BME 303/L5: The Cell Division Cycle This lecture will cover: • Overview of the cell cycle • The cell-cycle control system • G1 phase • S phase • M phase • Mitosis • Cytokinesis • Control of cell numbers and cell size 1 Quiz #1 Average = 2.41/3 High = 3.5 Low = 0.5 2 Homework #1 The paper “Discher et al., Science, 1999” has been posted. Assignment is due by Friday night 9/19 at midnight Follow instructions in syllabus on how to write the homework. Please note that it is not acceptable to copy sentences from journal articles, even if you use quotations! DO NOT USE AI…there is now an AI feature in Turnitin that checks for AI usage. If this shows >25% of report was written by AI, that HW is a zero. 3 What is a Cell Cycle? • Somatic cells duplicate their contents and divide • Eukaryotic cells divide every 8 to 20 hours. • Prokaryotic cells like bacteria divide every 45 minutes. • Virus replicates 10.3 billion copies/day. Fig : 18-1, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 4 Cell Cycle is divided into 4 Phases The eukaryotic cell cycle usually occurs in four phases. Interphase: The cell grows continuously; which consists of three phases: (G1, S, G2) • Gap 1 – Cell grows (the gap between M phase and S phase) • S phase – DNA replication • Gap 2 – Protein synthesis, Prepare for cell division (the gap between S phase and M phase) M phase (mitotic phase): • Mitosis - Divide nucleus contents (nuclear division) • Cytokinesis– Separation of a cell into two cells (cytoplasmic division) Fig : 18-2, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company M phase is typically much shorter and G1 much longer than shown here. 5 The G0 Phase • G0 is a Quiescent or Resting State. • Some cells like hepatocytes enter G0 temporarily. • Differentiated cells like neurons spend their life in G0. 6 Cell-Cycle Control System The cell-cycle control system ensures that key processes in the cycle occur in the proper sequence. • The cell-cycle control system triggers Essential Processes when it reaches Transition Points • Essential Processes: -DNA Replication in S Phase -The Segregation of duplicated Chromosomes in Mitosis. • Extracellular or Intracellular Conditions are unfavorable -The cycle will be halt transiently at specific transition points in G1, G2, or M Phases -Exp. DNA is damaged-unfavorable Fig : 18-3, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 7 Cyclin-Dependent Protein Kinases (Cdks) Cyclin-dependent kinase (Cdk) drives the progression of cell cycle. • Cyclins: Eukaryotic proteins involve in controlling nuclear division via Cdk activation • Cdk-inactive until bound to cyclin. • Dimerization of cyclin-Cdk -autophosphorylation (signaling molecule) -activates signaling pathways • Cell Cycle = Interphase + M phase Fig : 18-2, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Fig : 18-4, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 8 Distinct Cyclin and Cdk Complexes Controls Cell-Cycle Fig : 18-8, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Distinct Cdks associate with different cyclins to trigger the different events of the cell cycle. The accumulation of cyclins helps regulate the activity of Cdks. • Active S cyclin and Cdks complex, called S-Cdk triggers S phase • Active M cyclin and Cdks complex, called M-Cdk triggers M phase 9 The Activity of Cdks Is Controlled By Various Mechanisms 1-The activity of some Cdks is regulated by cyclin degradation. • Ubiquitylation of S or M cyclin by APC/C • Cyclin destruction proteasomes. in • The loss of cyclin = Cdk inactive. Fig : 18-9, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 2-The activity of a Cdk can be blocked by the binding of a Cdk inhibitor. • The inhibitor protein (p27) binds to an activated cyclin– Cdk complex. Fig : 18-11, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • No Phosphorylation of target proteins = no progress through G1 into S phase. 3-The inhibitory phosphates must be removed (M-Cdk). •Inhibitory protein kinase- Wee1 phosphorylates newly formed M cyclin–Cdk complex - Inactive •Phosphates are removed by an activating protein phosphatase called Cdc25 - Active Fig : 18-10, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 10 Mechanisms to Pause The Cycle The cell-cycle control system uses various mechanisms to pause the cycle at specific transition points. The activity of Cdks could be; -regulated (APC/C) by cyclin degradation -blocked by the binding of a Cdk inhibitor (p27) -in inactive state until its phosphates are removed by an activating protein phosphatase (Cdc25) Fig : 18-12, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 11 Interphase – G1, S, G2 Cell Cycle Interphase Protein synthesis, getting ready for cell division Active cell growth Panel : 18-1 (Part 2), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Centrosome is duplicated • DNA is duplicated • Cell has doubled in size • M-cyclin levels are low 12 The G1 Phase • Cdks are stably inactivated in G1. • Mitogens promote the production of the cyclins that stimulate cell division. • DNA damage can temporarily halt progression through G1. • Cells can delay division for prolonged periods by entering specialized nondividing states. 