SUPPLEMENTARY METHODS Aeroponics system details and optimizations Materials used Each customized aeroponics system (Fig. 2a,b) was composed of six large 133 L (90 cm deep) black plastic barrels deep enough to allow roots to grow to a maximum of 45 days in the dark without twisting at the bottom. Since nutrient salts are corrosive, we used plastic pipes, fittings, pump impellers and tanks. An Epoxy-encapsulated feedback pump was chosen which had a mesh screen over the inlet to reduce debris intake. The main submersible pump distributing the nutrient solution to the sprinklers was made of a rugged thermoplastic body and a garden hose adapter to ease the connection with the main pipe. Black plastic pipes [1.5 cm outer diameter (OD)] were used for the main distribution line and feedback system. Drip tubes (6 mm outer diameter) were used to connect the main line to the sprinklers via pressure regulators which were chosen to match the flow rate of the microjets (98 litres per hour). Drip tubes were used at the bottom of each barrel to allow recycling of the nutrient solution to the feedback pipe. All building components were cleaned with antibacterial detergent and bleach; before the first usage, pipes were flushed with high pressure water to eliminate construction dust and microbes. Closed recirculating system It was critical to have a constant rate of refilling of the nutrient tank without solution accumulation at the bottom of each barrel. This was achieved through a combination of optimal feedback pipe diameters, gravity-return slope, pump flow rates and pressure regulation. The slope of the feedback pipe was optimized to maintain the flow rate of the feedback pump; in our case, a 2% slope was optimal for the feedback pipe. The pipe connecting the feedback pump to the nutrient tank was 50 cm long terminating 10 cm below the maximum height that the pump was capable of pushing liquid against gravity; this ensured constant pressurized feedback flow. Plant suspension design Our plant suspension system was designed to ensure uniform darkness inside the chamber verified by the fact that no root anthocyanin pigmentation was observed. The bottoms of 13.8 cm plants pots were cut at 5.8 cm from the top, and bottoms were replaced by nylon nets (0.6 cm x 0.3 cm) allowing roots to hang down from the top. Two 13.8 cm holes were cut per lid. The mesh size of the nylon net was chosen to hold the seeds and white aquarium stones, while allowing the crown roots to go through. When crown roots were blocked by too small a net mesh size (e.g. 0.2 cm x 0.2 cm), they split into multiple small-diameter branches below the net leading to artefacts. White aquarium stones were chosen to avoid nutrient accumulation in the crown region; in an earlier experiment, calcium phosphate and sulphate were observed to precipitate when we used Rockwool (Grodan®). Optimization of root misting In aeroponics, oxygen delivery is not a problem but delivering the nutrient solution to the roots homogeneously and at optimal time intervals are crucial. Nutrient delivery must be optimized for each genotype according to the root size and in some cases developmental stage. It is also critical to have uniform misting among barrels. This was achieved by matching the number of barrels with the pressure of the submersible pump (e.g. 6 barrels were chosen instead of more). Two microjets were used in each barrel, one flanking each of the two root systems. The flow rate at each microjet was measured to be 16.5 mL s-1 ± 0.8. In order to ensure that each root system was constantly moistened and to meet the plant transpiration demand at 30 days after planting, the frequency of misting was optimized. Various misting frequencies were tested (10 s, 20 s, 25 s, 30 s per minute, and continuous); 10 s of misting per minute was optimal. Another optimization parameter was the positioning of each microjet relative to each root. We found that the best spray uniformity was created by placing the microjets at the height equivalent to the bottom of the seed net, resulting in spraying roots from above. Sprinklers with a 5-20 micron droplet size and 180°C spraying pattern were cost effective, efficient and allowed uniformity. Using these optimized conditions, plants exhibited no signs of water stress, accumulation of salts on the root surface, and had low plant-to-plant variability. It is important to note that if plants failed to be misted for >15 min, for example due to a power failure, the roots were permanently damaged. Nutrient solution optimization The nutrient solutions were optimized for maize growth using aeroponics. We first chose Hoagland’s solution (Hoagland & Arnon, 1950) as a base as it has been empirically used in many maize nutritional studies using open semi hydroponic and closed hydroponic systems (Wang et al., 2005, Liu et al., 2008, Vamerali et al., 2003). Plant grown with Hoagland’s solution displayed symptoms of micronutrient deficiencies and potentially calcium deficiencies. To increase calcium, the original nitrate component was replaced by Ca(NO3)2 and NH4NO3, and to maintain the potassium concentration, KNO3 was replaced by KCl. A ratio of 75% nitrate: 25% ammonium ions was maintained in both high and low nitrogen nutrient solutions. The initial nutrient deficiencies observed in aeroponics compared to other soil-less techniques, may have been related to increased aerobic conditions in the rhizosphere which might increase root respiration and growth, creating greater ion demand and absorption (Jones, 1997). Indeed aeroponically-grown maize plants were large and grew fast. Rather than adjusting the micronutrient content of the original Hoagland’s solution, we supplemented with a commercial micronutrient mix. As iron deficiencies were observed, Fe-EDDHSA (Grabi chemical) was added after testing various chelating agents. Water quality was an important factor for pH management, to control ion concentrations and prevent algal growth. Filtered deionised water was used to prepare nutrient solutions which avoided contamination by various organic and inorganic chemicals. As pH is critical for nutrient uptake, it was measured daily and maintained in the 5.7-6.3 range using strong acids or bases; multiple chelators further buffered against changes in pH. Finally, the temperature of the nutrient solution was checked daily to ensure that the solutions were kept at ± 2°C from room temperature. Utilisation of black barrels as nutrient solution tanks in a greenhouse is not recommended as the nutrient solution temperature rose up to 5°C above room temperature in the summer. To avoid this temperature rise, the solution tank covered with a white plastic garbage bag. Nutrient solution replacement The need for individual nutrients and their uptake were expected to change dynamically throughout development. Unpredictable water loss (system leaks, evapotranspiration, seasonal variation) was expected to cause further variability in the nutrient solution concentration. To address these issues, the nutrient solution was initially monitored daily using Electrical Conductivity (EC) as a means to determine the renewal frequency. The EC was observed to be constant (2.8 µs/cm ± 0.4) for up to only 6 days when feeding twelve 30-day old plants. Hence, the nutrient solution was changed every six days even when plants were younger. However, EC measurements do not indicate which elements to replenish and at which concentrations. Furthermore, as our closed aeroponics system was constantly recirculating, the nutrient solution was expected to be altered by root decay and exudates, adding suspended precipitates, microorganisms and algae. To overcome all of these issues, we decided to replace the entire 100 L nutrient solution every 6 days throughout the experiment. Some growers consider filtering, ozone or UV treatments to prevent biotic contamination. However, these strategies are costly and labour intensive; keeping the nutrient solution in the dark, extensive cleaning of the system prior to start the experiment and short-term use of each nutrient solution helped cope with these problems.