IAS Biology Unit 3 CORE PRACTICAL 1 Use a semi-quantitative method with Benedict’s reagent to estimate the concentrations of reducing sugars and with iodine solution to estimate the concentrations of starch, using color standards Estimating the concertation of reducing sugar in an unknown solution: Steps 1. Decide on a range of glucose concentrations before beginning to work.[e.g. 0.25%, 0.5%, 1.0%, 1.5%, 2.0%] 2. Label 6 test tubes and the 5 beakers with the concentrations you’ve decided on, and one test tube will be labeled with your control experiment 3. Using a clean syringe, distilled water, and 0.25% glucose, fill the labeled beaker with 5 cm3 of glucose solution. Repeat this for the four other concentrations. 4. Using a clean syringe, fill the 6 labeled test tubes with 2 cm3 of Benedict’s reagent 5. Add 1 cm3 of each glucose solution to its corresponding labeled test tube, and add 1 cm3 of the control solution to the 6th test tube [e.g. fruit juice] 6. Give each test tube a gentle shake to ensure the contents are well-mixed, and place the test tubes in a water bath of a known temperature, and start a timer [e.g. 5 minutes] 7. After the [5 minutes] take out the test tubes carefully, using tongs, as to not injure yourself. 8. Observe the test tubes and record the color change for each concentration Section 1 – Independent and dependent variables Dependent variable – color of Benedict’s reagent Independent variable – glucose concentration Section 2 – Control variables (variable – how it is controlled) 1. 2. 3. 4. 5. Volume of glucose solutions – using a syringe Volume of Benedict’s reagent – using a syringe Concentration of Benedict’s reagent – taking all samples from the same bottle Surrounding temperature in water – using a water bath Time given for color change in water bath – using a timer Section 3 – Color change Blue → Green → Yellow → Orange → Brick Red How to know the concentration? The concentration won’t be exactly known, but the color of the unknown solution will guide us towards the approximate value. For example, if the color of 0.5% glucose was yellow, and the color of the unknown solution was also yellow, then we know that the unknown solution is near 0.5% concentration. 1 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Estimating the concertation of starch in an unknown solution: Steps 1. Decide on a range of starch concentrations before beginning to work.[e.g. 0.25%, 0.5%, 1.0%, 1.5%, 2.0%] 2. Label 6 test tubes and the 5 beakers with the concentrations you’ve decided on, and one test tube will be labeled with your control experiment 3. Using a clean syringe, distilled water, and 0.25% starch, fill the labeled beaker with 5 cm3 of starch solution. Repeat this for the four other concentrations. 4. Using a clean syringe, fill the 6 labeled test tubes with 0.5 cm3 of Iodine solution and 10 cm3 of distilled water 5. Add 5 cm3 of each starch solution to its corresponding labeled test tube, and add 5 cm3 of the control solution to the 6th test tube [e.g. potato] 6. Give each test tube a gentle shake to ensure the contents are well-mixed 7. Observe the test tubes and record the color change for each concentration Section 1 – Independent and dependent variables Dependent variable – color of Iodine solution Independent variable – starch concentration Section 2 – Control variables (variable – how it is controlled) 1. Volume of starch solutions – using a syringe 2. Volume of Iodine solutions – using a syringe 3. Concentration of Benedict’s solution – taking all samples from the same bottle Section 3 – Color change Red-Brown → Blue-Black How to know the concentration? This is sort of different from that of the glucose concentration. Here, the use of a colorimeter may be required. This is due to the fact that color changes only once, and it is specifically blue-black, so a colorimeter is used to figure out the intensity of blue-black for each concentration, then the intensity of the blue-black in the control is compared to the concentrations, and whichever is closest in intensity, will be closest in concentration to the control experiment Safety measures for both experiments (risk – how to prevent it) 1. Skin contact with benedict’s reagent – wear eye goggles, gloves, and a lab coat 2. Burns due to hot test tubes – use tongs to carry the test tubes when they’re hot 3. Toxicity of fruit juice/control solution – keep the fruit juice/control solution in a closed container and do not taste it 2 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 CORE PRACTICAL 2 Investigate the Vitamin C content of food and drink Estimating Vitamin C content in an unknown solution Steps 1. Decide on a range of Vitamin C concentrations, in order to compare them to the food or drink [e.g. 0.25%, 0.5%, 1.0%, 1.5%, and 2.0%] 2. Start by using a syringe