Table S2. Genes in lateral root initiation Cluster 5 functional gene set that were significantly over-represented in the two graft comparisons
dgt/dgt vs VFN8/VFN8 (13 genes) and dgt/dgt vs VFN8/dgt (9 genes). slgene: S. lycopersicum gene ID; FC: fold change between gt1 and gt2;
atgene: A. thaliana gene ID of which slgene is putative ortholog; four graft-pair columns: mean normalized expression in root RNA-seq
experiment. symbols and desc from TAIRi.
i
Lamesch, Philippe, et al. "The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools." Nucleic acids research
40.D1 (2012): D1202-D1210.
gt1
dgt/dgt
dgt/dgt
gt2
VFN8/VFN8
VFN8/dgt
slgene
Solyc02g093950
Solyc01g087720
FC
0.42
2.1
atgene VFN8/ VFN8VFN8/ dgt dgt/ VFN8 dgt/ dgt
AT5G14230
10.02
4.61
9.56
4.19
AT5G15920
7.48
11.81
8.11
15.75
Solyc03g118820
Solyc04g015600
Solyc02g091930
3.8
2.2
3.9
AT1G73640
AT2G41820
AT4G16780
4.07
4.34
26.76
6.2
5.36
45.85
2.45
3.6
23.78
Solyc03g113920
2
AT5G26920
5.47
4.34
6.34
Solyc06g074630
2.2
AT5G22740
10.37
21.8
10.03
Solyc01g088440
0.36
AT3G60220
10.77
5.73
9.78
Solyc01g091110
0.36
AT4G00080
9.64
13.49
9.32
Solyc08g082250
2.1
AT1G64390
82.71
95.53
89.17
Solyc07g020960
2.4
AT2G20100
28.23
45.28
27.51
Solyc11g069190
2.5
AT5G60450
19.58
21.24
19.03
Solyc03g121060
Solyc03g118820
Solyc02g091930
4.5
2.5
2.3
AT3G16500
AT1G73640
AT4G16780
8.54
4.07
26.76
14.65
6.2
45.85
7.29
2.45
23.78
Solyc03g113920
2.6
AT5G26920
5.47
4.34
6.34
Solyc01g091110
0.26
AT4G00080
9.64
13.49
9.32
Solyc06g050170
2
AT2G40540
13.64
11.76
14.89
Solyc06g059860
Solyc11g069190
3.5
2.3
AT1G21390
AT5G60450
2.01
19.58
4.89
21.24
1.46
19.03
Solyc03g121060
2.6
AT3G16500
8.54
14.65
7.29
Solyc04g079420
2.1
AT3G26470 18.71
10.04
17.53
symbols
desc
Ankyrin repeat family protein, IPR002110, Ankyrin
SMC5
Structural maintenance of chromosomes family protein,
IPR003395, RecF/RecN/SMC protein, N-terminal
15.57
AtRABA6b,RABA6b Ras-related protein Rab-25, IPR015595, Rab11-related
9.37
Receptor like kinase, RLK
104.21 ATHB-2, HAT4,ATHB2,HB-2
Homeobox-leucine zipper protein 22, IPR003106, Leucine
zipper, homeobox-associated
11.21
Calmodulin-binding protein, IPR012416, Calmodulin
binding protein-like
23.24 ATCSLA02,ATCSLA2,CSLA2
Cellulose synthase-like C6 glycosyltransferase family 2,
IPR001173, Glycosyl transferase, family 2
3.85
Ring H2 finger protein, IPR018957, Zinc finger, C3HC4
RING-type
3.44
UNE11
Pectinesterase/pectinesterase inhibitor 3, IPR006501,
Pectinesterase inhibitor
176.81
AtGH9C2,GH9C2
Endoglucanase 1, IPR001701, Glycoside hydrolase, family
9
66.49
BHLH transcription factor-like protein, IPR011598, Helixloop-helix DNA-binding
48.16
ARF4
Auxin response factor 4, IPR003340, Transcriptional factor
B3, auxin response factor 4,arf4
38.05
PAP1,IAA26
Auxin response factor 9, IPR003311, AUX/IAA protein
15.57
AtRABA6b,RABA6b Ras-related protein Rab-25, IPR015595, Rab11-related
104.21 ATHB-2, HAT4,ATHB2,HB-2
Homeobox-leucine zipper protein 22, IPR003106, Leucine
zipper, homeobox-associated
11.21
Calmodulin-binding protein, IPR012416, Calmodulin
binding protein-like
3.44
UNE11
Pectinesterase/pectinesterase inhibitor 3, IPR006501,
Pectinesterase inhibitor
24
KT2,SHY3,KUP2,TRK2 Potassium transporter, IPR003855, K+ potassium
transporter
17.26
emb2170
Unknown Protein
48.16
ARF4
Auxin response factor 4, IPR003340,Transcriptional factor
B3, auxin response factor 4,arf4
38.05
PAP1,IAA26
Auxin response factor 9, IPR003311, AUX/IAA protein
20.72
ADR1-L1
Nbs-lrr, resistance protein