Chapter 1 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Eye protection should be worn at all times. Practical 1.1 A: Calibrating an eyepiece graticule B: Preparing a slide of onion epidermal cells It is recommended that a ready-made solution of 2% iodine in potassium iodide is purchased. The ready-made solution is low hazard. Practical 1.2 Preparing a slide of human cheek cells It is recommended that a ready-made solution of 0.1% methylene blue is purchased. The ready-made solution is low hazard. Cotton buds, slides and cover slips should all be transferred to a 5% bleach (sodium hypochlorite) solution immediately after use, and left there for at least 15 minutes. Alternatively, domestic chlorinebased bleach can be used. This will usually have a concentration of less than 5% and therefore, a lower hazard rating. It should be labelled ‘irritant’. Slides and cover slips can then be washed for reuse, following normal procedure. Used cotton buds, once disinfected, can be disposed of in a sealed bag with the normal refuse. Practical 1.3 Preparing a slide of Elodea leaf cells It is recommended that a ready-made solution of 2% iodine in potassium iodide is purchased. The ready-made solution is low hazard. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 If Elodea is not available, teachers can find a suitable locally available species of aquatic plant. An alternative is to use leaves of moss plants. Practical 1.4 Preparing slides of potato tubers and banana fruit to investigate starch grains It is recommended that a ready-made solution of 2% iodine in potassium iodide is purchased. The ready-made solution is low hazard. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 1.1 A: Calibrating an eyepiece graticule B: Preparing a slide of onion epidermal cells Safety Wear eye protection. Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • • • • microscope eyepiece graticule stage micrometer sharp knife or scalpel small onion (Allium cepa) slides and cover slips • • • • • • forceps mounted needle 2% iodine in potassium iodide solution dropping pipette filter paper eye protection Introduction In this practical, you will: • calibrate an eyepiece graticule • make a temporary preparation of some onion epidermal cells • stain the cells so that you can see structures within them • set up a light microscope and use it to make observations and measurements • make a drawing of the onion cells • use the eyepiece graticule you calibrated to measure the size of the cells. Procedure A Calibrating an eyepiece graticule 1 If it does not already have one, insert a graticule into the eyepiece of the microscope by unscrewing the top lens, resting the graticule on the rim halfway down and replacing the top lens. 2 Place a stage micrometer slide on the stage of the microscope. The smallest division on the stage micrometer equals 100 m. 3 Using the low-power objective, focus the microscope on the stage micrometer. Rotate the eyepiece and move the slide to superimpose the scales of the eyepiece graticule and the stage micrometer (shown in the diagram on the next page). Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 Count the number of divisions on the eyepiece graticule equivalent to 100 m on the stage micrometer and then calculate the length that one eyepiece division is equivalent to. For example, if three divisions are equal to 100 m, then each division is equal to 33.3 m at low power. Record your answer. 5 Repeat step 4 for the medium-power and high-power objectives. You have now calibrated the eyepiece graticule and you can use it to measure cells in the preparation below, or in the preparations in the next practicals. B Preparing a slide of onion epidermal cells 1 The fleshy layers inside an onion are known as ‘leaves’ and store nutrients. Cut open an onion and separate some of the leaves. Peel off one of the thin layers of epidermal tissue from the inner concave surface of a leaf and transfer it to a drop of water on a microscope slide. Use forceps and a mounted needle to make sure that the tissue is not folded. 2 Place two drops of iodine solution onto the tissue. Gently lower a coverslip onto the slide using a mounted needle. Use a piece of filter paper to absorb excess stain. Place some filter paper over the coverslip and gently press to flatten the specimen. 3 Place the slide on the stage of the microscope and use the low-power objective to locate the cells. Now use the high-power objective to select three adjacent cells that are clearly visible in your field of view. 4 Make a large, labelled drawing of these three epidermal cells. Use a sharp pencil (HB) and a ruler to draw the label lines and labels. 5 Use the eyepiece graticule to measure the length of one of the epidermal cells that you have drawn. Now measure the same cell in your drawing. 6 Calculate the magnification of your drawing, using the formula: magnification = length of drawing of cell actual length of cell Remember that both lengths must be measured in the same units, e.g. micrometres (m). Write the magnification underneath your drawing. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 1.2 Preparing a slide of human cheek cells Safety Wear eye protection. Take care when using sharps. The disinfectant is an irritant. If it contacts the skin, wash off immediately with plenty of water. Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • • • • microscope calibrated eyepiece graticule slides and cover slips forceps mounted needle dropping pipette • • • • • filter paper cotton bud small beaker of disinfectant 0.1% methylene blue solution eye protection Introduction In this practical, you will: • make a temporary preparation of human cheek cells • stain the cells so that you can see structures within them • set up a light microscope and use it to make observations and measurements • make a drawing of the cheek cells • use an eyepiece graticule to measure the size of the cells. Procedure 1 Use a clean cotton bud to gently scrape some material from the lining inside one of your cheeks. Smear the material onto a clean dry slide and immediately put the cotton bud into a beaker of disinfectant. 2 Place two drops of methylene blue solution onto the material on the slide. Place a cover slip over the stain and lower the cover slip gently onto the specimen using a mounted needle. Use a piece of filter paper to absorb excess stain. Place some filter paper over the cover slip and gently press to flatten the specimen. 3 Place the slide on the stage of the microscope and use the high-power objective to select three cells that are clearly visible in your field of view. Make a large, labelled drawing of these cells. 4 Use the eyepiece graticule that you calibrated in Practical 1.1 to measure the diameter of one of the cells that you have drawn. Now measure the same cell in your drawing. Calculate the magnification of your drawing, using the formula: Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 1 magnification = length of drawing of cell actual length of cell Remember that both lengths must be measured in the same units e.g. micrometres, (m). Write the magnification underneath your drawing. 5 When you have finished with your slide, place it in the beaker of disinfectant. Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 2 Practical 1.3 Preparing a slide of Elodea leaf cells Safety Wear eye protection. Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • • • • microscope calibrated eyepiece graticule scalpel piece of Elodea plant (Canadian pondweed) slides and cover slips forceps • • • • • • mounted needle dropping pipette distilled water 2% iodine in potassium iodide solution filter paper eye protection Introduction In this practical, you will: • make a temporary preparation of Elodea leaf cells • set up a light microscope and use it to make observations and measurements • make a drawing of the leaf cells • use an eyepiece graticule to measure the size of the cells. Procedure 1 Use forceps to remove a single leaf from a piece of Elodea canadensis plant. Place the leaf on a clean microscope slide and cut a small square of the leaf using a sharp scalpel. Elodea leaves are a curled shape and it is important to prepare a flat piece of leaf to use in the preparation: it should be about 3 mm wide. Try to use the edge of a leaf, avoiding the thicker midrib. 2 Transfer the piece of leaf to another microscope slide. Add two drops of distilled water to the specimen. Place a cover slip over the water and lower it gently onto the specimen using a mounted needle. Use a piece of filter paper to absorb excess water. The cover slip must lie flat. 3 Observe the specimen under the microscope, using low-power, medium-power and then highpower objectives. Select an area where cells are clearly visible. You should be able to see the cell walls and many chloroplasts. More chloroplasts will be visible around the edges of the cells, just inside the cell walls. This is because the middle of each cell is occupied by the sap vacuole. If you watch a cell for a few minutes, you may see the chloroplasts moving in the cell as a result of cytoplasmic streaming. (Under the microscope this appears faster than normal, due to the extra kinetic energy provided by the heat from the lamp.) 4 It is difficult to see nuclei in unstained leaf cells. You could try staining the cells with iodine to show up the nuclei. Repeat steps 1–3 using iodine solution instead of water. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 5 Use the high-power objective to select a few leaf cells. Make a large, labelled drawing of these cells. Use the eyepiece graticule that you calibrated in Practical 1.1 to measure the length of one of the cells that you have drawn. Now measure the length of this cell in your drawing. 6 Calculate the magnification of your drawing, using the formula: length of drawing of cell actual length of cell Remember that both lengths must be measured in the same units, e.g. micrometres (m). Write the magnification underneath your drawing. magnification = Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 1.4 Preparing slides of potato tubers and banana fruit to investigate starch grains Safety Wear eye protection. Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • • • • • microscope calibrated eyepiece graticule scalpel potato tuber (Solanum tuberosum) banana fruit (Musa sp.) slides and cover slips forceps • • • • • • mounted needle dropping pipette distilled water 2% iodine in potassium iodide solution filter paper eye protection Introduction In this practical, you will: • make a temporary preparation of cells from a potato tuber and a banana to show starch grains • set up a light microscope and use it to make observations and measurements • stain the starch grains using the irrigation technique • make a drawing of the cells • use an eyepiece graticule to measure the size of the starch grains. Procedure 1 Use a mounted needle or a scalpel to scrape some tissue from the cut surface of a potato. Place the tissue on a clean microscope slide and add two drops of distilled water. Place a cover slip over the water and lower it gently onto the specimen using a mounted needle. Use a piece of filter paper to absorb excess water. 2 Observe the potato cells under the high-power objective of the microscope. You should see the cell walls of the potato cells. Each cell contains a number of rounded starch grains, called amyloplasts. 3 Stain the starch grains with iodine solution using a technique called irrigation (see diagram on the next page). Place a drop of iodine solution on the slide so that it touches the edge of the cover slip. Use a piece of filter paper to draw the iodine across the slide under the cover slip, by touching the edge of the cover slip on the side opposite the iodine. The starch grains will stain blue with the iodine. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 Use the high-power objective to select a few potato tuber cells. Make a large, labelled drawing of these cells and their starch grains. Use the eyepiece graticule calibrated in Practical 1.1 to measure the length of one of the cells that you have drawn. Now measure the length of this cell in your drawing. 5 Calculate the magnification of your drawing, using the formula: magnification = length of drawing of cell actual length of cell Remember that both lengths must be measured in the same units, e.g. micrometres (m). Write the magnification underneath your drawing. 6 Repeat steps 1–5 using tissue from the middle of a banana fruit, which also contains starch. Compare the shape of the grains in the two tissues. Starch grains in banana are more elongated in shape than those in potato. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 2 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Eye protection should be worn at all times. Practical 2.1 Tests for biological molecules It is recommended that ready-made solutions of 2% iodine in potassium iodide, Benedict’s solution and biuret reagent are purchased. The ready-made solutions are low hazard. Sodium hydroxide solution is an irritant, and hazardous to eyes even at low concentrations. Ethanol and its vapour are highly flammable – keep them well away from sources of ignition. In the Benedict’s test, tubes should be heated in a thermostatic water bath or in a beaker of water above a Bunsen burner. They should not be heated directly in a Bunsen flame, which is likely to cause the contents to jump out of the tube. Using a thermostatic water bath avoids the need to use a Bunsen burner altogether. The test will work at temperatures just below boiling point, so for added safety the electric water bath could be maintained at 90 °C. The sucrose should be uncontaminated with glucose. Use analytical reagent (AR) sucrose rather than granulated sugar. The biuret test only works on soluble proteins. If separate biuret solutions are used, students should note the darker blue colour produced when the two solutions are mixed, which is not to be confused with the lilac colour of a positive biuret test. The iodine test for starch only works with amylose, where the helices of amylose trap the iodine molecules forming a blue–black compound. It does not work with amylopectin, which is composed of much shorter helices that are unable to trap the iodine. Iodine will also stain glycogen, but the colour produced is a dark red–brown. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 2.2 Identifying three biological molecules It is recommended that ready-made solutions of 2% iodine in potassium iodide, Benedict’s solution and biuret reagent are purchased. The ready-made solutions are low hazard. Risk assessment should consider the problem of allergic responses to enzymes. The tubes should be set up as follows: • 30 cm3 of 0.1% starch solution in tube A • 30 cm3 of 1% sucrose solution in tube B • 30 cm3 of 1% sucrase solution in tube C. Both sucrase and sucrose solutions should be uncontaminated with glucose. Use AR sucrose rather than granulated sugar, and pure sucrase rather than invertase. Students should use the reagents to identify A as starch, B as non-reducing sugar and C as protein. C is therefore the enzyme. If students mix C (sucrase) with B and test the mixture for reducing sugars, the test should be positive due to the hydrolysis of the sucrose into glucose and fructose. If students then mix A and C, and test the mixture for presence of reducing sugars, the test will be negative, confirming that C is not amylase. Practical 2.3 Semi-quantitative and quantitative tests for reducing sugars It is recommended that a ready-made Benedict’s solution is purchased. The ready-made solution is low hazard. The unknown glucose solutions should be selected so that they are within the range of the measured standards. Students will probably need a second lesson to complete part C. It is only possible to carry out this assay on a limited range of glucose concentrations. This is an extension activity to test more able students, particularly in step 5. The absorbance scale on the colorimeter must be used. The colorimeter should be zeroed with the blank (that is, the filtrate from the 2.5% glucose solution) each time a reading is taken. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 2.1 Tests for biological molecules Safety Wear eye protection. Take care when using heating apparatus. Dilute sodium hydroxide solution is an irritant. If it contacts the skin, wash off immediately with plenty of water. Ethanol is highly flammable. Keep it well away from sources of ignition. Apparatus and materials • • • • • • • • • • six test tubes test tube rack labels or marker pen thermostatically controlled water bath at 100 °C thermometer test tube holder dropping pipettes spotting tile 10 cm3 of 0.1% starch solution 10 cm3 of 1% glucose solution • • • • • • • • • • 20 cm3 of 1% sucrose solution 5 cm3 of 1% protein solution (e.g. albumin) a few drops of vegetable oil, e.g. olive oil or cooking oil 2% iodine in potassium iodide solution Benedict’s solution 0.1 mol dm–3 sodium hydroxide solution 0.1 mol dm–3 hydrochloric acid biuret reagent (or separate biuret solutions) ethanol (or methylated spirits) eye protection Introduction In this practical, you will: • carry out tests for starch, reducing sugar, non-reducing sugar, protein and lipid. Procedure 1 Carry out the tests for biological molecules shown in the table overleaf. 2 With the sucrose solution, try the reducing sugar test on the solution first, followed by the test for non-reducing sugar. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Tests for biological molecules Molecule Test Result if test is positive (and explanation) Starch Using a pipette, place a drop of starch solution in a depression in a spotting tile. Add a drop of iodine solution. A blue–black colour is formed. Place about 10 cm3 of glucose solution in a test tube. Add a few drops of Benedict’s solution. Stand the tube in the water bath at 100 °C. A brick-red precipitate is formed. Reducing sugar (glucose) A coloured polyiodide complex is formed with starch. The reducing sugar reduces the copper(II) ions in the Benedict’s to copper(I) oxide. (If a lower concentration of reducing sugar is used, the colour may be green, yellow or orange.) Nonreducing sugar (sucrose) Place about 10 cm3 of sucrose solution in a test tube. Add three drops of dilute hydrochloric acid. Shake the tube and place it in the water bath at 100 °C for 5 minutes. Remove the tube and allow it to cool. Add three drops of dilute sodium hydroxide solution and mix, to neutralise the acid. A brick-red precipitate is formed. The acid hydrolyses the sucrose into glucose and fructose, which both give a positive Benedict’s test. Repeat the reducing sugar test as above. Protein Lipid Place about 5 cm3 of protein solution in a test tube. Add an equal volume of biuret reagent. A lilac (mauve) solution is formed. Place one drop of vegetable oil in a clean, dry test tube. Add about 5 cm3 of ethanol and shake thoroughly to dissolve the oil. Pour the mixture into a test tube three-quarters filled with cold water. A white emulsion is formed on the surface of the water. Nitrogen atoms in the peptide bonds of the protein form a lilac complex with copper(II) ions in the biuret reagent. The alcohol mixes with the water, leaving the lipid to form an emulsion of microscopic droplets suspended at the surface. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 2.2 Identifying three biological molecules Safety Wear eye protection. Take care when using heating apparatus. Dilute sodium hydroxide solution is an irritant. If it contacts the skin, wash off immediately with plenty of water. Apparatus and materials • • • • • • • • eight test tubes test-tube rack labels or marker pen thermostatically controlled water bath maintained at 100 °C thermometer test-tube holder three dropping pipettes spotting tile • • • • • • • • three tubes, labelled A, B and C, each containing 30 cm3 of a different unknown solution 2% iodine in potassium iodide solution Benedict’s solution 0.1 mol dm–3 sodium hydroxide 0.1 mol dm–3 hydrochloric acid biuret solution (or separate biuret solutions) eye protection pH paper Introduction In this practical, you will: • identify which of three solutions A, B and C is an enzyme • identify the other two solutions of different carbohydrates. You are provided with three solutions labelled A, B and C. One of the solutions is an enzyme. The other two are solutions of different carbohydrates, one of which is the substrate for the enzyme. Procedure 1 Identify each solution using the reagents provided. 2 Present the results that you obtain in a suitable format. 