OpenLogistica
A Sample Tracking Add-on to OpenClinica
Jonathan Babbage
Clinical & Translational Sciences Institute
Biomedical Research Informatics Core
6/21/2013
OpenClinica Global Conference
Who we are
Tools
Skills
Services
Clients
•Clinical Research
Management
Systems
•Document
Management
•I2B2
•Development
•Data Management
•Study Design
•Hourly Rates
•Percent Effort
•Co-Investigator
•CDC
•Ohio National
Guard
•Epidemiology
•Osteopathic
Medicine
•Education
Homebrew
Journey
Where we are going
• Adapting Observational Studies to
Clinical Trial standards
• Training investigators on differences
– Consistent protocol across subject classes
– Strict CRF change standards
– Adverse event tracking
• Expanding OpenClinica for study
needs
– PHI, Granulated permissions, Samples,
etc.
What do we bring?
What do we leave behind?
Sample Profile
Who
When
What
Who
When
Manage All Event Definitions in Study Default Study
Logistica
What
New Functionality
All Together
Consent Form
Can we print yet?
56YG
P1-039338-6
Consent Form
Enrollment
Study Name
Barcode Templates
Template Items
56YG
P1-039338-6
Consent Form
Enrollment
Can we print yet?
56YG
P1-039338-6
Consent Form
Enrollment
Study Name
Barcode Templates
Can we print yet?
56YG
P1-039338-6
Consent Form
Enrollment
Study Name
Adding Subjects
Creating Samples
Create Samples
Sample Generation
Review
Sample Profile
•Who, When, What
Barcode Template
•Main record in determining how printing happens
•Label stock, Template items, Associated samples
Template Items
•Set the individual data elements that are shown on a
template
Associated Samples
•Set the template the should be used for sample types
Generate Samples
•Create the records for all samples defined in the profile
The Next Question
Who
When
What
Where
Sample Sets
Sample Sets
00002
LIMS
Set Logistics
Obtain
Samples
•
•
•
Create samples
Set collected
date
Define status
Add to
Set
•
Update status
Prepare
Shipment
•
•
•
•
Set ship date
Notify receiving lab
Lock sample status
Lock set contents
Receive
Shipment
•
•
•
Update sample
to received
Update set to
received
Import manifest
into LIMS
Looking for feedback
search sets, unique set, set operations, outside interfaces
Current
Future
• SOAP Access to
necessary OpenClinica
Data
• Authentication through
existing OpenClinica
login
• Two changes JSP pages
linking to logistics
components
• Additional SOAP services
(subject group classes)
• Expand set logistics
tools
• Default reports
• Interface integration
• Q1 2014 Source release
Questions/Feedback
babbagej@msu.edu