Vegetos https://doi.org/10.1007/s42535-023-00793-0 RESEARCH ARTICLES Grain level characterization of widely cultivating traditional and new improved rice (Oryza sativa L.) varieties of Sri Lanka using physical and chemical test methods Madara Dilrukshi Wijesekara Samaranayake1 · Walimuni Kanchana Subhashini Mendis Abeysekera2 · Ilmi Ganga Namali Hewajulige1 · Hewa Pathiranage Preethi Sudarshana Somasiri1 · Kariyawasam Ranaweerage Ranjith Mahanama3 · Dassanayake Mudiyanselage Jayantha Bandara Senanayake4 · Galbada Arachchige Sirimal Premakumara1,5 Received: 23 February 2023 / Revised: 19 November 2023 / Accepted: 27 November 2023 © The Author(s) under exclusive licence to Society for Plant Research 2024 Abstract Rice is the staple food over half of the world including Sri Lanka which has numerous rice varieties. Identification of Sri Lankan rice varieties (RVs) at the grain level is a great challenge due to its high diversity. Further, extremely limited research has been carried out on this topic to date. The present study aimed to characterize widely cultivating 10 traditional and 15 new improved RVs at grain level using internationally accepted physical and chemical test methods. Grain length and size were studied as physical tests (n = 5 each). Ferrous sulphate, phenol, modified phenol, NaOH and KOH tests (n = 4 each) were studied as chemical tests. Physical tests were able to group RVs into 4 groups as extra-long, long, medium and short grain rice. In contrast, chemical test methods, ferrous sulphate, phenol, modified phenol, NaOH and KOH tests were able to group RVs into 4 (no colour change, brown, strong brown and dark brown streaks), 5 (no colour change, strong brown, dark brown, reddish yellow and black), 5 (no colour change, strong brown, dark brown, dark reddish brown and black), 5 (pale yellow, yellow, olive yellow, light red and red) and 6 (pale yellow, yellow, olive yellow, light red, red and dark red) groups respectively. None of the physical or chemical test methods alone were able to characterize studied RVs at the grain level. The combination of both methods was able to cluster selected RVs into two main clusters (CI and CII) and was able to identify 3 RVs (Rathel, Suwadel and Kalu Heenati) at the grain level. It is concluded that the selected methods could be coupled with other varietal identification methods for grain level characterization of Sri Lankan rice. Keywords Varietal identification · Grain level characterization · Physical and chemical test methods · Traditional rice · New improved rice · Sri Lankan rice Introduction * Madara Dilrukshi Wijesekara Samaranayake madarasamaranayake@yahoo.com 1 Modern Research and Development Complex (MRDC), Industrial Technology Institute (ITI), Halbarawa Gardens, Malabe and Bauddhaloka Mawatha, Colombo 07, Sri Lanka 2 Department of Agricultural Technology, Faculty of Technology, University of Colombo, Colombo, Sri Lanka 3 Department of Chemistry, Faculty of Science, University of Colombo, Colombo, Sri Lanka 4 Rice Research and Development Institute, Batalagoda, Sri Lanka 5 Department of Basic Science and Social Science, Faculty of Nursing, University of Colombo, Colombo, Sri Lanka Rice is the staple food of half of the world’s population (Raju et al. 2017). It is reported to provide significant quantities of essential nutrients and numerous bio-active phytochemicals for rice consumers (Rathna Priya et al. 2019). As a result of the long history of cultivation and selection under diverse environments, rice exhibits a remarkable diversity (Raju et al. 2017; Rathna Priya et al. 2019). Further, high yielding, nutritionally and functionally sound hybrid rice varieties are continuously being introduced for commercial cultivation to meet the