1 Supplementary figures 2 Figure S1: 3 4 5 6 7 8 9 10 A) Gating strategy for the analysis of CD4+CD25high T cells. Using a BD FACSAria sorter, CD4+CD25- and CD4+CD25high lymphocytes were identified and sorted as described previously [11], CD4 FITC labelled, CD25 Alexa-Fluor 647 labelled. After 4 days of culture, CD4 labelling was virtually unchanged (histogram). Thus, in a mixture of previously stained and sorted responder and unstained stimulator cells (irradiated PBMC), a gate could be set around CD4+ cells to exclude irradiated T cells from the subsequent analysis. In case of cultured (expanded) CD4+CD25high cells, only one gate was required In case of cultured CD4+CD25- cells, two gates were placed, defining CD4+CD25- and (induced) CD4+CD25high cells. 11 12 B) Strategy of in vitro induction or expansion of CD4+CD25high T cells. 13 14 15 16 17 18 19 20 21 22 Freshly isolated PBMC from healthy or IBH-affected horses were sorted according to their expression of CD4 and CD25. The CD25high gate was set to incorporate only the top 3% of all CD4+ T cells with the brightest fluorescence signal for CD25. Sorted CD4+CD25- or CD4+CD25high cells were cultured with Culicoides-pulsed irradiated autologous-PBMC in the absence or the presence of two different sets of stimuli (1 or 2). Four days later, resorting was performed. + high were induced in the presence of Culicoides alone; I1CD4+CD25high were induced in ICD4 CD25 + high the presence of Culicoides, rIL-2 and rTGFwere induced in the presence of I2CD4 CD25 Culicoides, retinoic acid and rapamycin. Similarly expanded CD4+CD25high cells were obtained. The expanded and induced cells were then used in the suppression assay or in the determination of FoxP3 and cytokine expression by flow cytometry. 23 C) Analysis of cytokine production by Culicoides-stimulated CD4+CD25high T cells 24 25 26 27 28 29 30 5x105 CD4+CD25high sorted lymphocytes were cultured with 4x105 irradiated autologous Culicoides-pulsed PBMC (stimulators). 4 days later, the cells were harvested and triple intracellular staining for FoxP3, IL-4 and IL-10 or their respective isotype controls (Isc.) was performed. The percentage of IL-4, FoxP3 and IL-10 was measured using flow cytometry. Data displayed are from one representative IBH-not suppressing (IBH-N-sup), IBH-suppressing (IBHsup) or healthy Icelandic horse. Lines were set according to the isotype controls to discriminate negative from positive population 31 32 33 Figure S2: Comparing the ability of CD4+CD25high T cells to suppress proliferation of Culicoides-stimulated CD4+CD25- cells at a ratio of 1:1 and 1:0.25 34 35 36 37 5x104 CD4+CD25- sorted lymphocytes from freshly isolated peripheral blood mononuclear cells (PBMC) from 1st generation IBH-affected (n=5) and 2nd generation healthy (n= 5) Icelandic horses were cultured with 5x104 irradiated autologous Culicoides-pulsed PBMC (stimulator) alone (CD4+CD25-) or in the presence of freshly isolated CD4+CD25high cells (CD4+CD25- + 1 1 2 3 4 CD4+CD25high) in a ratio of 1:1 or 1:0.25. Proliferation was measured using [3H] thymidine incorporation. Results are shown as count per minute (CPM). Dots represent individual horses. *p ≤ 0.05 in the Wilcoxon signed-rank paired t-Test indicate significant differences to CD4+CD25- cells. 5 6 7 Figure S3: Inability of CD4+CD25dim T cells to suppress proliferation of Culicoides- or Tetanus toxoid-stimulated-CD4+CD25- cells. 8 9 10 11 12 13 14 5x104 CD4+CD25- sorted lymphocytes from freshly isolated peripheral blood mononuclear cells (PBMC) from 2nd generation healthy (n= 14) or 1st generation IBH-affected (n=14) Icelandic horses were cultured with 5x104 irradiated autologous Culicoides-or Tetanus toxoid-pulsed PBMC (stimulator) alone (CD4+CD25-) or in the presence of freshly isolated CD4+CD25dim cells (CD4+CD25- + CD4+CD25dim) in a ratio of (1: 0.25). Proliferation was measured using [3H] thymidine incorporation. Results are shown as count per minute (CPM). Dots represent individual horses. 15 16 2