JOB DESCRIPTION Job Title: Research Associate Division: National Heart and Lung Institute Section: Molecular Genetics and Genomics Job Family: Academic and Research, Level B Salary: £32,750 - £41,540 per annum Responsible to: Professor Michael Lovett Works Closely with: Professor Michael Lovett, other sectional research, technical and administrative staff. Contract: Full-time and fixed-term for 3 years Location: Royal Brompton Campus Summary of Post: You will be a highly motivated Post-Doctoral Research Associate with strong skills in molecular biology and preferably some training in bioinformatics/computational biology. They will work directly under the supervision of Professor Michael Lovett as part of a multidisciplinary group focused upon developing and applying innovative, new genomic technologies. The Lovett group and their collaborators have been the leaders in applying genomic approaches to the regenerating sensory epithelia of the inner ear and to other epithelial systems. The extensive datasets they have acquired include comprehensive transcriptomics and enhancer maps of regenerating systems, as well as many large datasets from different model organisms. You will join a team that are now employing insights from these datasets to investigate regulatory networks by a combination of RNAi, RNA-seq and single cell genomic analysis. You will apply new methods for single cell genomic analysis (developed in the Lovett group) to investigate subpopulations of cells within developing/regenerating epithelial cell types. Initially, this will involve conducting mRNA-seq on very small cell numbers, such as microdissected or FACs-sorted sensory hair cells of the inner ear. This will progress to single cell analysis and to miRNA target capture techniques and may also include analysis of epigenetic marks. You will be expected to work on refining and applying novel cDNA methods for analysing very small RNA samples You will be expected to apply these methods to a wide range of biological samples provided by collaborators and colleagues You are expected to derive cDNA populations that are appropriate for Next Gen DNA sequence analysis You are expected to be responsible for the instruments in the laboratory that you will be using, and to learn and apply any new techniques needed for successful completion of the study You are expected to collaborate closely with a network of investigators throughout the UK and abroad and contribute to face-to-face meetings and monthly teleconferences You will be expected to acquire the basic computational skills necessary for data analysis You are expected to analyse the data acquired, and to present data to the research group on a regular basis, and to departmental meetings You are expected to submit publications to refereed journals and may be involved in applications to attract external research funding Key Responsibilities: The main purpose of the post is to refine and apply novel single cell genomics methods and apply them to understanding how different epithelial cell types are specified and maintained. The techniques employed for the research will include: RNA/DNA isolation Molecular biology skills, such as PCR, gel electrophoresis, RNAi etc. A range of novel cDNA methodologies The production of sequence-ready DNA libraries Some computational analysis of Next Gen sequence datasets Research Duties: To take initiative in the planning of research To familiarise with new techniques needed for project To conduct data analysis To ensure the validity and reliability of data at all times To maintain accurate and complete records of all findings To write reports for submission to research sponsors To present findings to colleagues and at conferences To submit publications to refereed journals To provide guidance to staff and students To attend relevant workshops and conferences as necessary To develop contacts and research collaborations within the College and the wider community To promote the reputation of the group, the department and the College To provide guidance to PhD Students To maintain a highly organised and accurate record of experimental work To actively participate in the research programme of the group To publish in high quality journals and to present data at national and international meetings To participate in group research meetings and internal seminars To work out of normal working hours (including weekends) if the requirements of the project demand To collaborate with other allied scientists within Imperial College and elsewhere in London and abroad, as appropriate To contribute to the smooth running of the group’s laboratories and, facilities with other scientists, clinicians, technicians and students within the laboratories To assist in the supervision of undergraduate and postgraduate research students and research assistants as required To comply with the College, Division, and Unit safety practices and to attend courses on safety when appropriate Any other duties as may be deemed reasonable by Head of group Other Duties: To undertake appropriate administration tasks To attend relevant meetings To undertake any necessary training and/or development To observe and comply with all College policies and regulations, including the key policies and procedures on Confidentiality, Conflict of Interest, Data Protection, Equal Opportunities, Financial Regulations, Health and Safety, Imperial Expectations (for new leaders, managers and supervisors), Information Technology, Private Engagements and Register of Interests, and Smoking. To undertake specific safety responsibilities relevant to individual roles, as set out on the College Website Health and Safety Structure and Responsibilities page (http://www3.imperial.ac.uk/safety/policies/organisationandarrangements). Job descriptions cannot be exhaustive and the post-holder may be required to undertake other duties, which are broadly in line with the above key responsibilities. Imperial College is committed to equality of opportunity and to eliminating discrimination. All employees are expected to adhere to the principles set out in its Equal Opportunities in Employment Policy, Promoting Race Equality Policy and all other relevant guidance/practice frameworks. IMPERIAL COLLEGE LONDON PERSON SPECIFICATION Qualification/Knowledge: Essential Educated to PhD level Extensive knowledge of, and a strong interest in, molecular biology and genomics methodologies and concepts Experience: Essential Previous experience and high level of technical skill in molecular biology techniques: RNA isolation and handling, mRNA preparation, cDNA methods, RNA interference in primary cells Desirable Prior experience in the preparation of samples for RNA-sequence analysis by Next Gen DNA sequencing Some prior experience with genomic analysis software packages, such as Partek, Ingenuity etc Some experience in computer programming, particularly Perl, Python, R or Unix A good record of current academic publications or publications in preparation Skills/Abilities: Essential A high level of technical competence in molecular biology techniques, including the extraction and handling of RNA/DNA and in cDNA synthesis Exceptional organisational and time management skills Excellent working knowledge of Microsoft Office and particularly of Microsoft Excel Excellent written and verbal communication skills Ability to follow protocols and learn new techniques in a concise and highly skilled manner Ability to work constructively and effectively within a research group Ability to work autonomously, tenaciously and show initiative with research Ability to prioritise a varied workload and work under pressure to meet deadlines, while maintaining a high level of accuracy Other requirements: Active involvement with daily running and functioning of the laboratory Individual must be prepared to work unsociable hours as work demands from time to time