increasing demand due to rapid population growth (Birla et al. 2017). The consumer preference and market value of rice are highly varietal dependent based on grain quality Vol.:(0123456789) Vegetos characteristics of rice namely physicochemical, nutritional, functional and sensory properties (Birla et al. 2017; Rathna Priya et al. 2019; Zhou et al. 2018). Therefore, identification of the exact rice variety at the grain level has become a key interest among plant breeders, seed certifying authorities and rice growers (Singh et al. 2017a). Rice varietal identification can be performed through morphological, molecular, chemical and physical methods (Das et al. 2017; Kumar et al. 2021; Nagendra et al. 2020; Raju et al. 2017). Conventionally, rice varieties have been identified at the plant level using plant morphological characters which are tedious, time consuming (Mathat et al. 2019; Singh et al. 2017a) and do not facilitate to identification of rice varieties at grain level. Besides, it requires more area to carry out field grow-out-tests and also those characters may be altered by environmental factors (Mathat et al. 2019; Singh et al. 2017a). The molecular methods are more accurate and specific but need huge investment and thorough technical knowledge and skills (Nagendra et al. 2020). In contrast, physical and chemical test methods are relatively quicker, easy to carry out, reproducible and inexpensive (Das et al. 2017; Kumar et al. 2021; Raju et al. 2017). Internationally, physical and chemical test methods have been used by many researchers for varietal identification at grain level for different crops (Mathad et al. 2019; Rai et al. 2020) including rice to a certain extent (Das et. al. 2017; Kumar et al. 2021; Nagendra et al. 2020; Singh et al. 2017a; Vijayalakshmi and Vijay 2009). In Sri Lanka, rice is the staple food and it has a very long history of cultivation. The country holds more than 1000 traditional rice varieties and new improved high yielding rice varieties are also being introduced (Rambukwella and Priyankara 2016) to cater to the increasing demand for rice by rice consumers. The research carried out during the last 10–12 years in the country on the nutritional and health benefits of Sri Lankan rice were able to prove that some of the Sri Lankan rice varieties have greater nutrient densities, desirable physicochemical properties and functional properties (Abeysekera et al. 2017; Abeysekera and Premakumara 2016; Premakumara et al. 2013; Samaranayake et al. 2017). However, identification and differentiation of traditional and new improved rice varieties of Sri Lanka especially at the grain level is a great challenge due to their high diversity. There are number of reported studies on the use of morphological and molecular level characters (Bandara et al. 2017; Weerakoon and Somaratne 2021; Wijayawardhana et al. 2015) to differentiate Sri Lankan rice varieties at plant level. However, to date, none of the studies have attempted to identify Sri Lankan rice varieties at the grain level. Thus, the present study aimed to characterize widely cultivating traditional and new improved rice varieties of Sri Lanka at the grain level using a range of physical and chemical test methods. Materials and methods Chemicals and reagents Phenol, copper sulfate, ferrous sulfate, sodium hydroxide (NaOH) and potassium hydroxide (KOH) were obtained from Sigma Aldrich, USA and were of analytical grade. Sample collection Commercially important and widely cultivating ten traditional and fifteen new improved rice varieties were collected from Rice Research and Development Institute (RRDI), Batalagoda, Sri Lanka. The selected rice varieties were grown and harvested under experimental field conditions at