxicola rubetra Whinchat 0.335 0.471 0.542 0.505 0.653 Saxicola torquatus Eurasian Stonechat 0.320 0.328 0.317 0.310 0.272 Scolopax rusticola Eurasian Woodcock 0.349 0.412 0.525 0.441 0.653 Serinus citrinella Citril Finch 0.389 0.522 0.651 0.571 0.746 Serinus serinus European Serin 0.267 0.299 0.277 0.284 0.234 Sitta europaea Eurasian Nuthatch 0.257 0.252 0.249 0.237 0.227 *Sterna hirundo Common Tern 0.436 0.502 0.507 0.511 0.515 Streptopelia decaocto Eurasian Collared Dove 0.296 0.269 0.243 0.263 0.205 Streptopelia turtur European Turtle Dove 0.350 0.328 0.302 0.309 0.253 Strix aluco Tawny Owl 0.274 0.283 0.299 0.291 0.347 Sturnus vulgaris Common Starling 0.281 0.341 0.324 0.297 0.270 Sylvia atricapilla Eurasian Blackcap 0.233 0.212 0.200 0.203 0.172 Sylvia borin Garden Warbler 0.263 0.353 0.449 0.369 0.612 Sylvia communis Common Whitethroat 0.277 0.351 0.330 0.297 0.248 Sylvia curruca Lesser Whitethroat 0.269 0.270 0.319 0.350 0.449 Sylvia nisoria Barred Warbler 0.627 0.724 0.662 0.730 0.515 *Tachybaptus ruficollis Little Grebe 0.367 0.354 0.356 0.335 0.323 Tetrao tetrix Black Grouse 0.416 0.478 0.577 0.531 0.702 *Tetrao urogallus Western Capercaillie 0.406 0.577 0.698 0.560 0.723 Tichodroma muraria Wallcreeper 0.405 0.412 0.419 0.410 0.428 Troglodytes troglodytes Winter Wren 0.224 0.230 0.243 0.232 0.262 Turdus merula Common Blackbird 0.235 0.218 0.211 0.209 0.192 Turdus philomelos Song Thrush 0.265 0.340 0.428 0.312 0.507 Turdus pilaris Fieldfare 0.292 0.523 0.630 0.504 0.694 Turdus torquatus Ring Ouzel 0.375 0.510 0.634 0.555 0.709 Turdus viscivorus Mistle Thrush 0.253 0.323 0.425 0.359 0.540 Tyto alba Barn Owl 0.337 0.475 0.539 0.339 0.375 Upupa epops Eurasian Hoopoe 0.338 0.289 0.256 0.267 0.209 Vanellus vanellus Northern Lapwing 0.410 0.640 0.723 0.646 0.728 - 12 - Appendix S4 The effect of different weightings of the indicators on the vulnerability index The weighting of the different indicators is admittedly arbitrary. For the vulnerability index presented here, we weighted the three operational aspects of vulnerability (change in distribution, reservoirs and population trend) equally (see Fig. 1 in the main text). We explored the effects of seven other weightings (see Table S4.1) on the resulting vulnerability index. VI-2 is the vulnerability index proposed in this paper. VI-1 is simply the average of the 5 base indicators. VI-3 and VI-4 give more weight to ITrend, while VI-5 gives a higher weight to the change in distribution and VI-6 gives a higher weight to the reservoirs. VI-7 and VI-8 represent subsets of the index: VI-8 considers the change in distribution and reservoirs, while VI-7 only considers the change in distribution. Table S4.1 Various weightings of the indicators to explore the effect of weightings on the final vulnerability index (VI). VI-2 is the vulnerability index proposed in this paper. Index Index calculation VI-1 [IAO + IOverlap + IReCH + IReEU + ITrend]/5 VI-2 [(IAO + IOverlap)/2 + (IReCH + IReEU)/2 + ITrend]/3 VI-3 [(IAO + IOverlap)/2 + (IReCH + IReEU)/2 + 2*ITrend]/4 VI-4 [(IAO + IOverlap)/2 + (IReCH + IReEU)/2 + 1.5*ITrend]/3.5 VI-5 [IAO + IOverlap + (IReCH + IReEU)/2 + ITrend]/4 VI-6 [(IAO + IOverlap)/2 + IReCH + IReEU + ITrend]/4 VI-7 (IAO + IOverlap)/2 VI-8 [(IAO + IOverlap)/2 + (IReCH + IReEU)/2]/2 The ranking of the species according to the vulnerability index proposed in this paper, VI-2, is highly correlated (correlation coefficients >= 0.974) to the ranking of the tested alternative indices VI-1 to VI-6 for all the four scenarios considered (VIa1.50, VIb2.50, VIa1.00, and VIb2.00) as shown in Table S4.2. A reasonably good correlation also exist with indices that only integrates a subsample of the base indicators: correlations with VI-7 (only 2 indicators expressing the change in distribution) starts from 0.742, and correlations with VI-8 (indicators on distributional change and reservoirs) are higher than 0.975 for the different scenarios and time horizons. These results suggest that the integration of the reservoirs does significantly modify the sequence of the species along the vulnerability gradient but without revolutionizing it, and that population trend only has a marginal effect on the final ranking. - 13 - Table S4.2 Spearman's rank correlation between the proposed index (VI-2) and different alternative indices calculated applying different weighting to the base indicators (see table S4.1 for description). Correlations are calculated for the four scenarios VIa1.50, VIb2.50, VIa1.00, and VIb2.00. Comparison VI-2 – VI-1 VI-2 – VI-3 VI-2 – VI-4 VI-2 – VI-5 VI-2 – VI-6 VI-2 – VI-7 VI-2 – VI-8 VIb2.50 VIb2.00 VIa1.50 VIa1.00 0.993 0.975 0.993 0.979 0.978 0.752 0.975 0.995 0.984 0.996 0.986 0.983 0.832 0.983 0.993 0.974 0.993 0.977 0.979 0.742 0.979 0.996 0.989 0.996 0.984 0.986 0.830 0.984 - 14 -