Reviewer's report Title: The influence of ACE ID and ACTN3 R577X polymorphisms on lower-extremity function in older women in response to high-speed power training Version: 2 Date: 11 June 2013 Reviewer: Matthew J Delmonico Reviewer's report: Major Compulsory Revisions 1. While this study by itself seems to be well-conducted, with a valid rationale, I was wondering why these two phenotypes (S10 and GUG) were not included in your group’s prior publication that you referenced “[21]” in AGE journal (July 2012)? In that publication, it appears that you did the exact same type of analysis (i.e. effect of ACE and ACTN3 polymorphisms on muscle power phenotypes and a physical function phenotype – 30 s sit to stand test) with the same study. It seems clear that data on these phenotypes were collected during the course of that study given that it was an intervention study and these phenotypes would have fit well into that paper. I think that the similarities between the two papers (i.e. muscle and physical function phenotypes), while not identical in the phenotype data reported, might not be distinct enough for this new one to meet the minimum publishable unit threshold. Can you justify why this paper should stand alone and why these measures were not included in your previous publication? Thanks for your comments that greatly helped us to improve the overall quality of this article. These two phenotypes (S10 and GUG) were not included in our prior publication in AGE journal (July 2012) due to the extension of the training program and extensive discussion. Also because in the first one we tried to focus on muscular performance. Besides, after having performed all measures, observing what happened in the other variables,, it was intended to show that according to some critical points of view regarding the genetic association studies, this second article is purposely directly to discussion/ implications of capacity function in lower limbs, as a pertinent thematic that surely deserves this prominence. Furthermore, we focus the present article on the variables that best show the nature of gait speed and a mobility measure in older people and analyze their effect in ACE and ACTN3 polymorphism. According to the present revisions, we will try to clarify this sentence, as the Reviewer stated, readers would necessarily equate power phenotypes with walking velocity. 2. The last sentence of the Results section of the Abstract does not make sense to me. The Reviewer is absolutely right. As recommended, we rewrite the paragraph that may confuse readers. 3. Abstract Conclusion: It does not appear that your paper’s data support that these phenotypes are related to “exercise-related power phenotypes” as they are not part of this paper. Did you mean walking velocity? I don't think that most readers would necessarily equate power phenotypes with walking velocity. The Reviewer is absolutely right. As recommended, we rewrite the conclusion in abstract and removed the classification of power to gait speed phenotype and mobility trait. 4. Background. The second to last paragraph states that an aim is (using a genotype effect/ interaction) to predict disability or muscle weakness. This does not appear to be what your paper was about given that you did not have a clinically defined disability outcome (gait speed could be but your cohort is high functioning) or a muscle strength phenotype. You assessed gait speed and a mobility measure. I think that you stated your aim better in the first paragraph of the methods section. The Reviewer is absolutely right. As recommended, we rewrite the aim described in Background. We removed the term effect/ interaction to predict disability or muscle weakness taking to account the first paragraph of the methods section. 5. Background. I found the last paragraph to be confusing. The first sentence sounds like a specific aim, not a hypothesis. Thus, I only see one hypothesis. The last paragraph, second sentence should read “One of the hypotheses is...” – this assumes that you have more than one. Regarding this hypothesis, with complex phenotypes such as gait speed and GUG, how can you be certain that these are exclusively due to “a higher muscle phenotype effect” (I am not sure what you mean by that phrase) or some other factor (e.g. nervous system, comorbidities, medications, etc)? Finally, the last sentence should also read “...explain the interindividual...” The Reviewer is absolutely right. As recommended, we rewrite the last sentence explaining better our purpose in accordance to the revisions. 6. Methods – lower extremity function. The first sentence does not make sense to me. The Reviewer is absolutely right. As recommended, we rewrite the first description of the test. 7. Discussion: The first paragraph of the discussion needs to be re-worked to highlight the unique findings of the current investigation rather than the introduction-like feel that it currently has. Secondary findings should be in the second paragraph and please avoid re-stating results as done in the third paragraph. Additionally, a paragraph needs to be more than one sentence, so put paragraphs 6 and 7 somewhere else. The Reviewer is absolutely right. We rewrite the first paragraph of the discussion in order to highlight the unique finding of the current investigation. It was also add a second paragraph with secondary findings. We also avoid the results, and reduced all paragraph. We also change paragraphs 6 and 7 to paragraphs before. 8. Discussion: In your limitations section, you mentioned the need to include other muscle function measures. However, you previous paper had them. The Reviewer is absolutely right. As recommended, we rewrite the second limitation “Secondly, according to muscle function, these measures should be analyzed in older people with functional limitations to compare and observe if the training has the same effect in the present genotypes." 9. Discussion: In your last sentence of this section, you state that this “...study confirms the importance of identifying individuals vulnerable to the effects of aging and thus exposed to a greater decline in muscle function.” You study was not an “aging” study as it did not study the effects of aging, only the effect of a 12 wk intervention. The Reviewer is absolutely right. As recommended, we removed term aging and rewrite the final sentence: “…the effects of a 12 week intervention in gait speed and mobility in older people.” Minor Essential Revisions 1. Abstract and Methods: “One hundred and thirty-nine” should be replaced with “One hundred thirty-nine” The Reviewer is absolutely right. As recommended we corrected the number. 