RRDI, Batalagoda. The selected traditional rice varieties were Herath Banda (Ac 689), Kalu Heenati (Ac 721), Kahawanu (Ac 1319), Kurulu Thuda (Ac 69), Madathawalu (Ac 1312), Murungakayan (Ac 395), Pachchaperumal (Ac 798), Pokkali (Ac 809), Rathel (Ac 137) and Suwadel (Ac 579) while selected new improved rice varieties were Bg 300, Bg 352, At 362, At 311, At 307, At 308, Bg 360, Bg 358, Bg 94–1, Bg 366, Bw 367, Bg 379–2, Bg 403, Bg 450 and Bw 272-6b. Evaluation of grain size The grain sizes of the paddy seeds (n = 5 each) of selected rice varieties were determined according to the method described by Juliano (1985) and classified according to the Philippines National Standard (2019) for grading and classification for paddy and milled rice. Seed chemical properties of rice varieties Five chemical tests namely ferrous sulfate, phenol, modified phenol, NaOH and KOH tests were carried out for paddy of selected rice varieties of Sri Lanka and details of each method are described below. Ferrous sulphate test The ferrous sulphate test was carried out according to the method described by Vijayalakshmi and Vijay (2009). Fifty paddy seeds in four replicates (n = 4 each) were soaked in 1.5% (w/v) ­F eSO 4 solution for 4 h at ambient temperature (28 ± 2 °C). Then, excess moisture was removed using a blotting paper and seeds were examined for colour changes and grouped according to the Munsell Vegetos soil colour charts (Macbeth Division of Kollmorgen Instruments Corporation 1994). Phenol test The phenol test was carried out as per the methods described by Singh et al. (2017b) and Vijayalakshmi and Vijay (2009). Briefly, four replicates (n = 4 each) of 50 paddy seeds were pre-soaked in distilled water for 18 h at room temperature (28 ± 2 °C). Then, seeds were transferred to Petri dishes containing 2 layers of filter papers moistened with 4 ml of 2% (w/v) phenol solution. Petri dishes were covered and kept at room temperature (28 ± 2 °C), examined for colour change after 24 h and classified according to Munsell soil colour charts (Macbeth Division of Kollmorgen Instruments Corporation 1994) based on the intensity of seed coat colour. Modified phenol test The modified phenol test was carried out similar to the phenol test according to the methods of Singh et al. (2017b) and Vijayalakshmi and Vijay (2009) except paddy seeds (n = 4 each) were pre-soaked in 0.5% (w/v) C ­ uSO4 solution instead of distilled water. Then, based on the degree of staining of seed coat, rice varieties were grouped according to the Munsell soil colour charts (Macbeth Division of Kollmorgen Instruments Corporation 1994). KOH test The KOH test was carried out according to the methods described by Das et al. (2017), Singh et al. (2017b) and Vijayalakshmi and Vijay (2009). Four replications (n = 4 each) of 50 paddy seeds were soaked in 5% (w/v) KOH solution for 3 h at room temperature (28 ± 2 °C). Then, rice varieties were grouped according to Munsell soil colour charts (Macbeth Division of Kollmorgen Instruments Corporation 1994) based on the colour intensities of the soak solution. NaOH test The NaOH test was carried out as per the procedures described by Das et al. (2017); Singh et al. (2017b) and Vijayalakshmi and Vijay (2009). Fifty seeds were soaked in 5% (w/v) NaOH solution in four replications (n = 4 each) at room temperature (28 ± 2 °C) for 3 h and based on the colour intensity of the soak solution rice varieties were classified according to Munsell soil colour charts (Macbeth Division of Kollmorgen Instruments Corporation 1994). Statistical analysis The grain lengths of paddy samples were expressed as mean ± standard deviation (SD) of five replicates (n = 5 each). The physical and chemical characteristics of selected rice varieties