Supplementary Information for Young Jin Lee et al., “High-throughput Analysis of Algal Crude Oils using High-resolution Mass Spectrometry” 4.20x10 C16 TAG + K 845.7002 7 ESI C16 TAG + Na 829.7297 0.00 1.40x10 C16 DAG Fragment 551.5025 9 APCI Signal intensity E 379.3328 S 411.3976 0.00 3.0x10 9 E 379.3328 E 396.3367 S 410.3878 C16 DAG Fragment 551.5025 APPI 0.0 400 3.0x10 600 800 5 E 396.3383 C16 TAG + Na 829.7252 MALDI 0.0 400 600 800 m/z Supplementary Figure 1. Orbitrap MS spectra of simulated algal solution ionized with ESI, APCI, APPI, and MALDI. Most ions are detected as protonated (APCI) or free radicals (APPI), except potassium or sodium ion adducts for TAG in ESI and MALDI. Ergosterol (E) is detected as a water-loss or free radical, [M-H2O+H]+ or [M]. Squalene (S) is detected as protonated or free radical, [M+H]+ or [M]. 9.4E+08 1.2E+09 Cholesterol 0.0E+00 0.0000 R² = 0.975 0.0050 0.0100 0.0150 0.0200 DAGs R² = 0.9854 0.0E+00 0.0250 0 0.005 % of solix Algae Oil 4.9E+07 2.0E+09 R² = 0.9558 0.005 0.010 0.015 0.020 0 0.005 1.0E+09 R² = 0.982 0.01 0.015 % of solix Algae Oil 0.01 0.015 0.02 0.025 % of solix Algae Oil 0.0E+00 0.005 0.025 R² = 0.986 0.0E+00 0.025 Squalene 0 0.02 TAGs % of solix Algae Oil 1.8E+07 0.015 % of solix Algae Oil Ergosterol 0.0E+00 0.000 0.01 0.02 0.025 Chlorophyll A R² = 0.9968 0.0E+00 0 0.005 0.01 0.015 0.02 % of solix Algae Oil Supplementary Figure 2. Ion signals for each lipid class at various algal oil concentrations. 0.025 Supplementary Table 1. MS/MS and MS3 of some TAG. Precursor Assignment MS/MS and MS3 peak assignment Mass 775.68 C16:1/C16:1/C14:0 757.6 (-H2O), 547.5 (-R(C14:0)COOH), 521.5 (-R(C16:1)COOH) 777.70 C16:0/C16:1/C14:0 759.8 (-H2O), 549.6 (-R(C14:0)COOH), 523.6 (-R(C16:1)COOH) 799.68 C14:0/C16:0/C18:4 781.5 (-H2O), 571.6 (-R(C14:0)COOH), 543.4 (-R(C16:0)COOH) 801.70 C14:0/C16:1/C18:2 783.8 (-H2O), 573.6 (-R(C14:0)COOH), 547.6 (-R(C16:1)COOH) 803.71 C14:0/C18:2/C16:0 575.5 (-R(C14:0)COOH), 547.4 (-R(C16:0)COOH) 805.73 C16:0/C16:0/C16:1 787.8 (-H2O), 551.5 (-R(C16:1)COOH), 549.6 (-R(C16:0)COOH) 823.68 C20:5/C16:1/C14:0 805.6 (-H2O), 595.4 (-R(C14:0)COOH: 267.3(RCO-H2O; C20:5), 285.3(RCO+; C20:5), 311.3(RCOO+58; C16:1), 569.4 (-R(C16:1)COOH), 827.71 C18:3/C16:0/C16:1 809.6 (-H2O), 571.4 (-R(C16:0)COOH), 549.3 (-R(C18:3)COOH) 829.73 C18:3/C16:0/C16:0 811.8 (-H2O), 573.6 (-R(C16:0)COOH), 551.4 (-R(C18:3)COOH) 831.75 C16:0/C16:1/C18:1 813.6 (-H2O), 575.5 (-R(C16:0)COOH), 549.5 [-R(C18:1)COOH: 219.2(RCO-H2O; C16:1), 237.2 (RCO; C16:1), 551.4 (-R(C16:1)COOH+H2O), 521.4 [-R(C20:5)COOH: 211.1(RCO; C14:0), 219.2(RCO-H2O; C16:1), 237.3(RCO; C16:1)] 293.2(RCOO+58-H2O; C16:1), 313.3 (RCOO+58; C16:0)] 849.70 C20:5/C16:1/C16:1 831.7 (-H2O), 595.5 [-R(C16:1)COOH: 267.2(RCO-H2O; C20:5), 285.3(RCO+; C20:5), 311.3(RCOO+58; C16:1)], 547.5 [-R(C20:5)COOH: 219.3(RCO-H2O; C16:1), 237.2(RCO+; C16:1), 293.3(RCOO+58-H2O; C16:1), 