to draw up 5 cm3 of 1% DCPIP and shake it well, then add 1 cm3 of that DCPIP to a test tube, labeled with the desired concentration 3. Use a clean syringe to draw up 5 cm3 of 0.25% Vitamin C solution 4. Dropwise, add the Vitamin C solution to the test tube containing the 1 cm3 DCPIP, and after each tube, shake the tube gently. Once you’ve noticed the blue color of the DCPIP disappear, then stop adding drops, and record the volume of the Vitamin C solution needed to do this 5. Repeat the steps 2-4 with the same concentration of Vitamin C solution, and record the average volume of Vitamin C solution needed to decolorize the DCPIP 6. Repeat the steps 2-5 with other Vitamin C concentrations, recording the data in a suitable table 7. Now, to start with your control experiment, add 1 cm3 of DCPIP to a test tube, and use a syringe to draw up 5 cm3 of fruit juice, as your control experiment 8. Dropwise, add the fruit juice to the test tube containing the 1 cm3 DCPIP, and after each drop, shake gently to ensure that the contents were mixed. Once you’ve noticed the blue color of the DCPIP disappearing, then stop adding drops, and record the volume of fruit juice needed to do so 9. Repeat steps 6-7 with the same fruit juice and record the average volume of fruit juice needed to decolorize the DCPIP Section 1 – Independent and dependent variables Dependent variable – color of DCPIP Independent variable – Vitamin C concentration Section 2 – Control variables (variable – how it is controlled) 1. Volume of DCPIP – using a syringe 2. Concentration of DCPIP – obtaining the DCPIP from the same container 3. Volume of Vitamin C solution and fruit juice – using a syringe Section 3 – Color change Blue → Colorless 3 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 How to know the concentration? This is different for this experiment specifically. You may be asked to use the following formula in order to obtain the concentration of the control solution [in our example; fruit juice], so long you have the needed data, and only the concentration is missing: Concentration of Vitamin C in fruit juice = Volume of standard solution X concentration of standard Volume of fruit juice solution Key example: If the volume of the standard solution was 2 cm3 and the volume of the fruit juice was 1.5 cm3, while the concentration of the standard solution was 1%, what would be the concentration of Vitamin C in the fruit juice? Concentration of Vitamin C in fruit juice = 2 1.5 X 10 = 13.3 mg Safety measures (risk – how to prevent it) 1. Splash damage of hot water or DCPIP – wear eye protection 2. Skin contact with DCPIP and test tube solutions – wear gloves and a lab coat 3. Toxicity of fruit juice/control solution – keep the fruit juice/control solution in a closed container and do not taste it 4 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 CORE PRACTICAL 3 Investigate membrane properties including the effect of alcohol and temperature on membrane permeability Effect of temperature on membrane permeability Steps 1. First of all, prepare eight water baths of a range of temperatures [0,5°c,10°c,15°c,20°c,25°c,30°c,35°c] 2. Using a clean syringe, add 10 cm3 to eight test tubes (10 cm3 to each) and label them with the temperature of the water bath in which they’ll be placed 3. Place each test tubes into its corresponding water bath, to acclimatize them, and start a timer for 5 minutes. Check the temperature of each water bath using a thermometer, as the temperature will not be exact, it’ll be approximate 4. Use a cork borer to cut 8 beetroot cylinders, and then use a knife and a white tile to trim them all to the same length (e.g. 1 cm3) 5. Wash the beetroot cylinders with distilled water until water runs clean, and pat them with a paper towel so that no pigment due to cutting stays on the cylinder. 6. Add one beetroot cylinder to each test tube in the water bath, and start a timer for 15 minutes 7. Shake the test tubes once, then discard the beetroot cylinder from each test tube, but keep the liquid 8. Set the colorimeter to a blue/green filter and percentage transmission, making sure you’ve zeroed the colorimeter using a blank cuvette filled with distilled water. 9. Transfer the liquid from each test tube into a cuvette, then place the cuvette inside the colorimeter and take the percentage transmission reading. Record your results in a suitable table Section 1 – Independent and dependent variables Dependent variable – percentage transmission/color intensity (membrane permeability) Independent variable – temperature Section 2 – Control variables (variable – how it is controlled) 1. 2. 3. 4. 5. 