13 Cell Proliferation Fig : 18-14, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Mitogens may stimulate cell proliferation is by inhibiting the Retinoblastoma (Rb) protein. • NO mitogens- dephosphorylated Rb protein holds transcription regulators- inactive state. • Mitogens+Receptors - the formation and activation of Cylin/Cdk complexes (G1-Cdk and G1/S-Cdk complexes). • Those Cylin/Cdk complexes phosphorylate, and thereby inactive Rb protein- activate the transcription of genes required for entry into S phase. 14 DNA Damage can arrest the Cell Cycle in G1 DNA DAMAGE Active Protein Kinases Both active and stable the p53 protein (no degradation) The transcription of the Cdk inhibitor Protein p21. The p21 protein binds to G1/SCdk and S-Cdk Inactive Cyclin/Cdk complexes Cell cycle arrests in G1. Fig : 18-15, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 15 The S Phase • S-Cdk initiates DNA replication and blocks rereplication. (more details in L19) • Incomplete replication can arrest the cell cycle in G2. 16 The M Phase • The division of a cell into two daughters occurs in the M Phase of the cell cycle. • The M Phase consist of Mitosis (Nuclear Divison) and Cytokinesis (Cytoplasmic Division) . • M-Cdk drives entry into Mitosis. • Cohesins and Condensins help configure duplicated chromosomes for separation. • Different cytoskeletal assemblies carry out Mitosis and Cytokinesis. • M phase occurs in stages. 17 M-Cdk Creates a Positive Feedback Loop Activated M-Cdk indirectly activates more M-Cdk, creating a positive feedback loop. Inactive Cdc25 Active Cdc25 Active M-Cdk Phosphorylates Cdk-activating (Cdc25). and activates phosphatase More Cdc25 = more active M-Cdk by the removal of the inhibitory phosphate groups Fig : 18-17, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 18 Two Types of Cell Division Mitosis: - Cell division that occurs in somatic cells (cell body). - Cell divides into two identical daughter cells - Each daughter cell has same number of chromosomes as the parent cell (diploid cell). Meiosis: - A specialized type of cell division that occurs in sexual reproduction involving germ cells. - One cell divides into four daughter cells - Each daughter cell has half the number of chromosomes of the parent cell (haploid cell). (It will be discussed in more detail in L23) 19 Mitotic Cell Division Panel : 18-1 (Part 1), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company 20 MITOSIS (Nuclear Division) • Centrosomes duplicate to help form the two poles of the mitotic spindle. • The mitotic spindle starts to assemble in Prophase. • Chromosomes attach to the mitotic spindle at Prometaphase. • Chromosomes line up at the spindle equator at Metaphase. • Chromosomes segregate during Anaphase. • The nuclear envelope re-forms at Telophase. 21 Review of Certain Terms Centrioles Adapted from Panel : 18-1 (Part 3), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Microtubules – form mitotic spindles • Centrosomes – where microtubules are organized – centrosome consists of 2 centrioles right-angle to each other • Chromosomes / chromatids – kinetochore divides the chromosome into two chromatids Cohesins and Condensins help to configure duplicated chromosomes for segregation. • 22 Cohesins and Condensins Fig : 18-18a, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Cohesins tie together the two adjacent sister chromatids in each duplicated chromosome. • • They form large protein rings that surround the sister chromatids They prevent sister chromatids from coming apart, until the rings are broken late in mitosis. Fig : 18-18b, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Condensins help coil each sister chromatid (each DNA double helix) into a more compact structure to be more easily segregated during mitosis. • The exact mechanism how they might package chromatids is not known. 