6.12 Class PPT Biodiversity lab day 2

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Biodiversity Lab: Day 2 Molecular

Evidence

Ms. Blalock, Ms. Hartsell and Mr.

Luckman

Do Now

• What are some techniques that you can use to determine if two species are similar?

AIM

• How can we use molecular evidence to determine the relationships between species?

Agenda

• Do Now

• INM: Paper Chromatography

• Test 1: Paper Chromatography

• Test 2: Indication Test for Enzyme M

• Test 3: Translating DNA

• Exit Ticket

Molecular Evidence

• Yesterday in lab, we used structural evidence to determine the similarities between Botana curus and three other unknown Species X, Y and Z

Today in lab, we will be using molecular evidence to determine which of the Species (X, Y or Z) is most similar to Botana curus.

• Molecular evidence just refers to looking at the similarities and differences of different species based on the molecules (pigments, proteins, DNA) that make up each of the species.

• We will be performing three different tests to collect this molecular evidence

– Paper Chromatography

– Indication Test for Enzyme M

– Translating DNA into amino acids

Making observations

• Observations will play a key role in collecting molecular evidence.

• Specifically, in the Paper Chromatography and Enzyme M tests, observations will be made and recorded about the nature of the reactions that occur.

INM: What is paper chromatography?

• Paper chromatography is a procedure used to separate substances in a mixture.

• In this lab, this mixture is a solution of liquid pigments containing different kinds of chlorophyll

– It is referred to as “ plant extract ”

Turn and Talk

• What is the importance of chlorophyll to a plant?

Separation of pigments

• The different chlorophyll and other photosynthetic pigments separate out into patterns called “bands”

• These bands are made up of different colors.

How does it work?

Each of the green dots (A, B, C and D) represent plant extract each being from a different species of plant.

What do the results tell you?

• Plant species that are genetically similar will have similar colors and banding patterns.

Test 1: Paper Chromatography

Directions: Using the procedure and PowerPoint titled “ Chromatography”, go through the process of paper chromatography.

Purpose: To determine which Species (X, Y or Z) has similar colors and banding patterns as Botana

curus.

Task: Complete steps 1-7 for the next 15 minutes

Indication Test of enzyme M

Botana curus is a plant that produces curol, which is a compound used to treat certain kinds of cancer.

There exists no good tests to indicate the presence of curol in plants.

However, if a plant produces the enzyme called “enzyme

M”, this is a good indication that the plant also produces curol

Presence of enzyme M = presence of curol

What happens if enzyme M is present?

• Just like iodine is an indicator for starch, there exists an indicator for enzyme M.

• When this indicator comes into contact with a substance that contains enzyme M, the solution will “fizz” or bubble up.

• This means that if enzyme M is NOT present then there will be no reaction

– In other words, nothing will happen

Making connections (3 min)

How do you predict the plant extract from

Botana curus will react with the enzyme M indicator? Provide reasoning for your response

• Return to the second page of your guided notes to answer this question.

Test 2: Indication of enzyme M

Directions: Following the instructions in your procedure packet, determine which species

(X, Y or Z) contains enzyme M

Data: Once you have completed the test, record answers in Table 1 under “Indication of enzyme M” column

• You will have 12 minutes to complete this test.

Test 3: Translating DNA

Directions: Following the instructions in your procedure packet, determine which Species (X, Y or Z) contains the most similar amino acid sequence to Botana curus.

Data: Record results in Table 1 under “

Translating DNA”

Time: You will have 10 minutes to complete this test.

Exit Ticket

Finish Early?

• Which of the molecular tests ran today do you think is the most accurate at determining relationships between species?

• Provide reasoning for your response.

Finish early?

• What was the reasoning behind testing each species for enzyme M?

• How did you know if enzyme M was present?

Finish Early?

• How does knowing the amino acid sequence help determine the relationship between species?

• Explain the relationship between a gene and a protein.

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