6. Volume of distilled water in each test tube – using a syringe Time in water bath – using a stop clock Diameter of beetroot cylinders – using cork borer Length and width of beetroot cylinders – using ruler and a white tile Age of beetroot cylinder – obtain from the same plant Type of beetroot cylinder – obtain from the same tissue 5 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Effect of alcohol on membrane permeability Steps 1. Add 10 cm3 of ethanol to 5 test tubes, of different concentrations [e.g. 0.2%, 0.4%, 0.6%, 0.8%, 1.0%] 2. Use a cork borer to extract 5 beetroot cylinders, then trim them to the same size using a knife and a white tile (e.g. 1 cm). Afterwards, wash the cylinders with distilled water and pat them gently with a paper towel, to make sure that none of the pigment due to cutting stays 3. Add a beetroot cylinder to each of the test tubes, then leave them for 15 minutes to soak in the ethanol 4. Shake the test tubes once, then discard the cylinders from the test tubes but keep the liquid 5. Set the colorimeter to blue/green filter and percentage transmission, making sure you’ve zeroed it using a blank cuvette filled with distilled water 6. Transfer the liquid from each test tube to a cuvette, and place the cuvette in the colorimeter, taking a percentage transmission reading. Record your results in a suitable table. Section 1 – Independent and dependent variables Dependent variable – percentage transmission/color intensity (membrane permeability) Independent variable – alcohol concentration Section 2 – Control variables (variable – how it is controlled) 1. 2. 3. 4. 5. 6. Volume of distilled water in each test tube – using a syringe Volume of ethanol – using a syringe Diameter of beetroot cylinders – using cork borer Length and width of beetroot cylinders – using ruler and a white tile Age of beetroot cylinder – obtain from the same plant Type of beetroot cylinder – obtain from the same tissue Safety measures (risk – how to prevent it) 1. Water baths above 50°c may scald – keep away from the water bath when opening it as to not get splashed with hot water or burnt by steam, and wear eye goggles 2. Sharp items such as cork borer and knives may injure your hand – always cut or push downwards onto the tile, and wear gloves if necessary 3. Ethanol is highly flammable – keep ethanol away from naked flames, and always keep stoppers on ethanol bottles 4. Electric plugs – do not handle electric plugs or switches with wet hands 5. Contamination – always wash hands with soap when you’re done working 6 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 How to see the effect? In order to see the effect of temperature on membrane permeability, we’ll be using tables and graphs as shown below. The higher the transmission or color intensity, the greater the effect and the more permeable the membrane. As a rule of thumb for most cases, as the temperature or ethanol concentration increases, so will the permeability of the membrane, because high temperatures denature the shape of proteins and enzymes in the membrane, making it more permeable, and high alcohol concentrations cause the phospholipids in the cell membrane to become emulsified. 0 / 0.2 Temperature/°c or Ethanol concentration/% 10 / 0.4 20 / 0.6 Percentage transmission of membrane Mean transmission of membrane Temperature's effect on membrane permeability Percentage transmission 0.8 0.7 0.6 0.5 0.4 0.3 0.2 0.1 0 Temperature/°c or Ethanol concentration In the exam, you may be asked to fill in data, draw graphs, or even title graphs. This page gives you an idea about how your work should look like, given that the independent variable is the same (however, it usually is not) 7 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 CORE PRACTICAL 4 Investigate the effect of temperature, pH, enzyme concentration and substrate concentration on the initial rate of enzyme-catalyzed reaction Effect of temperature on the initial rate of enzyme-catalyzed reaction Steps 1. Prepare five water baths of a range of your desired temperatures [e.g. 10°c, 20°c, 30°c, 40°c, 50°c], and use a thermometer to ensure that the water baths are of the correct temperatures 2. Add 2 cm3 of 1% trypsin to 5 test tubes, and label each test tube with a temperature from your range [i.e. first test tube labeled with 10°c], and place each test tube to its corresponding water bath 3. Add 2 cm3 of milk to 5 different test tubes, and label each test tube with a temperature from your range [i.e. first test tube labeled with 10°c], and place each test tube to its corresponding water bath 4. Leave the test tubes for 5 minutes so that they reach the required temperature 5. Before taking out the test tubes, zero the colorimeter using a solution of 2 cm3 of 1% trypsin and 2 cm3 of distilled water in a cuvette 6. Take out the test tubes and pour 2 cm3 of the test tube containing milk of the first temperature into the 2nd cuvette 7. Take out the test tube and pour 2 cm3 of the 1% trypsin into