were statistically analyzed by hierarchical cluster analysis using SPSS version 20 to examine the dissimilarities of the selected rice varieties. The clustering method used was Ward’s linkage and the measure of dissimilarity was based on Euclidean distance. Data were converted to unique type i.e., nominal data, prior to analysis. Results and discussion The present study attempted to distinguish selected twentyfive (25) Sri Lankan rice varieties at the grain level based on their physical and chemical characteristics. The selected rice varieties are commercially important and widely cultivating varieties in the country (Socio Economics and Planning Centre, Department of Agriculture 2019). As for physical characteristics, grain length and grain size were used. Grain size is one of the most stable properties of a rice variety (Juliano 1985) and one of the parameters that could be used to identify rice varieties at the grain level (Kumar et al. 2021). The results of grain lengths and sizes of the studied rice varieties of are presented in Table 1. Seed lengths of studied rice varieties varied from 5.8 to 10.1 mm. According to the grading and classification of paddy and milled rice by Philippines National Standard (2019), lengths of full size paddy seeds ≥ 9.9 mm, 9.8–8.8 mm, 8.7–8.0 mm and < 8.0 mm are classified as extra-long, long, medium and short grains respectively. Results of the present study clearly showed that most of the tested rice varieties were short grain rice varieties. Further, the studied rice varieties were able to group into four as extra-long, long, medium and short grain rice varieties. In a recent study by Kumar et al. 2021 has used grain size to characterize some of the rice varieties and was able to classify the rice varieties into two groups as medium and long. Chemical characterization of selected rice varieties based on color responses to 5 chemical tests namely ferrous sulfate, phenol, modified phenol, NaOH and KOH tests were used in this study. These chemical tests have been used in a number of research studies for varietal characterization of crops such as pigeon pea and mustard (Mathad et al. 2019; Rai et al. 2020). In addition, these tests have been used in the varietal characterization of different rice varieties the world over (Das et al. 2017; Kumar et al. 2021; Nagendra et al. 2020; Singh et al. 2017a, 2017b; Vijayalakshmi and Vijay 2009). Further, these chemical tests are recommended by the Association of Official Seed Analysts (AOSA) for Vegetos Table 1 Paddy seed length and size of selected rice varieties of Sri Lanka Rice variety Paddy seed length (mm) Paddy seed size Rathel Bw 367 Bg 358 Bg 450 Suwadel Kahawanu Bg 360 Bw 272-6b At 307 Madathawalu Bg 379–2 Pachchaperumal Bg 352 Bg 366 Kalu Heenati Bg 403 Bg 300 Herath Banda Murungakayan At 362 Pokkali At 308 Kurulu Thuda Bg 94–1 At 311 5.8 ± 0.1 5.9 ± 0.1 6.0 ± 0.0 6.0 ± 0.1 6.1 ± 0.1 6.3 ± 0.1 6.3 ± 0.1 6.7 ± 0.1 7.1 ± 0.1 7.3 ± 0.1 7.4 ± 0.1 7.5 ± 0.1 7.6 ± 0.0 7.7 ± 0.1 7.8 ± 0.1 7.8 ± 0.1 7.9 ± 0.1 8.0 ± 0.1 8.8 ± 0.2 8.9 ± 0.1 8.9 ± 0.1 9.1 ± 0.1 9.1 ± 0.0 9.3 ± 0.2 10.1 ± 0.2 Short Short Short Short Short Short Short Short Short Short Short Short Short Short Short Short Short Medium Long Long Long Long Long Long Extra long Paddy seed lengths were expressed as mean ± standard deviation of five replicates (n = 5 each); Extra-long: ≥ 9.9 mm, long: 9.8–8.8 mm, medium: 8.7–8.0 mm, short: < 8.0 mm cultivar purity testing of seeds of different crops including rice (Copeland and McDonald 2001). The individual color responses of each rice variety for ferrous sulfate, phenol, modified phenol, NaOH and KOH tests used in the present study are given in Fig. 1, 2, 3, 4a, b, respectively. Further, the summary of