LUMC: Human and Clinical Genetics / Leiden Genome Technology Center
Introduction to NGS Data Analysis
May 22, 2014
Location: LUMC, Leiden
Given by: Michiel van Galen, Martijn Vermaat, Jeroen Frank and Jeroen Laros.
The course aims at introducing participants (with no or little experience) to NGS data analysis. In the
morning we introduce general data analysis techniques, like alignment and de novo assembly. In the afternoon
we discuss some applications and good research practices.
Program:
09:00 - 09:30
09:30 - 10:00
10:00 - 10:30
Introduction
Quality control
Alignment
10:30 - 11:00
Break
11:00 - 11:30
11:30 - 12:00
Variant calling
De novo assembly
12:00 - 13:00
Lunch
13:00 - 13:30
13:30 - 14:00
14:00 - 14:30
14:30 - 15:00
Phylogenetic reconstruction
Plasmid and gene profiling
Good research practices for data analysis
Discussion
Jeroen Laros
Michiel van Galen
Martijn Vermaat
Martijn Vermaat
Jeroen Frank
Michiel van Galen
Jeroen Laros
Michiel van Galen