the same cuvette containing the milk, from the same water bath as that of the test tube containing milk. Then mix the two solutions quickly and place your solution into the colorimeter 8. Start the data logger and measure the color absorbance immediately, then keep measuring the absorbance once every 15 seconds for 5 minutes or until there is no significant change in readings 9. Rinse the cuvette, and repeat the steps 6-8 for the other four temperatures making sure you’ve zeroed the colorimeter before taking the readings, then record your data in a suitable table Section 1 – Independent and dependent variables Dependent variable – initial rate of enzyme-catalyzed reaction/enzyme activity Independent variable – temperature Section 2 – Control variables (variable – how it is controlled) 1. 2. 3. 4. 5. 6. Volume of trypsin in each test tube – using a syringe Concentration of trypsin in each test tube – way of preparation Concentration of milk suspension - way of preparation Volume of milk – using a syringe Time in water bath – using a stop clock pH of the solution – using a buffer 8 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Effect of pH on the initial rate of enzyme-catalyzed reaction Steps 1. Select a range of buffer solutions (the pH range) which you want to investigate in relation to the enzyme activity [e.g. 4,5,6,7,8] 2. Start off by placing 1 cm3 of buffer, 2 cm3 of distilled water, and 1 cm3 of trypsin solution into a cuvette and use it in order to zero the colorimeter. 3. Pour 1 cm3 of trypsin, 1cm3 of your first buffer solution, and 2 cm3 of milk into a cuvette and working quickly, mix the solution [buffer and trypsin] and the milk b shaking gently, and place the cuvette into the colorimeter and start the data logger 4. Measure the absorbance immediately, then once every 15 seconds for 5 minutes or until there is no significant change in readings 5. Rinse the cuvette and repeat the steps 2-4 for the other pH values, but remember to zero the colorimeter using the solution in step 2 before taking the readings, and record your data in a suitable table Section 1 – Independent and dependent variables Dependent variable – initial rate of enzyme-catalyzed reaction/enzyme activity Independent variable – pH Section 2 – Control variables (variable – how it is controlled) 1. 2. 3. 4. 5. Volume of trypsin in each test tube – using a syringe Concentration of trypsin in each test tube – way of preparation Volume of milk – using a syringe Temperature – using a water bath, an AC unit, or a thermostat Concentration of milk suspension - taking the milk suspension samples from the same container and through the way of preparation 9 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Effect of enzyme concentration on the initial rate of enzyme-catalyzed reaction Steps 1. First of all, check your dilution calculations and decide on a range of enzyme concentrations [e.g. 0.2%, 0.4%, 0.6%, 0.8%, 1.0%], then use a solution of 2 cm3 of trypsin solution and 2 cm3 of distilled water in a cuvette to zero the colorimeter 2. Working quickly, mix 2 cm3 of milk suspension and 2 cm3 of the 0.2% trypsin in the second cuvette, and place the cuvette in a colorimeter, and start the data logger 3. Measure absorbance immediately, then once every 15 seconds for 5 minutes or until there is no significant change in results 4. Rinse the cuvette that you’ve used for the first solution with distilled water, and repeat the steps 2-4 for the 4 other concentrations, making sure you’ve zeroed the colorimeter before taking the recordings, and record your data in a suitable table Section 1 – Independent and dependent variables Dependent variable – initial rate of enzyme-catalyzed reaction/enzyme activity Independent variable – enzyme concentration Section 2 – Control variables (variable – how it is controlled) 1. 2. 3. 4. 5. Volume of trypsin in each test tube – using a syringe Volume of milk – using a syringe Temperature – using a water bath, an AC unit, or a thermostat pH – by the use of a buffer Concentration of milk suspension – way of preparation Effect of substrate concentration on the initial rate of enzyme-catalyzed reaction Steps 1. First of all, check your dilution calculations and decide on a range substrate concentrations, in this case, the milk [e.g. 0.2%, 0.4%, 0.6%, 0.8%, 1.0%], then use a solution of 2 cm3 of distilled water and 2 cm3 of 1% trypsin in a cuvette to zero the colorimeter reading 2. Working quickly, mix 2 cm3 of 1% trypsin and 2 cm3 of 0.2% milk suspension in a cuvette, and place the cuvette in a colorimeter and start the data logger 3. Measure absorbance immediately, then once every 15 seconds for 5 minutes or until there is no significant change in readings 4. Rinse the cuvette that you’ve used for the first solution with distilled water and repeat the steps 2-4 for the 4 other concentrations, making sure you’ve zeroed the colorimeter before taking the readings, and record your data in a suitable table. Section 1 – Independent and dependent variables Dependent variable – initial rate of enzyme-catalyzed reaction/enzyme activity Independent variable – substrate concentration 10 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Section 2 – Control variables (variable – how it is controlled) 1. 