colour responses obtained for all the chemical tests used in the present study are given in Table 2. The ferrous sulfate test is a simple test which is used to differentiate genotypes based on the presence of secondary metabolites (Sripunitha and Sivasubramaniam 2014). The colour responses of studied rice varieties for the ferrous sulfate test are presented in Fig. 1. Only the traditional red rice variety, Kalu Heenati has shown “no colour change” to the ferrous sulfate test while the rest of the rice varieties have shown different color responses. Based on the colour responses, the selected rice varieties were able to be differentiated into four groups as rice varieties with no colour change, brown streaks, strong brown streaks and dark brown streaks (Table 2). According to the findings by Kumar et al. 2021, seventeen genotypes of rice they have studied were able to group into two using the ferrous sulfate test. Similarly, Vijayalakshmi and Vijay (2009) had grouped twenty-three rice varieties into three groups based on the ferrous sulfate test. The phenol test is based on a genetically controlled enzyme-based reaction (Kumar et al. 2021; Singh et al. 2017b; Sripunitha and Sivasubramaniam 2014) and therefore, unaffected by the environmental conditions (Kumar et al. 2021; Raju et al. 2017). In the phenol test, the aromatic ring of phenol gets oxidized into a pigmented compound known as melanin primarily by the catalytic activity of the tyrosinase enzyme present in the seed coat (Das et al. 2017; Singh et al. 2017a, b; Vijayalakshmi and Vijay 2009). The intensity of the colour reaction depends on the quality and quantity of the tyrosinase enzyme and therefore could be utilized as an index to distinguish crop varieties including rice (Das et al. 2017; Raju et al. 2017; Singh et al. 2017b). Different colour responses obtained for the phenol test of the studied rice varieties are shown in Fig. 2. Based on the color responses, 25 tested rice varieties were able to differentiated into five groups namely no colour change, strong brown, dark brown, reddish yellow and black (Table 2). The rice varieties that didn’t respond to the phenol test were Kahawanu and Suwadel, and those are traditional white rice varieties of Sri Lanka. The reason may be due to the inability of oxidizing the phenol ring due to a shortage of electron donors or hydroxylating enzyme in those varieties (Singh et al. 2017b). Similar results have been observed by Das et al. (2017), Singh et al. (2017b), Vijayalakshmi and Vijay (2009) for some of the rice varieties tested in their studies for varietal characterization using the same test method. The colour reaction of modified phenol test is based on the same principle as discussed in the phenol test method. Besides, ­Cu2+ ions used in the test may act as a co-factor in the reaction and enhance the colour reaction (Vijayalakshmi and Vijay 2009). In the present study, rice varieties were differentiated into five groups as no colour change, strong brown, dark brown, dark reddish brown and black (Table 2). The individual color responses of each variety to the modified phenol test are given in Fig. 3. Additionally, it is observed that the seed coat colour of some rice varieties has been enhanced due to the addition of ­Cu2SO4. Suwadel was the only rice variety which did not respond to the modified phenol test. The rice variety, Kahawanu which didn’t respond to the phenol test showed a dark brown colour in the modified phenol test. Similar kinds of results have been observed for different varieties of rice by Das et al. (2017), Singh et al. (2017a), Vijayalakshmi and Vijay (2009) in their studies. Therefore, our findings are in agreement with the previous research findings. The NaOH and