23 Cytoskeletal Structures that Mediate M Phase Fig : 18-19, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Two transient cytoskeletal structures mediate M phase in animal cells. • The Mitotic spindle assembles first to separate the duplicated chromosomes. Then, The Contractile ring assembles to divide the cell in two. • Whereas the Mitotic Spindle is based on Microtubules, the Contractile Ring is based on Actin and Myosin. • Plant cells use a very different mechanism to divide the cytoplasm, as we discuss later. 24 Sister Chromatids Fig : 18-20, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Sister chromatids separate at the beginning of Anaphase. • The mitotic spindle then pulls the separated sisters to opposite poles of the cell. 25 Centrosome Fig : 18-21, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • The centrosome in an interphase cell duplicates to form the two poles of a mitotic spindle. • Most animal cells contain a single centrosome, which consists of a pair of centrioles (gray) embedded in a matrix of proteins (light green). • Centrosome duplication begins at the start of S phase and is complete by the end of G2. • Initially, the two centrosomes remain together, but, in early M phase, they separate, and each nucleates its own aster of microtubules. • The centrosomes then move apart, and the microtubules that interact between the two asters elongate preferentially to form a bipolar mitotic spindle, with an aster at each pole. • When the nuclear envelope breaks down, the spindle microtubules are able to interact with the duplicated chromosomes. 26 Mitotic Spindle Fig : 18-22, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • A bipolar mitotic spindle is formed by the selective stabilization of interacting microtubules. • New microtubules grow out in directions from the two centrosomes. • The two ends of a microtubule (the plus and the minus ends) have different properties, and it is the minus end that is anchored in the centrosome. • The free plus ends are dynamically unstable and switch suddenly from uniform growth (outwardpointing red arrows) to rapid shrinkage (inwardpointing blue arrows). • When two microtubules from opposite centrosomes interact in an overlap zone, motor proteins and other microtubule-associated proteins cross-link the microtubules together (black dots). • This stabilizes the plus ends by decreasing the probability of their depolymerization. random 27 Kinetochores Fig : 18-23, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Kinetochores attach chromosomes to the mitotic spindle. (A) A fluorescence micrograph of a duplicated mitotic chromosome. The kinetochores are stained red with fluorescent antibodies that recognize kinetochore proteins. (B) Schematic drawing of a mitotic chromosome showing its two sister chromatids attached to kinetochore microtubules, which bind to the kinetochore at their plus ends. Each kinetochore forms a plaque on the surface of the centromere. (C) Each microtubule is attached to the kinetochore via interactions with multiple copies of an elongated connecting protein complex (blue). • These complexes bind to the sides of the microtubule near its plus end, allowing the microtubule to grow or shrink while remaining attached to the kinetochore. 28 Three Types of Microtubules Fig : 18-24, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Three types of Spindle Microtubules make up the Mitotic Spindle. (A) Three types of spindle microtubules are: Astral Microtubules, Kinetochore Microtubules, and Interpolar microtubules. In reality, the chromosomes are much larger than shown, and usually multiple microtubules are attached to each kinetochore. (B) Fluorescence micrograph of duplicated chromosomes aligned at the center of the mitotic spindle. In this image, kinetochores are red dots, microtubules are green, and chromosomes are blue. 29 Mitotic Phase – Prophase Total chromosomes = 46 Adapted from Panel : 18-1 (Part 3), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Microtubules reorganize to make astrals (spindles) • Centrosomes move to opposite poles • Chromosomes condense • Kinetochore is formed on chromosome strand to generate two sister chromatids • Nuclear envelope begin to break The nuclear envelope breaks down and re-forms during mitosis. 