2. 3. 4. 5. Volume of trypsin in each test tube – using a syringe Volume of milk – using a syringe Temperature – using a water bath, an AC unit, or a thermostat pH – by the use of a buffer Concentration of trypsin – way of preparation Safety measures (risk – how to prevent it) 1. Any trypsin splashing onto your eyes or body – wear goggles, a lab coat, and gloves 2. Inflammation on skin due to trypsin – wash your skin with cold running water 3. Water baths above 50°c may scald – keep away from the water bath when opening it as to not get splashed with hot water or burnt by steam, and wear eye goggles How to display the data? As we’ve said before, for each experiment, you’ll record your results in a table, and afterwards, you’ll plot them on a graph and see the trend or effect of the independent variable on the initial rate of enzyme activity. Below, we’ll take temperature as an example, Note: This table should work for all independent variables (the numbers are imaginary) Initial rate of enzyme activity Temperature/°c 0 10 20 30 40 50 Initial rate of enzyme activity 0 0.1 0.2 0.25 0.3 0.3 Effect of temperature on initial rate of enzyme activity 0.4 0.3 0.2 0.1 0 0 20 40 60 Temperature To measure the rate of reaction, draw a line at the steepest point and use the following formula to figure out the gradient, which gives you the initial rate of reaction Change in Y-axis Change in X-axis 11 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Gradient = 12 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 CORE PRACTICAL 5 & 7 (I) Use a light microscope to make observations and labelled drawings of suitable animal cells (II) Use a graticule with a microscope to make measurements and understand the concept of scale (III) Use a light microscope to make observations of transverse sections of roots, stems, leaves, plant tissues (IV) Identify Sclerenchyma fibers, Phloem, Sieve tubes, Xylem vessels, and their location Before we begin the steps for the core practical, we’ll need to familiarize ourselves with the inner workings of the microscope. First of all, there are mainly two types of microscope, the light microscope and the electron microscope. Below is a comparison between the 2 microscopes: Category Magnification Resolution Cost Specimen Observation to view the image Light Microscope 1500x 0.2 μm Cheap Usually dead; can sometimes be alive Using a light beam from underneath or light from the sun Electron Microscope 500 000x 0.1-1.0 nm Expensive Always dead due to being placed in a vacuum Uses a beam of electrons scattered by the specimen The light microscope A light microscope is usually used to look at specimens in institutions such as schools, as it is cheap, reliable, and can give a good image of the specimen. When using the light microscope, you’ll need to stain the specimen so that it is visible. There are a number of stains used: 1. 2. 3. 4. Hematoxylin – stains the nuclei of animal and plant cells Methylene blue – stains the nuclei of animal cells Acetocarmine – stains the chromosomes in dividing nuclei in animals and plants Iodine – stains starch containing material There are specific advantages and disadvantages to the light microscope Advantages of light microscope Can see parts of living animals or plants, which is useful when comparing prepared slides with living tissue Relatively cheap Relatively light and portable; can be used anywhere Disadvantages of light microscope Preserving and staining tissue can produce artifacts; which are not part of the living tissue, but occur due to the process of preserving and can be mistaken for living tissue Limited powers of resolution and magnification 13 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 In examinations, you may be asked to calculate the magnification of a certain image, if you’ve been given the real measurement, in order to do this, use the following formula:Magnification = Image size Actual size The electron microscope The electron microscope is usually used in large labs and scientific institutions to look at the detailed ultrastructure of specimen, and when using it, specimen must be in vacuum in order for the microscope to work, as air would scatter the electrons and produce a blurred image of the tissue, so they’ll always be dead. When staining the specimen, heavy metal ions such as uranium and lead are