KOH tests are also two common test methods that have been used in previous research studies Vegetos Fig. 1 Colour responses for the ferrous sulfate test of selected rice varieties of Sri Lanka. No colour change: Kalu Heenati; Brown Streaks (7.5YR 5/4: ): Kahawanu, Herath Banda, Murungakayan, At 307, At 308, Bg 94–1, At 362; Strong brown streaks (7.5YR 5/8:): Bw 272-6b, Bw 367, Bg 358, Bg 450, Bg 360, Bg 379–2, Bg 352, Bg 366, Bg 403, Bg 300; Dark brown Streaks (7.5YR 3/4: ): Madathawalu, Pachchaperumal, Suwadel, Pokkali, Kurulu Thuda, At 311 Vegetos Fig. 2 Colour responses for the phenol test of selected rice varieties of Sri Lanka. No colour change: Suwadel, Kahawanu; Strong Brown (7.5YR 5/6: ): Pachchaperumal, Herath Banda, Murungakayan, Kurulu Thuda, Bw 367, Bg 358, Bg 450, Bg 360, Bg 379–2, Bg 352, Bg 366, Bg 403, Bg 300, At 307, At 308, Bg 94–1; Dark brown (7.5YR 3/4: ): Rathel, Madathawalu, Pokkali; Reddish Yellow (5YR 6/6: ): Bw 272-6b, At 362, At 311; Black (7.5YR 2.5/1: ): Kalu Heenati Vegetos Fig. 3 Colour responses for the modified phenol test of selected rice varieties of Sri Lanka. No colour change: Suwadel; Strong Brown (7.5YR 5/6: ): Herath Banda; Dark brown (7.5YR 3/4: ): Kahawanu, Pachchaperumal, Murungakayan, Kurulu Thuda, Madathawalu, Pokkali, Bw 367, Bg 358, Bg 450, Bg 360, Bg 379–2, Bg 352, Bg 366, Bg 403, Bg 300, At 307, At 308, Bg 94–1; Dark Reddish Brown (5YR 3/4: ): Bw 272-6b, At 362, At 311; Black (7.5YR 2.5/1: ): Rathel, Kalu Heenati Vegetos to characterize rice varieties at grain level (Das et al. 2017; Kumar et al. 2021; Singh et al. 2017a; Sripunitha and Sivasubramaniam 2014; Vijayalakshmi and Vijay 2009). Both these test methods have been mainly used in distinguishing red seed varieties from white seed varieties (Kumar et al. 2021; Singh et al. 2017a; Sripunitha and Sivasubramaniam Vegetos ◂Fig. 4 a Colour responses for the NaOH test of selected rice varie- ties of Sri Lanka. Pale Yellow (5Y 8/4: ): 1—4; Yellow (5Y 8/8: ): 5—13; Olive Yellow (2.5Y 6/8: ): 14 and 15; Light Red (2.5YR 6/8: ): 16—19; Red (10R 4/8: ): 20 – 25. b Colour responses for the KOH test of selected rice varieties of Sri Lanka. Pale Yellow (5Y 4/8: ): 1—6; Yellow (5Y 8/8: ): 7—13; Olive Yellow (2.5Y 6/8: ): 14 and 15; Light Red (2.5YR 6/8: ): 20; Red (10R 4/8: ): 16—19, 21—23; Dark Red (10R 3/6: ): 24 and 25. Rice varieties named from 1 to 25 as follows; 1- Bg 450; 2- Bg 360; 3- Bg 352; 4- Bg 300; 5- At 307; 6- At 308; 7- Kahawanu; 8- Bw 367; 9- Bg 358; 10- Bg 379–2; 11- Bg 366; 12Bg 403; 13- Bg 94–1; 14- Rathel; 15- Suwadel; 16- Madathawalu; 17- Kalu Heenati; 18- Murungakayan; 19- Hearth Banda; 20- At 362; 21- Pachchaperumal; 22- Bw 272-6b; 23- At 311; 24- Pokkali; 25Kurulu Thuda 2014). The reason for the colour reactions in NaOH and KOH tests is still not well understood (Nagendra et al. 2020). However, it is reported that variations in colour may be due to inherent chemical differences, the genetic makeup of enzyme systems or the reaction of secondary metabolites present in the seeds of different crops (Kumar et al. 2021; Singh et al. 2017a, b; Sripunitha and Sivasubramaniam 2014). The colour responses of studied rice varieties for NaOH and KOH tests are presented in Fig. 4a, b respectively. Based on the colour intensities in NaOH test, 25 selected rice varieties were able to be distinctly categorized into five as pale yellow, yellow, olive yellow, light red and red (Table 2). On the other hand, the colour intensities obtained for the KOH test for selected rice varieties were able to group the rice varieties into six as pale yellow, yellow, olive yellow, light red, red and dark red. Similar findings have been observed by a number of researchers for their tested rice varieties (Das et al. 