10th grade Biology Level 3 Vocabulary list: Introduction to Biology: Biology – the study of life Organism – a living thing; anything that can carry out the processes of life independently Cell – a highly organized, tiny structure that is enclosed in a membrane Multicellular organism – an organism with more than 1 cell Specialized – has a certain job Unicellular organism – an organism made of only 1 cell Homeostasis – maintaining constant internal conditions regardless of external changes Metabolism – the sum of all chemical reactions carried out in an organism Heterotrophs – organisms that consume food Autotrophs – organisms that make their own food through the process of photosynthesis Responsiveness – living organisms react to their own environment Reproduction – production of offspring Heredity – the passing of traits from parent to offspring Asexual reproduction – production of offspring that is identical to the 1 parent Sexual reproduction – production of offspring that has a mix of traits from 2 parents Growth – increasing in size or number of cells Development – a change in form over the course of an organism’s life Taxonomy – the study of the classification of organisms Taxa – the categories into which organisms are grouped Scientific method: Observation – the act of perceiving or noting events using the senses Direct observation – things we can see Indirect observation – things that cannot be seen but must be observed based on things we can see Hypothesis – a possible explanation that can be tested by observation or experimentation Qualitative data – can be observed but not measured Quantitative data – can be measured Experiment – a procedure that is carried out under controlled conditions to test a hypothesis Control group – receives no experimental treatment Independent variable – the single factor that scientists can change in an experiment Dependent variable – factors that may change as a result of the independent variable Belief – opinion or conviction that something is true Fact – truth known by actual experience or evidence Theory – a system of ideas that explains many related observations and is supported by a large body of evidence acquired through scientific observation Principle/law – truths that are valid everywhere in the universe Biochemistry Part I Matter – anything that has mass and takes up space Atom – smallest unit of matter that cannot be broken down by chemical means Isotope – atoms that differ in their number of neutrons Molecule – a group of atoms held together by covalent bonds Compound – bonded atoms of two or more different elements Chemical formula – shows the kind and proportion of atoms Structural formula – shows the arrangement of atoms within the molecule Ion – atom that has a charge due to gaining or losing electrons Ionic bond – the attractive force between two oppositely charged ions Covalent bond – formed when atoms share electrons Solution – a mixture in which ions or other molecules are evenly distributed in another substance Acid – compounds that increase the number of hydrogen/hydronium ions when dissolved in water Base – compounds that increase the number of hydroxide ions when dissolved in water pH – a measure of how acidic or basic a solution is Buffer – a substance that can prevent changes in pH Biochemistry Part II Polar – molecules with partial charges on opposite ends Hydrogen bond – Hydrogen ion on one molecule is attracted to a negatively charged atom on an adjacent molecule Cohesion – water is attracted to itself Surface tension – cohesive forces cause water to act as though there is a thin “skin” on the surface Adhesion – water is attracted to something other than itself Capillarity – adhesion and cohesion cause water to move upward through small tubes against gravity DNA Part I Genes – the instructions for inherited traits DNA replication – the process in which DNA makes an exact copy of itself prior to cell division DNA and protein synthesis Part II mRNA – messenger RNA; a copy of the DNA code that can leave the nucleus and deliver the instructions to make a protein to the ribosome Ribosome – a part of the cell that makes proteins rRNA – ribosomal RNA; makes up the ribosomes tRNA – transfer RNA; brings amino acids to the ribosome to build proteins Transcription – the process of making mRNA from DNA Translation – the process of making a protein Codon – a group of 3 nucleotides on an mRNA molecule; represents 1 amino acid Anticodon – a group of 3 nucleotides on a tRNA molecule Gene mutation – a change in the sequence of bases within a gene Frameshift mutation – a base is added or removed in a gene Point mutation – 1 base is substituted for another in a gene Cell growth and reproduction Chromatin – DNA and protein seen in a non-dividing cell Chromosomes – DNA and protein in a dividing cell; formed when chromatin coils Histones – proteins that help to coil the DNA Chromatids – the two identical halves of a replicated chromosome Centromere – holds the sister chromatids together on a replicated chromosome Interphase – time in-between cell divisions G1 phase – part of interphase during which the cell grows and performs most activities S phase – the part of interphase during which DNA replication occurs G2 phase – the part of interphase during which the cell grows and prepares for cell division G0 phase – exiting the cell cycle; cells that never divide again remain in this stage M phase – mitosis; the stage during which cell division occurs Mitosis – the process of dividing the DNA between 2 new cells Cytokinesis – the process of splitting the cytoplasm between 2 new cells Prophase – first phase of mitosis; nuclear membrane and nucleolus disappear; spindle fibers form; chromosomes become visible and attach to spindle