used. Afterwards, the microscope will produce two types of electron micrographs, which are: 1. Transmission electron micrographs (TEMs) – two dimensional images, similar to those from the electron microscope, but clearer 2. Scanning electron micrographs (SEMs) – have a lower magnification than TEMs, but show images in three dimensions The electron microscope also has some advantages and disadvantages Advantages of light microscope Huge powers of magnification and resolution; allow us to see the exact ultrastructure of specimen Disadvantages of light microscope All specimen must be examined in vacuum, so it is impossible to observe live tissue Specimen undergo extreme treatment which may produce artifacts Extremely expensive The instrument is large, must be kept at constant temperature and pressure, and is expensive to maintain (I) Calibration of the graticule Here, you’ll have to compare the graticule scale with the micrometer scale in order to figure out the length of one eyepiece unit, using the following steps: 1. Place a micrometer slide on the stage of the microscope, and focus on the micrometer scale using the low-power objective lens 2. Move the slide and rotate the eyepiece to align the scales of the eyepiece graticule and the micrometer scale in the field of view 3. Count the number of divisions on the eyepiece graticule and compare them to a known length on the micrometer scale to figure out the length of one eyepiece unit 4. Repeat steps 1-3 with the medium-power and high-power objective lens 14 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 (II) Making observations Once you’ve calibrated the graticule, you’ll be able to observe the cells, through the following steps: 1. Wash your hands with soap and water, then take a cotton bud and rub it gently onto the inside of your cheek to obtain somatic cells, then rub it in a circle on a microscopic slide, and place the cotton bud in a beaker of disinfectant solution 2. Add a few drops of methylene blue to the sample on the microscopic slide, then cover it with a cover slip 3. Turn the objective lens to low power, and examine the stained slide under the microscope. In order to do this, bring the lens as close to the slide as possible, while watching from the slide instrument, and look through the eyepiece using the coarse focusing knob to focus, while moving the lens away from the stage as to not damage the slide and the lens. Lastly, use the fine focus until a clear view of the cells is established 4. Carefully sketch a few cells 5. Use an eyepiece graticule to measure the cell’s diameter. Add the scale bar, a title, and the total magnification to your sketched diagram. The total magnification is not the same as the magnification of the drawing Total magnification = magnification of objective lens x magnification of eyepiece lens 6. Afterwards, turn the objective lens onto medium-power, and focus until the cells are clear and distinct, identifying as many details as you can. Finally, turn the objective lens onto the high-power, and focus until the details are as clear as possible, using the fine-focusing knob, then draw the details of the cell as accurately as possible. 7. Measure the length and breadth of two cells and include the measurements in your sketched diagram, then turn off the microscope and place the microscopic slide in a beaker of disinfectant solution 15 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 16 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 (III & IV) Using a light microscope to observe transverse sections of plant parts, and identify plant tissue such as sclerenchyma fibers, phloem, sieve tubes, xylem vessels, and their location Here, we won’t be examining animal cells, instead we’ll be observing plant cells and identifying their tissues instead, through the following steps: 1. First of all, prepare thin sections of plant stem by adding a few drops of water to a white tile, wetting your razor to reduce friction, and holding the plant cell firmly while keeping away from the edge of the razor, and cutting several thin transverse sections. Transfer the sections to a water-containing watch glass 2. Choose the thinnest transverse section, place it on a microscopic slide, add one drop of water and remove any excess water by touching the edge of the stem with absorbent paper 3. Wearing gloves and eye protection, add two drops of toluidine blue O stain to the stem and leave it for 2-4 minutes. Then, add a cover slip and gently remove excess stain using a paper towel 4. Turn the objective lens to low power, and examine the stained slide under the microscope. In order to do this, bring the lens as close to the slide as possible, while watching from the slide instrument, and look through the eyepiece using the coarse focusing knob to focus, while moving the