Final 2004.6.22 (Written) 1. (30%) Suppose we have the following data for the survival times of ovarian cancer patients: Subject Survival Censor time indicator 13 1 52 0 6 1 40 1 10 1 7 0 66 1 I II III IV V VI VII Sex Age BUN 1 1 2 1 1 2 1 66 66 53 69 65 57 52 25 13 15 10 20 12 21 (a) Calculate the Kaplan-Meier estimate for the data. (b) Fit the above data by the Weibull distribution with density function f t 2t exp t 2 . Find the MLE of and find the estimated survival function. (c) Suppose the variables Sex, Age, and BUN are the variables of interest. Using proportional hazards model, derive the partial likelihood and describe how to obtain the partial likelihood estimate. 2. (30%) (a) Suppose Y1 ~ P1 and Y2 ~ P2 and we are interested in the ratio 1 . Please find the conditional likelihood estimate. 2 (b) Suppose that 1 , 2 ,, n are independent and identically distributed with density f , depending on the unknown parameter . Suppose 1 also that the observed values y1 , y 2 ,, y n satisfy 1 Y X Zr , for fixed known matrices X , Z and unknown parameters , r . Show that the distribution of R I PY does not depend on , where P X XtX 1 Xt. 3. (20%) Suppose the independent data Y1 , Y2 ,, Yn have the mean i and the variance function. Vi i 3 (a) If i , Vi , find the quasi-likelihood function and maximized quasi-likelihood estimate for . (b) Suppose i xi , Vi i i , where is a single parameter. Find the quasi-score function and the estimate based on the quasi-score function. (Computer) 1. (30%) For the following data, Patient Time Cens 281 1 1 604 0 2 457 1 3 384 1 4 341 0 5 842 1 6 1514 1 7 182 0 8 1121 1 9 1411 0 10 814 1 11 Treat 0 0 0 0 0 0 1 1 1 1 1 2 Age 46 57 56 65 73 64 69 62 71 69 77 LBR 3.2 3.1 2.2 3.9 2.8 2.4 2.4 2.4 2.5 2.3 3.8 1071 1 1 58 3.1 12 Cens: censor indicator; Treat: treatment. (a) Calculate the Kaplan-Meier estimates for two treatment groups and plot the survival functions in the same Figure. (b) Test the treatment effect using log-rank test and Wilcoxon test. (c) Fit the following proportional hazards models t 0 t exp and comment on the results, Treat 1 Age 2 LBR 1 Age 2 LBR 12 Age LBR 2. (40%)The following data concern a type of damage caused by waves to the forward section of certain cargo-carrying vessels: Ship Year of Period of Aggregate Number of type construction operation months service damage incidents 1960-64 1960-74 127 0 A 1960-64 1975-79 63 0 A 1965-69 1960-74 1095 3 A 1965-69 1975-79 1095 4 A 1970-74 1960-74 1512 6 A 1970-74 1975-79 3353 18 A 0 1975-79 1960-74 0 A 1975-79 1975-79 2244 11 A 1960-64 1960-74 45 0 B 0 1960-64 1975-79 0 B 1965-69 1960-74 789 7 B 1965-69 1975-79 437 7 B 1970-74 1960-74 1157 5 B 1970-74 1975-79 2161 12 B 0 1975-79 1960-74 0 B 1975-79 1975-79 542 1 B 1960-64 1960-74 1179 1 C 1960-64 1975-79 552 1 C 3 1965-69 1960-74 781 C 1965-69 1975-79 676 C 1970-74 1960-74 783 C 1970-74 1975-79 1948 C 1975-79 1960-74 0 C 1975-79 1975-79 274 C *: Necessarily empty cells, **: Accidentally empty cell 0 1 6 2 0 1 (a) Fit the log-linear model for the response the number of damage incidents, with qualitative factors, Ship type, Year of construction, Period of operation and quantitative variate Aggregate months service as offset. What are the conclusions? (b) Please fit the above data based on quasi-likelihood approach. 4