fibers Metaphase – second phase of mitosis; chromosomes line up at the middle of the cell Anaphase – third phase of mitosis; sister chromatids separate and become daughter chromosomes Telophase – the last phase of mitosis; cell divides; nuclear membrane and nucleolus reappear; spindle fibers disappear; chromosomes turn back into chromatin Spindle fibers – help chromosomes to divide during mitosis Nuclear membrane – surrounds the nucleus; disappears during cell division Nucleolus – found within the nucleus and disappears during cell division Binary fission – process of cell division used by bacteria Meiosis and sexual reproduction Sexual reproduction – offspring are produced from a union of egg and sperm; offspring are different from parents Asexual reproduction – offspring are produced from one parent; offspring are identical to the parent Gamete – a sex cell; eggs and sperm Egg – female sex cell Sperm – male sex cell Zygote – a fertilized egg; formed when a sperm cell fertilizes an egg cell Fertilization – occurs when a sperm cell fuses with an egg cell Fragmentation – body breaks into several parts; each part grows into a new organism; a form of asexual reproduction Budding – new individuals break off from existing ones; a form of asexual reproduction Binary fission – a process of cell division used by bacteria Parthenogenesis – a female makes a viable egg that grows into an adult without being fertilized by a sperm cell Somatic cells – body cells that do not participate in sexual reproduction Germ cells – cells specialized for sexual reproduction, such as eggs and sperm Karyotype – a picture of the chromosomes Homologous chromosomes – chromosomes with the same genes Sex chromosomes – chromosomes that determine gender Autosomes – chromosomes that have nothing to do with determining gender Diploid – a cell that has two chromosomes from each homologous pair Haploid – a cell that has one chromosome from each homologous pair Meiosis – a process of cell division that makes eggs and sperm; reduces the chromosome number by half Crossing over – chromosomes exchange genetic material Trisomy – having three copies of one chromosome instead of two Monosomy – having only one copy of a chromosome instead of two Deletion – when a section of a chromosome is missing Duplication – when a section of a chromosome is repeated Translocation – when two non-homologous chromosomes exchange information Inversion – when a section of chromosome is backwards Spermatogenesis – meiosis in males; makes sperm Oogenesis – meiosis in females; makes eggs Polar bodies – cells formed during meiosis in females that die, but provide a place to discard extra chromosomes Mendel and Heredity Heredity – the passing of traits from parent to offspring Genetics – the study of heredity Genes – sections of DNA that determine a person’s traits Dominant – takes over the recessive form of a gene Recessive – only shown when two recessive genes are present Alleles – versions of a trait Segregation – pairs of alleles are separated during meiosis Gamete – egg or sperm cell; sex cell Haploid – cell that has one chromosome from each homologous pair Diploid – cell that has two chromosomes from each homologous pair Independent assortment – during gamete formation, alleles separate independently of one another so long as they are on different chromosomes Linked genes – genes found on the same chromosome which are inherited together Genotype – the gene a person inherits Homozygous dominant – an individual inherits two dominant alleles Homozygous recessive – an individual inherits two recessive alleles Heterozygous – an individual inherits a dominant and a recessive allele Phenotype – the appearance of an individual Monohybrid cross – a cross involving 1 trait Punnett squares – a chart to show inheritance Probability – the odds of an event occurring Dihybrid cross – a cross involving two traits Codominance – when both alleles are fully expressed in an individual who is heterozygous; example AB blood type Incomplete dominance – when a heterozygous individual show a phenotype that is an intermediate form of the homozygous forms; ex: red x white = pink plants Sex-linked traits – traits that are carried on the X or Y chromosome Sex-influenced traits – traits that are affected by gender and expressed differently in males and females; baldness in males Evolution Part I Evolution – change in organisms over time Darwin – came up with theory to explain how species change over time Lyell – geologist who suggested earth changed due to geologic forces Malthus – suggested overpopulation would limit the human population size Lamarck – explained the long neck of the giraffe due to them stretching their necks Wallace – came up with a similar theory to Darwin’s Artificial selection – humans breed organisms for desired traits Natural selection – organisms with traits best suited to the environment survive and pass on their genes to the next generation Fitness – reproductive success Overproduction – more organisms are produced than can survive in the environment Variation – differences in organisms Selection – some organisms have variations that make them better suited to an environment Adaptation – organisms with traits better suited to the environment pass on their traits more frequently than others Stabilizing selection – the average phenotype is selected in an environment Directional selection – one extreme phenotype is selected in an environment Disruptive selection – 2 or more phenotypes are selected in the same environment Variations - differences in a population that play no role in fitness Adaptations – traits that all in a population have because they improve fitness Evolution – part II Fossils – remnants of past life Biogeography – distribution of plants and animals around the world Developmental biology – studying embryos Homologous structures – structures that develop from similar tissue but may not serve the same purpose Analogous structures – structures that serve the same purpose, but evolved independently of each other Vestigial structures – structures that serve no purpose in the present day organism, but may have been used in the past Biochemistry – DNA, proteins, amino acids shared among organisms Gene pool – all of the collective genes in a population Microevolution – changes in the allele frequencies of a population that do not lead to a new species Macroevolution – changes in populations that lead to the development of new species Speciation – development of a new species Species – groups of organisms that can interbreed and share a gene pool Reproductive isolation – organisms can no longer interbreed with one another Pre-mating reproductive isolation – mating is not attempted Post-mating reproductive isolation – organisms mate, but offspring is not viable or fertile Hybrids – created by crossing two different species together Natural selection – organisms with the traits best suited to the environment survive and pass the genes for those successful traits onto their offspring Migration – movement of organisms from one environment to another Mate choice – organisms select a mate based on certain criteria Mutation – changes in DNA code Genetic drift – allele frequencies change due to chance alone Founder effect – only a fraction of the gene pool is represented when a small subgroup breaks away from the main population Extinction – an entire species dies out Convergent evolution – unrelated species evolve similar traits as they adapt to the same environments Divergent evolution – 2 or more organisms become different as they adapt to different environments Adaptive radiation – a few migrate to a new area, then change as they adapt to a new environment Gradualism – change is slow and steady Punctuated equilibrium – period of no change followed by rapid speciation Coevolution – organisms change in close association with one another, like predator and prey Human evolution – not on Keystone exam Cell structure Magnification – increase in the apparent size of an organism Resolving power – the distance needed to distinguish two objects as separate Compound light microscope – uses light and glass lenses to look at living specimens Scanning electron microscope – beam of electrons bounces off of specimen to produce 3D image Transmission electron microscope – beam of electrons passes through a specimen to produce a flat image Organelles – structures that carry out specific functions inside a cell Eukaryotic cells – cells that have a nucleus and organelles Prokaryotic cells – cells lacking a nucleus and organelles Cell membrane (plasma membrane) – surrounds a cell and controls what enters and leaves a cell Cell wall – found in plant cells for additional support Cytoplasm – the area in a cell between the nucleus and cell membrane Cytosol – the fluid in the cytoplasm that surrounds the organelles Nucleus – controls all cell activities Chromatin – DNA and protein found in the nucleus of a cell Nucleolus – found in the nucleus; makes ribosomal RNA Nuclear membrane – surrounds the nucleus Nuclear pores – openings in the nuclear membrane that allow ribosomal RNA to leave and proteins to enter the nucleus Ribosomes – make proteins Rough ER – has ribosomes; aids in protein synthesis Smooth ER – lacks ribosomes; packages proteins and sends them to the golgi apparatus Golgi apparatus – modifies, sorts, and packages proteins for distribution Vacuoles – store materials in a cell Lysosomes – digests materials in a cell Chloroplasts – site of photosynthesis; makes glucose; only in plants Mitochondria – site of cellular respiration; makes ATP/energy Cytoskeleton – gives the cell shape and support/helps move materials around the cell Centrioles – only in animal cells; help with cell division Cilia – help with movement; small and numerous Flagella – help with movement; long and singular Unicellular organisms – contain only 1 cell Multicellular organisms – contain more than 1 cell Specialized – have certain jobs Colonial organisms – cells live connected as a group, but do not depend on one another for survival Tissue – distinct group of cells that have similar structure and functions Organs – a collection of tissues that carry out a specific function in the body Organ systems – made up of various organs that carry out a major body function Cells and their environment Cell membrane – surrounds the cell and controls what enters and leaves the cell Phospholipid bilayer – two layers of phospholipids that make up the cell membrane Fluid mosaic model – model used to describe the structure of the plasma membrane Polar head – water-loving end of a phospholipid Nonpolar tail – water-fearing end of a phospholipid Carbohydrate – allow cells to communicate with one another Cholesterol – strengthens the plasma membrane Proteins – allow large particles to cross the plasma membrane Selectively permeable – allows only certain materials to cross the membrane Passive transport – requires no cell energy, moving materials from high to low concentration Active transport – requires cell energy moving materials against their concentration gradient from low to high concentration Concentration gradient – a difference in concentration from one area to another Diffusion – the movement of molecules from high to low concentration Osmosis – the diffusion of water Facilitated diffusion – using proteins to move materials from high to low concentration Equilibrium – a state in which all materials are evenly concentrated Turgor pressure – makes plant rigid