lens away from the stage as to not damage the slide and the lens. Lastly, use the fine focus until a clear view of the cells is established 5. Staying on low-power or medium-power objective lenses, annotate a diagram of the section while showing the arrangement of the tissues, without drawing any cell details 6. Repeat steps 1-5 using a root piece 7. To make a leaf cross section, place the leaf between two thin polystyrene blocks, and gently stroke the polystyrene and the leaf with your razor to stroke off 4 or 5 thin sections 8. Select the thinnest section, and place it on a microscopic slide, then add 1 or 2 drops of water and cover it using a cover slip 9. Repeat steps 4 and 5 with the leaf 17 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 18 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Safety measures (risk – how to prevent it) 1. Methylene blue may be harmful when swallowed – handle the stain with care 2. Skin contact with methylene blue, iodine, or toluidine blue O – wear gloves, goggles, and a lab coat, and if any spills happen, clean them immediately 3. Biohazardous material and cotton buds – these could be harmful, so they should be placed in disinfectant solution immediately after use, and cotton buds should be used once by one person only 4. Daylight illumination with light microscope – do not use a light microscope with daylight illumination under the sunlight, as it might strike your eye and cause blindness 5. Razor blades and mounted needles – take care when using them and always cut away from oneself 19 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 CORE PRACTICAL 6 Prepare and stain a root tip squash to observe the stages of mitosis Observing mitosis under the microscope Steps 1. Fill a small bottle with 1mol dm-3 of hydrochloric acid and place it in a water bath of temperature 55°c and leave it for 15 minutes to allow the acid to warm up 2. Place a garlic clove at the top of the bottle making sure the roots are submerged, and leave it at 55°c for 5 minutes in order to soften the roots 3. Take out the garlic clove and rinse it with water to remove any excess HCL, then use a pair of sharp scissors to cut the root tips to 5-10 mm pieces making sure they fall onto a watch glass. Afterwards, add a drop of acetic orcein and cover the watch glass with a lid that is slightly loose (to prevent ejection of liquid during heating), then heat the watch glass in a 55°c water bath for 5 minutes to intensify the color 4. Remove the root tips from the watch glass, place them onto the microscopic slide and tease them apart using a mounted needle, then add one drop of acetic orcein [you may heat the slide to intensify the color], then add a drop of water to wash off any excess acetic orcein. Cover the slide with a cover slip 5. Wrap the slide with several layers of a paper towel and gently squash the root tips while not twisting as to not break the cover slip 6. Place the root tips onto the stage of the microscope, and start with the low power, while adjusting the focus and centering the cells in the field of view 7. Move up to the high power, and identify as many stages of mitosis as you can. Count the number of cells undergoing each stage of mitosis, as well as interphase, while recording your results in a suitable table, you can also calculate the mitotic index Mitotic index = Number of cells in mitosis Total number of cells 8. Draw and annotate one cell from each of the stages you have identified, making simple outlines of the cells and a group of chromosomes in them. Try to show the relative size and positions of chromosomes in the cells, and include a small description of what is happening in the drawing 20 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Safety measures (risk – how to prevent it) 1. Acetic orcein – acetic orcein is corrosive and causes burns, so always wear goggles, a lab coat, and if exposed to orcein, wash your skin for 10 minutes 2. HCL – avoid skin contact with HCL and wear gloves 3. Water baths above 50°c may scald – keep away from the water bath when opening it as to not get splashed with hot water or burnt by steam, and wear eye goggles 4. Daylight illumination with light microscope – do not use a light microscope with daylight illumination under the sunlight, as it might strike your eye and cause blindness 5. Glassware and Scissors – take care when using them and always cut away from oneself 6. Electric plugs – keep away from them when your hands are wet, and shut them off when you aren’t using them Risk assessment With this experiment, you may need to do a risk assessment, as follows The risk will be placed in the appropriate square for it based on your evaluation and previous experience 21 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 CORE PRACTICAL 8 Determining the tensile strength of plant fibers Measuring tensile strength Steps Tensile strength is the measure of how much stress or weight a plant fiber can handle before breaking. We can measure it for plant fibers using the following steps (for the purpose of being clear, we’ll use celery stalks as an example). It is important to know the graph of tensile strength 1. Remove nine fibrous strings from celery stalks, using a knife and a white cutting tile surface 2. Inspect the strings to make sure there are no cuts or breaks, and that all fibers have a constant diameter along them. Divide the 9 fibers into 3 groups [3 fibers 10 cm long, 3 fibers 15 cm long, and 3 fibers 20 cm long]. 