311.3(RCOO+58; C16:1)] 851.71 C20:5/C16:1/C16:0 833.7 (-H2O), 595.5 [-R(C16:0)COOH: 267.2(RCO-H2O; C20:5), 285.3(RCO+; C20:5), 311.3(RCOO+58; C16:1)] 549.5 [-R(C20:5)COOH: 219.3(RCO-H2O; C16:1), 237.2 (RCO; C16:1), 293.3(RCOO+58-H2O; C16:1), 313.3 (RCOO+58; C16:0)] 853.73 C20:4/C16:1/C16:1 835.8 (-H2O), 599.6 (-R(C16:1)COOH), 597.5 (-R(C16:0)COOH), 549.6 (-R(C20:4)COOH) 875.73 C20:4/C16:1/C18:3 857.8 (-H2O), 621.6 (-R(C16:1)COOH), 597.3 (-R(C18:3)COOH) 877.73 C20:5/C18:1/C16:1 859.6 (-H2O), 623.4 [-R(C16:1)COOH: 267.2(RCO-H2O; C20:5), 285.3 (RCO; C20:5), 339.3 (RCOO+58; C18:1)] 595.4 [-R(C18:1)COOH: 267.3(RCO-H2O; C20:5), 285.3(RCO; C20:5), 311.3 (RCOO+58; C16:1)], 575.50 [-R(C20:5)COOH: 237.3(RCO; C16:1), 247.3(RCO-H2O; C18:1), 265.3 (RCO; C18:1), 311.3 (RCOO+58; C16:1), 339.3 (RCOO+58; C18:1)] 879.75 C20:5/C18:1/C16:0 861.9 (-H2O), 623.6(-R(C16:0)COOH), 597.6 (-R(C18:1)COOH), 577.6 (-R(C20:5)COOH) 897.70 C20:5/C20:5/C16:1 879.6 (-H2O), 643.4 (-R(C16:1)COOH), 595.4 (-R(C20:5)COOH) 899.71 C20:5/C20:5/C16:0 881.6 (-H2O), 643.4 (-R(C16:0)COOH), 597.4 [-R(C20:5)COOH: 267.3(RCO-H2O; C20:5), 285.3(RCO; C20:5), 945.71 C20:5/C20:5/C20:5 927.7 (-H2O), 643.5 (-R(C20:5)COOH) 313.3 (RCOO+58; C16:0), 341.3 (RCOO+58-H2O; C20:5)] * When MS3 is acquired, its information is given in []. Supplementary information for cholesterol quantification using GC-MS. To verify cholesterol amount in algal crude oils using an alternative method, a simple one-point quantification was made using GC-MS. Namely, as described in the experimental section, algal crude is silyated and diluted with toluene. One microliter of the final solution (0.04% v/v of the original oil) is subjected to GC-MS analysis along with cholesterol standard (final concentration of 20μM after silyation and toluene dilution). Below is GC-MS chromatogram of algal oil and cholesterol standard. Cholesterol peak appears at the retention time of 18.4min and NIST database search gave an excellent score of 936 and 938 forward and reverse match score as shown in Supplementary Figure 4. Four replicate of algal oil and three replicate of cholesterol standard were run, of which the result is summarized in Supplementary Table 2. The ratio of cholesterol peak area between algal oil and standard is 2.56 (rsd=4.3%). Accordingly, the cholesterol amount in the original sample is calculated as 128mM (=2.56 x 20μM / 0.04%). Supplementary Figure 3. GC-MS chromatograms of algal crude oil (Top) and cholesterol standard (bottom). Supplementary Figure 4. NIST MS database search of GC-MS spectrum of algal crude oil at Rt=18.4min. Supplementary Table 2. Summary of GC-MS analysis of cholesterol peak at Rt=18.4 min. Std #1 Std #2 Std #3 Algal crude #1 Algal crude #2 Algal crude #3 Algal crude #4 Peak Area 7.27E+08 7.22E+08 7.00E+08 1.73E+09 1.86E+09 1.88E+09 1.85E+09 Average Std dev 7.16E+08 1.45E+07 Average Std dev 1.83E+09 6.90E+07