due to a high amount of water in the cell Exocytosis – vesicles expel materials from the cell by fusing the vesicle to the cell membrane Endocytosis – cell membrane wraps around a material forming a vesicle to bring the material into the cell Vesicles – tiny storage units Phagocytosis – form of endocytosis in which large particles are brought into a cell Pinocytosis – form of endocytosis in which small particles or liquids are brought into a cell Receptor-mediated endocytosis – form of endocytosis in which specific molecules are brought into a cell Enzymes and cell respiration Enzyme – speeds up the rate of a chemical reaction Substrate - molecule that reacts with enzyme Active site – region on an enzyme where a substrate attaches Energy of activation – the minimum amount of energy needed to start a reaction Induced fit model – a model used to describe enzyme function where the active site of the enzyme undergoes a slight change to fit with the substrate Denature – when an enzyme changes shape due to changes in temperature or pH Aerobic – with oxygen Anaerobic – without oxygen Cellular respiration – the process of making ATP from glucose and oxygen; gives off carbon dioxide and water in the process Glucose – the sugar that is converted into ATP Oxygen – a gas that helps convert glucose into ATP ATP - energy Water – a byproduct of cellular respiration Carbon dioxide – a byproduct of cellular respiration Glycolysis – the 1st phase of cellular respiration; makes ATP and NADH Transition reaction – the 2nd phase of aerobic cellular respiration; makes NADH and CO2 Citric acid cycle – the 3rd phase of aerobic cellular respiration; makes ATP, CO2, NADH, and FADH2 Electron transport system – the final phase of aerobic cellular respiration; makes ATP and water ATP – made of ADP + P; breaks down into ADP + P ADP – ADP + P – join to make ATP NAD+ - accepts H+ to become NADH NADH – loses H+ to become NAD+ FAD – accepts H+ to become FADH2 FADH2 – loses H+ to become FAD Mitochondria – location of cellular respiration Cristae – folds in the mitochondria; location of the electron transport system Matrix – fluid in the mitochondria; location of the transition reaction and the citric acid cycle Fermentation – follows glycolysis when no oxygen is available Photosynthesis Producers – organisms that make their own food through photosynthesis Consumers – organisms that eat other organisms for food Carbon dioxide – reduced to glucose during photosynthesis Water – split to produce oxygen during photosynthesis Glucose – end product of photosynthesis Oxygen – end product of photosynthesis Chloroplasts – site of photosynthesis Mesophyll cells – contain chloroplasts in a leaf Stomata – pores in a leaf to allow carbon dioxide in and oxygen out Stroma – fluid inside of a chloroplast Thylakoid – discs inside of chloroplast Grana – stacks of thylakoids inside of chloroplast Chlorophyll – the pigment in leaves that makes leaves appear green in the spring and summer Oxidation – loss of electrons Reduction – gain of electrons Light-dependent reactions – first set of reactions in photosynthesis which require the sun Light-independent reactions – second set of reactions in photosynthesis which do not require the sun Photosystem II – first step of light-dependent reactions; contain electrons that are energized when hit by the sun Photosystem I – electrons travel here after going through an electron transport system and are energized by the sun Calvin Cycle – the light-independent reactions that reduce carbon dioxide to glucose NADP+ - reduced to NADPH during the light-dependent reactions of photosynthesis NADPH – produced when NADP+ accepts hydrogen ions ATP – formed from ADP + P ADP – accepts P to form ATP Ecology Ecosystem – a community of organisms and their abiotic components Biotic – living components of an ecosystem Abiotic – nonliving components of an ecosystem Autotrophs – organisms that make their own food Heterotrophs – organisms that consume other organisms for food Herbivores – organisms that feed on plants Carnivores – organisms that feed on meat Omnivores – organisms that feed on plants and meat Decomposers – organisms that break down dead organic waste Primary consumer – organism that gets its energy from plants Secondary consumer – organism that gets its energy from primary consumers Tertiary consumer – carnivores that eat other carnivores Food chain – a diagram that links organisms together by who eats whom Food web – interconnected food chains Predation – interaction between two organisms in which one kills and eats the other Parasitism – interaction between two organisms in which one benefits while the other is harmed Symbiosis – a relationship in which two species live in close association with one another Commensalism – a symbiotic relationship in which one species benefits while the other is neither helped nor harmed Mutualism – a symbiotic relationship in which both species benefit Limiting factors – factors that can affect the size of a population Biotechnology DNA fingerprinting – involves separating the noncoding sequences of DNA using gel electrophoresis in order to observe the banding patterns that are unique to every individual Gel electrophoresis – an electric current is used to separate DNA fragments according to size Stem cell research – study of how stem cells (cells that can become any type of tissue) can be used to treat various conditions Cloning – making an exact copy of an existing organism Gene therapy – a technique to correct mutated genes that cause disease Human genome project – a project that mapped the sequence of DNA in humans and identified all human genes Genetic engineering – manipulating the DNA of one organism in order to insert the DNA of another organism