3. Carefully clamp the 10 cm string between the two stands shown below, ensuring it is held securely, place cushioning under the fiber, and start adding weights 10g at a time until the string breaks. Record the mass required to break the fiber 4. Repeat the steps for the 2 other 10 cm fibers and record the mean mass needed to break the fiber, then repeat the experiment for the other fibers Section 1 – Independent and dependent variables Dependent variable – breaking strength/tensile strength Independent variable – weight of masses Section 2 – Control variables (variable – how it is controlled) 1. 2. 3. 4. Plant from which the fiber was obtained – same tissue and plant Length of fiber – using a ruler Temperature – using a water bath, an AC unit, or a thermostat Diameter of fiber – using a Vernier caliper to cut them all to the same diameter Safety measures (risk – how to prevent it) 1. Weights slamming the bench or feet – place cushioning under the middle of the fiber 2. Knife and spring scale – take care when using them and always cut away from oneself 22 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 CORE PRACTICAL 9 Investigate the antimicrobial properties of plants, including aseptic techniques for the handling of bacteria Investigating antimicrobial properties Steps Before we start, at all times you should follow aseptic techniques, meaning you’ll keep a yellow Bunsen burner beside you, and disinfect anything you use 1. Wash your hands with soap and water, disinfect your bench and leave it to dry for 10 minutes then wipe it 2. Place a piece of garlic and use a mortar and pestle to grind it into paste, then add 10 cm3 of alcohol to it to make an extract 3. Place a paper disc in the mortar to soak up the garlic and alcohol solution, then place the paper disc on an agar plate to dry 4. Using a marker pen, mark the 4 sides of the agar plate seeded with bacteria, one side with garlic, one side with mint, and 2 with control. 5. Open the lid of the Petri dish containing the bacteria-seeded agar away from yourself and only slightly, then use your forceps to place the paper disc containing the garlic extract in the correct quarter, and close the dish. 6. Clean the mortar and pestle, then repeat steps 2-6 with mint 7. Add a small amount of alcohol to a small beaker, and sock to paper discs in the beaker, then remove them and place them on a sterile agar plate to dry 8. Open the lid of the bacteria seeded Petri dish away from yourself and only slightly, and place the two paper discs in the control labelled quarters 9. Place one small piece of tape on each quarter, but don’t cover the dish completely 10. Invert the plate and incubate it at 27°c for 24 hours. 11. Afterwards, use a ruler to measure the inhibition zone caused by the extracts, and record your data in a table 12. Clear all of your equipment and sterilize the Petri dishes which you used. Section 1 – Independent and dependent variables Dependent variable – plant extract Independent variable – zone of inhibition Section 2 – Control variables (variable – how it is controlled) 1. Time of soaking – stop clock 2. Size of paper disc – taking them from the same container 3. Temperature – incubator 23 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi IAS Biology Unit 3 Safety measures (risk – how to prevent it) 1. 2. 3. 4. 5. Microorganisms are hazardous – only open the Petri dish slightly when performing the experiment, wash your hands before and after, and keep a yellow Bunsen burner flame beside you to prevent contamination Inoculated plates – do not open them, use the alternative plate provided for you Ethanol – do not decant it near a naked flame and use stoppers when not using ethanol Contamination – use aseptic techniques when transferring the bacteria to the Petri dishes, disinfect your bench when your done working, and any contaminated Petri dishes should not be opened, and should be destroyed by a lab technician Skin contact with disinfectant – carefully handle the disinfectant and wear gloves 24 © 2018 – Arranged and Edited by: Abdulrahman Tabaza and Omar Minawi
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