Electronic Supplementary Material 3 . Summary of the QTL detected for each analyzed trait, determined by IM without MD as covariate.
Trait
Year
LG
C-if
2009
2010
4
nd
SK-rd
2009
4
2010
SK-if
2009
2010
FL-rd
FL-if
MD
Kruskal-Wallis
Marker (Genomic Position)*
min p value
UDP97-402 (Sc4:10,486,180)
nd
<0.005
<0.005
2
UDP97-402 (Sc4:10,486,180)
M1a (Sc2:18,412,523)
4
M12a (Sc4:9,208,608)
<0.001
2
M1a (Sc2:18,412,523)
<0.01
4
EPPISF032 (Sc4:12,769,735)
<0.001
2
UDP96-013 (Sc2:18,895,940)
<0.001
4
M12a (Sc4:9,208,608)
<0.005
2
M1a (Sc2:18,412,523)
<0.001
2009
4
2010
4
UDP97-402 (Sc4:10,486,180)
EPPISF032 (Sc4:12,769,735)
2009
4
EPPISF032 (Sc4:12,769,735)
2010
4
2009
4
2010
4
EPPCU1106 (Sc4:9,586,223)
UDP97-402 (Sc4:10,486,180)
UDP97-402 (Sc4:10,486,180)
Permutation
Test
Genomewide
threshold for
p<0,05
Interval Mapping
LOD peak / R2 (%)
LOD peak
Associated marker (Genomic
position (cM) Position)*
2.6
2.8
2.82 / 20.0
nd
41.89
nd
3.4
4.6 / 28.7
49.37
2.28 / 16.4 ns
58.50
UDP97-402 (Sc4:10,486,180)
UDP96-013 (Sc2:18,895,940)
3.16 / 17.8
39.19
M12a (Sc4:9,208,608)
3.17 / 17.9
50.50
M1a (Sc2:18,412,523)
3.42 / 23.8
56.81
EPPISF032 (Sc4:12,769,735)
4.83 / 31.8
57.50
UDP96-013 (Sc2:18,895,940)
4.24 / 23.2
38.61
M12a (Sc4:9,208,608)
M1a (Sc2:18,412,523)
<0.05
3.0
3.3
3.1
EPPCU1106 (Sc4:9,586,223)
nd
3.24 / 18.3
49.3
<0.001
3.6
3.94 / 29.5
51.38
<0.05
3.4
3.67 / 23.8
57.72
UDP97-402 (Sc4:10,486,180)
EPPISF032 (Sc4:12,769,735)
<0.05
3.8
nd
nd
nd
<0.001
3.2
3.83 / 24.8
57.72
EPPISF032 (Sc4:12,769,735)
<0.0001
3.8
11.1 / 58.2
45.82
<0.0001
3.8
16.57 / 64.8
50.38
UDP97-402 (Sc4:10,486,180)
UDP97-402 (Sc4:10,486,180)
* Genomic position were reported as Scaffold (Sc) number: position in bp.
ns - QTL considered as not significant (lower LOD value than the threshold)
nd – no QTL detected for the trait
QTLs detected in both seasons in overlapping regions in underlined bold.
QTL mapping for brown rot (Monilinia fructigena) resistance in an intra-specific peach (Prunus persica L. Batsch) F1 progeny. Tree Genetics and Genomics.
Igor Pacheco, Daniele Bassi, Iban Eduardo, Raul Pirona, Laura Rossini and Alberto Vecchietti. Dipartimento di Scienze Agrarie e Ambientali - Produzione,
Territorio, Agroenergia, Università degli Studi di Milano, via Celoria 2, 20133 Milan, Italy; Parco Tecnologico Padano, via Einstein, Loc. Cascina Codazza,
26900 Lodi, Italy. igor.pacheco@unimi.it