Oral presentation: Steelhead symposium Understanding the Rock Creek, WA, steelhead population through the use of PIT tags and genetic evaluation. Brady Allen1, Elaine Harvey2, and Andrew Matala3 1U.S. Geological Survey Western Fisheries Research Center, Columbia River Research Laboratory 5501-a Cook-Underwood Rd. Cook, WA 98672 Phone: 509-538-2299 x356 Email: ballen@usgs.gov 2 Yakama Nation Fisheries, Goldendale Field Office P.O. Box 655 Goldendale, WA 98620 3 Columbia River Inter-Tribal Fish Commission, Hagerman Genetics Laboratory 3059F National Fish Hatchery Road Hagerman, Idaho 83332 Phone: (208) 837-9096 Presenter: Brady Allen Abstract: The U.S. Geological Survey collaborated with the Yakama Nation starting in fall of 2009 to study fish populations in Rock Creek, a southwest WA tributary of the Columbia River 21 kilometers upstream of John Day Dam. Prior to this study, little was known about the ESAlisted Mid-Columbia River steelhead (Oncorhynchus mykiss) population in this arid watershed with intermittent stream flow. The objectives of the study were to quantify fish habitat, identify areas of high salmonid productivity, and document fish distribution, abundance, and movement. We assessed the movement of fish into and out of Rock Creek by building, installing, and operating two passive integrated transponder (PIT) tag interrogation systems at rkm 5 and rkm 13. We PIT-tagged 3,088 O. mykiss from fall 2009 to fall 2012. About 27% of those PIT-tagged were detected outmigrating to the Columbia River. As of December 2013, nine fish that were tagged in Rock Creek as juveniles have returned as adults to Bonneville Dam. In addition, 34 adult steelhead PIT-tagged by others have been detected in Rock Creek, of which, 22 were of known origin. Of these, 85% were tagged or released in the Snake River and many (55%) were barged as juveniles from Lower Granite Dam. Most (76%) of the adult steelhead eventually entering Rock Creek first swam past it and were detected passing McNary Dam, 100-km upstream. Representative samples from the O. mykiss were submitted to the Columbia River Inter-Tribal Fish Commission for genetic analysis. Many individual fish were genetically assigned to Rock Creek, which suggests that Rock Creek supports a distinct local population. However, introgression by stray Snake River fish was prevalent and spatially distributed throughout Rock Creek. These results have implications for the management of Rock Creek and Snake River steelhead populations as well as McNary Dam.