30 M Phase – Prometaphase Adapted from Panel : 18-1 (Part 4), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Chromosomes are attached to spindles at the kinetochore. • Chromosomes undergo oscillation movement back and forth on the spindle. • Chromatids attached at the kinetochores are pulled away to two opposite poles by the pair of centrioles. • M-cyclin levels are high. 31 M Phase – Metaphase Adapted from Panel : 18-1 (Part 5), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Chromosomes are aligned at the equator of the spindle, midway between the spindle poles. • Paired kinetochore microtubules on each sister chromatid are attached to opposite poles of the spindle • Mitotic checkpoint ensures the fidelity of this bi-polar attachment. 32 M Phase – Anaphase Adapted from Panel : 18-1 (Part 6), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • M-cyclin is at the lowest level • Paired chromatids are separated from spindle equator and pulled towards the opposite poles at the kinetochore by the centrioles. • Kinetochore microtubules shorten and the sister chromatids are pulled toward opposite poles- Anaphase A movement • The two spindle poles move apart by (1) the Elongation of spindles (2) forces exerted on astral microtubules at each spindle pole pull the poles away from each other Anaphase B movement • Plant cells generally do not have centrosomes and therefore have less sharply defined spindle poles than do animal cells; 33 M Phase – Telophase Adapted from Panel : 18-1 (Part 7), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Two sets of chromosomes are formed at the spindle pole decondense. • Nuclear envelope begins to reform. • Cleavage furrow (Contractile Ring) begins to form at the middle of 2 daughter cells on the circumference of the cell. and begin to 34 M Phase – Cytokinesis Total chromosomes = 46 Two identical daughter cells Total chromosomes = 46 Adapted from Panel : 18-1 (Part 8), Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • Division of the cytoplasm is completed by the Contractile Ring of actin and myosin filaments at the cleavage furrow. • Produces two identical Diploid daughter cells (2n). • Cells re-enter interphase in G1. • Microtubules reform their interphase organization. 35 Central Spindle The mechanism is still uncertain. Fig : 18-32, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • In Anaphase overlapping Interpolar Microtubules form Central Spindle. • The Central Spindle then recruit and activate proteins that signal the cell cortex to assemble the Contractile Ring. • Position of the Cleavage Furrow is dictated by the Central Spindle. • In this model, the Interpolar Microtubules recruit proteins that generate a signal (red arrows) that activates a protein called RhoA in the cell cortex. • RhoA, a member of the Rho family of GTPases, controls the assembly and contraction of the Contractile Ring midway between the Spindle Poles. • The two daughter cells will be equal size. 36 Contractile Ring Fig : 18-33a, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company • The Contractile Ring divides the cell in two. • Schematic diagram of the mid region of a dividing cell showing the Contractile Ring beneath the plasma membrane and the remains of the Interpolar Microtubules. 37 Cytokinesis in Plants Fig : 18-35, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Cytokinesis in a plant cell is guided by a specialized microtubule-based structure called the Phragmoplast. (A) At the beginning of Telophase, after the chromosomes have segregated, a new cell wall starts to assemble inside the cell at the equator of the old spindle. (B) The Interpolar Microtubules of the mitotic spindle remaining at Telophase form the phragmoplast and guide The vesicles, which are filled with cell wall material, derived from the Golgi apparatus, toward the equator of the spindle. They fuse to form the growing new cell wall that grows outward to reach the plasma membrane and original cell wall. (C) The preexisting plasma membrane and the new membrane surrounding the new cell wall then fuse, completely separating the two daughter cells. (D) A light micrograph of a plant cell in telophase is shown at a stage corresponding to (A). The location of the growing new cell wall is indicated by the arrowheads. 38 Apoptosis Apoptosis is mediated by an intracellular Proteolytic Cascade. Survival Factors suppress apoptosis by regulating Bcl2 family members. Fig : 18-39, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Inactive Procaspase Apoptotic Signal Active Initiator Caspases Active Executioner Caspases Cleave key proteins Apoptosis Fig : 18-42, Essential Cell Biology, Fifth Edition Copyright © 2019 W. W. Norton & Company Cell-surface Receptors The Survival Factor Active Intracellular Signaling Pathway Activate Transcription Regulator Activates Bcl2 gene NO Apoptosis 39