2. Background: The third sentence states that “Recently, two systematic reviews [1, 5]...” Ref 1 is a 2001 article. Should this be considered “recent”? The Reviewer is absolutely right. We removed the term recently. 3. Discussion. Paragraph 8 is long and should be broken up into two paragraphs. The Reviewer is absolutely right. As recommended we had broken the paragraph into two paragraphs. Discretionary Revisions - none Level of interest: An article of limited interest Quality of written English: Needs some language corrections before being published Statistical review: No, the manuscript does not need to be seen by a statistician. Declaration of competing interests: I declare that I have no competing interests Reviewer's report #2 Title: The influence of ACE ID and ACTN3 R577X polymorphisms on lower-extremity function in older women in response to high-speed power training Version: 2 Date: 16 June 2013 Reviewer: Joseph Devaney Reviewer's report: Major Compulsory Revisions Is there a description of the results of the study without accounting for ACTN3 genotype? This publication should be cited. Were there any non-responders? First, thanks for your comments that greatly helped us to improve the overall quality of this article. We don’t have results of the present study without accounting for ACTN3. Because the purpose was to analyze both genotypes (single and combined). P-values need numerical value for the training effects. The Reviewer is absolutely right. We add numerical values (P=0.001). The discussion needs to add more biology behind the results. The discussion reads more like a results section. The Reviewer is absolutely right. We add and rewrite some biology facts behind the results. And rewrite the exposition of the results. For example, the sentence "Compared to the ACTN3 R577X polymorphism, a significant interaction for genotype training was also evident only in S10 and not in the GUG test (P=0.044 and P=0.477, respectively)" is in the discussion but is not expanded to include any biological reason for the results. The Reviewer is absolutely right. According to the revision in this topic, the discussion was improved. Statements like "On performing this experiment, older women tend to focus on maintaining balance in rising from the chair and may disregard high velocity execution. Also might be that the posture control (i.e. sensorial system) play a major role in it." Is there any data that has been collected or publications that can be used to verify these statements? The Reviewer is absolutely right. According to Davids, K., P. Glazier, et al. (2003). "Movement systems as dynamical systems: the functional role of variability and its implications for sports medicine." Sports Med 33(4): 245-260, it is pertinent this analysis and also as we affirm, balance and coordination might are specific capacities that can predict some difference between the subjects. Coordination reporting is an alternative approach for interpreting the inter-individual in motor behaviour during each unique performance. Genetic studies and training seems to be the best way to show where this variation is highlighted. Their interaction is still to be verified but we think that new studies and in the future research area may supporting physical performance and other complex phenotypes. The statement "It seems that #-actinin-3 expression may affect muscular capacity, which implies that #-actinin-2 may compensate for this deficiency and neutralize the phenotypic consequences at baseline". What does the term baseline signify? Baseline is an initial value of the measurements, that can be used to compare past, current and projected future values and it’s used as a basis for comparison. It’s a reference point against which other measures can be evaluated. The baseline can be considered the starting point against which all future values are measured. This statement needs to be removed "Our study was also able to show how the ACTN3 protein makes functional contributions to muscular power...". The paper does not show any protein work or cite any protein work. The Reviewer is absolutely right. As recommended we removed the statement. Minor Essential Revisions The should be more specifics about the Inclusion criteria. The term "older" needs to be defined. What if there were marathon runners? This is a type of exercise training and may have an effect on response to RT. The Reviewer is absolutely right. Based on age range we used “older” instead of elderly because the average age of our participants was 64 (in the end of the spectrum). We adjusted the terms accordingly to this age range: middle aged is consider 30-40 years, old 55-65 years and elderly 75 and up. However, the problem is that chronological age does not correlate perfectly with functional age, i.e. two people may be of the same age, but differ in their mental and physical capacities. According to scientific research in sport science and gerontology, we followed the purpose of Häkkinen et al. (1998), once they used in their study, women (W) divided into two age groups, i.e., middle age: W40 (39±3) and older: W70 (67±3). Häkkinen et al. (1997) used 10 older (O) men (61 +/- 4 yrs) and denominated 12 elderly women (68 +/- 4 yrs; W70). Besides, Henwood et al. (2008) used 38 healthy independent older adults (65-84 years) so, as the subjects of our study are not oldest ut the mean ± SD ages are 64 plus 65 years, we believe that our results may be applied to the elderly population in general. We tried to be consistent and use older term. The description of the allele frequencies needs to include a reference to hapmap or 1000 genome project. As recommended we added the reference according to: “Wood, A. R., J. R. Perry, et al. (2013). "Imputation of Variants from the 1000 Genomes Project Modestly Improves Known Associations and Can Identify Low-frequency Variant - Phenotype Associations Undetected by HapMap Based Imputation." PLoS One 8(5): e64343.” We also corrected all references in general. The sentence in the discussion that starts.."For that reason, it would be relevant in the older women, identifying genotypes associated with functional capacity declines..." needs to be rewritten. The Reviewer is absolutely right. As recommended we rewrite the sentence in the discussion. Level of interest: An article whose findings are important to those with closely related research interests Quality of written English: Acceptable Statistical review: Yes, but I do not feel adequately qualified to assess the statistics. Declaration of competing interests: I declare that I have no competing interests