2017; Kumar et al. 2021; Singh et al. 2017a; Sripunitha and Sivasubramaniam 2014; Vijayalakshmi and Vijay 2009). Thus, our findings are in agreement with the previous research findings. As none of the physical and chemical test methods alone were able to characterize selected rice varieties at grain level, the suitability of a combination of physical and chemical test methods were tested in hierarchical cluster analysis and results are presented in Fig. 5. Results showed two main clusters (C I and C II) at 15 rescaled distance units [Line PQ in Fig. 5]. Cluster I comprised of 14 rice varieties (Bw 367, Bg 358, Bg 360, Bg 450, Kahawanu, At 307, Bg 300, Bg 352, Bg 403, Bg 366, Bg 379–2, At 308, Bg 94-1and Suwadel) which have been clustered into three groups of rice having similar characteristics (Group 1, 2 and 3 in Fig. 5) and one rice variety (Suwadel) identified at grain level. All the rice varieties in Cluster I were non-pigmented (white) rice varieties and 85% of them were short grain varieties. Further, 85% of the rice varieties showed strong brown colour for the phenol test, 93% showed dark brown colour for the modified phenol test, 64% showed strong brown streaks for the ferrous sulphate test and 93% showed pale yellow/ yellow colour for the KOH and NaOH tests. Cluster II comprised of 11 rice varieties (Rathel, Kalu Heenati, Herath Banda, Murungakayan, Pokkali, Kurulu Thuda, At 362, At 311, Madathawalu, Pachchaperumal, Bw 272-6b, Rathel and Kalu Heenati) which have been clustered into four groups of rice having similar characteristics (Group 4, 5, 6 and 7 in Fig. 5) and two rice varieties (Rathel and Kalu Heenati) identified at grain level. Results showed that 91% of the rice varieties in Cluster II were pigmented rice varieties and 55% of them were medium to long/extra-long rice varieties. For the KOH test, 91% of the rice varieties showed light red/ red/dark red colour while 91% of the rice varieties showed light red/red colour for the NaOH test. Moreover, 55% of the rice varieties showed dark brown streaks for the ferrous sulphate test. In the comparison of traditional and new improved rice varieties, no drastically different features were observed among the varieties for the studied physical and chemical tests. Among the studied traditional rice varieties, 80% of the rice varieties belonged to Cluster II. Further, 70% of the rice varieties were pigmented rice varieties. Furthermore, 60%, 10% and 30% were small, medium and long grain rice varieties respectively. For the KOH test, 70% of the rice varieties showed red/dark red colour. Similarly, 70% of the rice varieties showed light red/ red colour for the NaOH test. Further, 90% of the rice varieties showed brown/ dark brown streaks for the ferrous sulphate test. In contrast, among the studied new improved rice varieties, 86% of the rice varieties belonged to Cluster I and mainly resemble the characteristic features belonging to Cluster I. Further, 80% of the studied new improved rice varieties were non-pigmented and 73% were small grain varieties while 27% of the rice varieties were long/extra-long grains. Additionally, 80% of the rice varieties showed strong brown colour for the phenol test, 80% showed dark brown colour for the modified phenol test, 67% showed strong brown streaks for the ferrous sulfate test and 80% showed pale yellow/ yellow colour for the KOH and NaOH tests. Considering all, it’s very clear that when the diversity of crops is high, individual or combination of physical and chemical test methods could be combined with other advanced varietal identification methods for grain level characterization of rice. Conclusion None of the chemical (ferrous sulphate, phenol, modified phenol, NaOH, and KOH tests) or physical