ORF GO Motif Template in PDB PSIBLAST STRING Docking results

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ORF GO

10

11

18

23

Redox enzyme;

Methanol catabolic process;

Cell adhesion

Protein binding and targeting to nucleus;

Intracellular protein transport;

Cytoplasmic;

RNA binding through forming protein complex

Catalytic protein that resides in cytoplasm;

Metal ion binding extracellular protein;

Protein binding;

Carbohydrate metabolic process;

Membrane bound;

Motif

Enzymatic: acetyl neuraminidase;

Receptor guanylyl cyclase;

Protein binding activity

Pneumovirus attachment glycoprotein G;

Herpesvirus dUTPase;

Neucleopeptide FF receptor

Template in

PDB

PSIBLAST STRING

dUTPase

Docking results

Neuraminidase complex with galactose; Apo dUTPase, binds neuropeptides and activates them

Herpesvirus dUTPase;

CYP2E p450 signature;

Ig-MHC signature;

Poxvirus coat protein

VP1

Porin opacity transport;

Heat labile enterotoxin

B-chain (membrane translocation);

Poxvirus coat protein

VP1 N terminal

(transportation inside neucleus);

Influenza matrix protein M1with membrane and RNA binding ability dUTPase;

Ethanol dehydrogenase

Mitochondrial regulator MTERF, works during replication and forms complex with dsDNA;

Nuclear import and dissociation through RanGTP like mechanism;

Neuclear export

DNA binding

Herpes virus

UL79 like;

PSIBLAST result shows homologous to

UDP epimerase;

RNA biogenesis pathway;

Transcription factor activity homologous to

UDP epimerase

DNA binding groove discovered

24 Metal ion binding;

Catalytic;

Protein bindng;

Redox activity;

P2Y2 signature motif responsible for nucleotide binding;

Somatostatin/

Proteolytic activation;

Deamination/ decarboxylation;

Extra Comments

dUTPase;

Neuraminidase activity;

Receptor;

Prottein binding

NCBI CDD showed homology with

EBV LF2 protein dUTPase

Redox reaction;

Cell adhesion and recognition;

DNA BindR and

BindN showed potential RNA binding region;

Initiates a feedback loop

Transport protein

DNA BindR and

BindN showed potential RNA binding region;

TMHMM and

Kyte Dolittle similar to EBV capsid (BCLF1);

CDD showed homology with

Herpes Virus

BTRF1

CDD showed homology with

EBV BCRF1

Capsid protein

ATP binding;

Transport;

Catalysis (?);

27

28

30

31

Carbon metabolism

Hydrolase;

Metal ion binding;

Megatve regulator of inflammatory response

(IL);

Acid phosphatase activity

Protein binding intracellularly;

RNA metabolic process

Protein binding and proteolysis;

DNA binding and transcription;

Regulation of apoptosis

ATP binding;

Cortistatin motif responsible for carbohydrate metabolism;

Coactivator CBP,

PKID responsible for protein binding;

UPTII

(ribonucleoprotein) responsible for nucleotide binding

Tram responsible for ssDNA cleavage;

Neurohypophysial hormone responsible for muscle contraction;

Cleaved adhesion responsible for peptide binding;

BDLF2 like domain responsible for protein trafficking

Envgp36 protein

(HERV/ MMTV) responsible for transmembrane helix;

Dishevelled protein responsible for binding;

Coronavirus protein 7 responsible for protein assembly

Core binding factor, beta subunit responsible for transcription factor and

DNA binding;

Paramyxovirus nonstructural protein C responsible for RNA synthesis;

ROK responsible for

DNA binding

Herpes virus UL92

Clathrin adaptor complex;

GTP binding and nuclear import

Acid phosphatase and metal ion binding

Transmembrane and cytoplasmic domain of human

CD4 characteristic to HCMV UL16-

MICB complex. It causes viral immunoevasion to

NKG2D ligand

Pyogenicity immunoprotein;

RNA pol core binding domain of sigma;

TNFR related death receptor 6 having C terminal

CARD like domain

Galactokinase; EBV BGLF 4 NAD-

TMHMM reaults showed its extracellular

Catalytic;

Neuroregulatory secretory protein

TMHMM shows they are transmembrane

Transmembrane;

Glycoprotein envelop protein

Apoptosis related DNA binding protein;

Transcription factor

TMHMM shows Catalytic;

Kinase activity;

Phosphotransferase activity domain Phosphatase like domain like protein dependent oxidoreductase

33 Oxidoreductase

(quinine as receptor)

Herpes virus UL16 domain/ UL94;

Enzymatic

34

35

42

49

ATP binding and phosphorylation

UL95 family domain;

DNA binding;

Apical membrane 1 signature with hydrophobic domain for envelop;

Oxoisovalerate

(structurally similar to

ATP) dehydrogenase activity

ROK DNA binding;

Paramyxovirus non structural protein C

Enzymatic activity

TetR/CamR family response

EBV BGLF3 like protein

DNA binding and regulation of transcription;

Protein binding and negative regulation of transcription;

Homodimerization activity

Same as 35

Protein binding and protein transport;

RNA binding forming

Herpes virus UL7 like protein;

Transmembrane protein

ROK DNA binding motif;

Dsh in various GTPase

Same as 35

Nuclear import complex by

RanGTP Exportin5

BRRF1 that induces lytic cycle by Traf 2 extracellular localization;

CDD showed homology with

BGLF4;

BGLF4 secretes

IFN3 regulatory factor that causes

IFB3 pathway to downregulate

UL16 interact with UL11 and

UL21 which causes efficient packing;

UL94 is Herpes virus capsid/tegument protein

UL 95 family has enzymatic activity and causes major early gene expression and

DNA replication;

Immunosuppression

Tegument protein

DNA binding tegument protein;

Dehydrogenase activity

Paramyxovirus non structural protein C has both positive and negative effect on mRNA synthesis

DNA binding/

Transcription factor

TMHMM results show transmembrane localization

DNA binding/

Transcription factor

Transcription factor

52

53

55 protein complex

Dehydrogenase activity;

FAD binding for defence response;

Receptor binding

Metal ion binding;

Protein binding;

Redox reaction

DNA binding;

Protein binding for DA replication;

Protein homodimer and important for protein protein interaction;

Influenza matrix protein which has both positive and negative effect on mRNA biosynthesis.

ROK DNA binding;

Dsh for DNA binding;

Pneumovirus nucleocapsid for protein binding;

Aphid transmission protein; bZIP transcription factor

UL73 envelop glycoprotein;

ROK DNA binding;

HTLV tax transcription activator

Pneumovirus nucleocapsid for protein binding;

Paramyxovirus non structural protein C by forming

RanGTP miRNA complex and p53 dependent manner

Tegument protein ORF52 of murine γ-

Herpes virus;

BLRF2 causes

Rta responsive gene transcription

Rrfr family transcription regulation

TetR family

Immediate lytic cycle;

Transcription factor

Glycoprotien;

Transcription factor

Paramyxovirus non structural protein C has both positive and negative effect on mRNA synthesis

Transcription factor

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