test (grain length and size) methods alone used in the present study could be used to identify the studied Sri Lankan rice varieties at the grain level. The combination of chemical and physical test methods allowed characterizing three rice varieties namely DBS SBS SBS SBS DBS BS SBS SBS BS DBS SBS DBS SBS SBS NCC SBS SBS BS BS BS DBS BS DBS BS DBS 7.5YR 3/4 7.5YR 5/8 7.5YR 5/8 7.5YR 5/8 7.5YR 3/4 7.5YR 5/4 7.5YR 5/8 7.5YR 5/8 7.5YR 5/4 7.5YR 3/4 7.5YR 5/8 7.5YR 3/4 7.5YR 5/8 7.5YR 5/8 7.5YR 5/8 7.5YR 5/8 7.5YR 5/4 7.5YR 5/4 7.5YR 5/4 7.5YR 3/4 7.5YR 5/4 7.5YR 3/4 7.5YR 5/4 7.5YR 3/4 DB SB SB SB NCC NCC SB SB SB DB SB SB SB SB B SB SB SB SB RY DB SB SB SB RY Colour Response Colour Response Munsell value Phenol test Ferrous sulfate test 7.5YR 3/4 7.5YR 5/6 7.5YR 5/6 7.5YR 5/6 – – 7.5YR 5/6 5YR 6/6 7.5YR 5/6 7.5YR 3/4 7.5YR 5/6 7.5YR 5/6 7.5YR 5/6 7.5YR 5/6 7.5YR 2.5/1 7.5YR 5/6 7.5YR 5/6 7.5YR 5/6 7.5YR 5/6 5YR 6/6 7.5YR 3/4 7.5YR 5/6 7.5YR 5/6 7.5YR 5/6 5YR 6/6 Munsell value B DB DB DB NCC DB DB DRB DB DB DB DB DB DB B DB DB SB DB DRB DB DB DB DB DRB Colour Response 7.5YR 2.5/1 7.5YR 3/4 7.5YR 3/4 7.5YR 3/4 – 7.5YR 3/4 7.5YR 3/4 5YR 3/4 7.5YR 3/4 7.5YR 3/4 7.5YR 3/4 7.5YR 3/4 7.5YR 3/4 7.5YR 3/4 10YR 2/1 7.5YR 3/4 7.5YR 3/4 7.5YR 5/6 7.5YR 3/4 5YR 3/4 7.5YR 3/4 7.5YR 3/4 7.5YR 3/4 7.5YR 3/4 5YR 3/4 Munsell value Modified phenol test OY Y Y PY OY Y PY R Y LR Y R PY Y LR Y PY LR LR R R Y R Y R Colour Response NaOH test 2.5Y 6/8 5Y 8/6 5Y 8/6 5Y 8/4 2.5Y 6/8 5Y 8/6 5Y 8/4 10R 4/8 5Y 8/6 2.5YR 6/8 5Y 8/6 10R 4/8 5Y 8/4 5Y 8/6 2.5YR 6/8 5Y 8/6 5Y 8/4 2.5YR 6/8 2.5YR 6/8 10R 4/8 10R 4/8 5Y 8/6 10R 4/8 5Y 8/6 10R 4/8 Munsell value OY Y Y PY OY Y PY R PY R Y R PY Y R Y PY R R LR DR PY DR Y R Colour Response KOH test 2.5Y 6/8 5Y 8/6 5Y 8/6 5Y 8/4 2.5Y 6/8 5Y 8/6 5Y 8/4 10R 4/8 5Y 8/4 10R 4/8 5Y 8/6 10R 4/8 5Y 8/4 5Y 8/6 10R 4/8 5Y 8/6 5Y 8/4 10R 4/8 10R 4/8 2.5YR 6/8 10R 3/6 5Y 8/4 10R 3/6 5Y 8/6 10R 4/8 Munsell value DBS, Dark Brown Streaks; SBS: Strong Brown Streaks; BS, Brown Streaks; NCC, No Colour Change; B, Black; RY, Reddish Yellow; DB, Dark Brown; SB, Strong Brown; DRB, Dark Reddish Brown; PY, Pale Yellow; Y, Yellow; OY, Olive Yellow; LR, Light Red; R, Red; DR, Dark Red Rathel Bw 367 Bg 358 Bg 450 Suwadel Kahawanu Bg 360 Bw 272-6b At 307 Madathawalu Bg 379–2 Pachchaperumal Bg 352 Bg 366 Kalu Heenati Bg 403 Bg 300 Herath Banda Murungakayan At 362 Pokkali At 308 Kurulu Thuda Bg 94–1 At 311 Rice variety Table 2 Colour responses of selected rice varieties of Sri Lanka for studied chemical test methods Vegetos Vegetos Fig. 5 Dendrogram for tested physical and chemical properties of selected rice varieties of Sri Lanka using hierarchical cluster analysis Rathel, Suwadel and Kalu Heenati at the grain level. Other selected rice varieties were able to categorize into seven groups of rice having similar characteristics. Thus, selected physical and chemical tests need to be coupled with other varietal identification methods for grain level characterization of Sri Lankan rice varieties. Acknowledgements The authors gratefully acknowledge the financial support given by the Treasury, Sri Lanka (Grant No.TG 18/146). Data availability The data generated in this study are available from the corresponding author on reasonable request. Declarations Conflict of interest The authors declare no conflict of interest. References Abeysekera WKSM, Premakumara GAS (2016) Health food properties of traditional rice in Sri Lanka. LAP Lambert Academic Publishing, Germany Abeysekera WKSM, Arachchige SPG, Ratnasooriya WD, Chandrasekharan NV, Bentota AP (2017) Physicochemical and nutritional properties of twenty-three traditional rice (Oryza sativa L.) varieties of Sri Lanka. 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