3 When you have found out which solution is the enzyme, investigate the effect of the enzyme on each of the two carbohydrate solutions. 4 State your conclusions and how you arrived at them. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 2.3 Semi-quantitative and quantitative tests for reducing sugars Safety Wear eye protection. Take care when using heating apparatus. Apparatus and materials • • • • • • • • • • 15 boiling tubes test-tube rack 10 cm3 syringes 5 cm3 syringes 1 cm3 syringes distilled water thermostatically controlled water bath maintained at 75 °C six small beakers filter funnel filter paper • • • • • • • • • • • coloured pencils stopwatch colorimeter and cuvettes 50 cm3 of 10% glucose solution Benedict’s solution 20 cm3 of lemon juice 20 cm3 of unknown glucose solution, labelled A 20 cm3 of unknown glucose solution, labelled B eye protection pipettes labels or marker pen Introduction In this practical, you will: • make a serial dilution of glucose • test the different concentrations of glucose with Benedict’s solution • make a colour chart • use your colour chart to estimate the concentration of reducing sugar in some unknown solutions • use a colorimeter to increase the sensitivity of the reducing sugar test. Procedure It is important to avoid contamination of solutions. Use a clean syringe for measuring out volumes of different solutions. A Making a serial dilution of glucose 1 Label five boiling tubes 1 to 5. Using a 10 cm3 syringe, place 10.0 cm3 of 10% glucose solution in tube 1. 2 Using a 1 cm3 syringe, take 1.0 cm3 of the solution from tube 1 and transfer it to tube 2. Using a 10 cm3 syringe, add 9.0 cm3 of distilled water to tube 2 and mix the contents. The 1.0 cm3 of 10% glucose solution has now been diluted ten times to make a 1% solution. 3 Repeat step 2, diluting the 1% solution in tube 2, to produce a 0.1% solution in tube 3. Repeat the process with tubes 4 and 5. Tubes 1 to 5 now contain a serial dilution of the original glucose solution, with the following concentrations: 10%, 1%, 0.1%, 0.01% and 0.001%. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 Tubes 1 to 4 have only 9.0 cm3 of solution left in them, but tube 5 has 10.0 cm3. Remove 1.0 cm3 of solution from tube 5 so that, for the Benedict’s test, all tubes start with the same volume of solution. 5 Using a syringe, add 5.0 cm3 of Benedict’s solution to each tube, and place the tubes in a water bath at 75 °C for 9 minutes. 6 Remove the tubes from the water bath and return them to the test-tube rack. Use coloured pencils to make a chart of the colours. B Estimating the concentration of reducing sugar in some unknown solutions 1 Into three separate boiling tubes place 9.0 cm3 of either unknown solution A, unknown solution B or the lemon juice. Label the tubes. 2 Add 5.0 cm3 of Benedict’s solution to each of the three tubes and heat in the water bath at 75 °C for 9 minutes as in part A. 3 Compare the colours of the three tubes with those obtained from part A and estimate the concentrations of reducing sugar present. C Extension: using a colorimeter to increase the sensitivity of the Benedict’s test 1 Make up a series of dilutions of the 10% glucose solution, of concentrations 0%, 0.5%, 1.0%, 1.5%, 2.0% and 2.5%, using distilled water. It is best to construct a table first to show how you will make these dilutions. Have the table checked before you carry on. 2 Transfer 0.5 cm3 of each of your solutions to a labelled boiling tube, and add 5.0 cm3 of Benedict’s solution to each tube. Place all the tubes in the water bath at 75 °C for 5 minutes. 3 Remove the tubes from the water bath and filter the contents of each tube into a clean, labelled test tube. Using a pipette, transfer some of each filtrate to labelled colorimeter cuvettes. 4 Using an orange filter in the colorimeter, place the cuvette containing the filtrate from the 2.5% solution into the colorimeter. Set the colorimeter to zero absorbance using this solution. Now read the absorbance of the other filtrates. 5 Process your results so that you could use the information to determine the concentration of glucose in an unknown solution. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 3 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Enzymes in powdered form (i.e. if the teacher or technician makes up the solution) are harmful. They are irritating to the eyes, there is a risk of serious damage to the eyes, and they may cause sensitisation by inhalation. Enzyme solutions equal to or stronger than 1% (w/v) are irritants. Enzyme solutions less than 1% (w/v) are low hazards. The risk assessment should consider the problem of allergic responses to enzymes. Eye protection should be worn at all times. Practical 3.1 amylase Following the course of an enzyme-catalysed reaction using It is recommended that a ready-made solution of 2% iodine in potassium iodide is purchased. The ready-made solution is low hazard. If time is short, you can carry out part A before the lesson and give students the results to enable them to plot a standard curve. Practical 3.2 Investigating the effect of temperature on the activity of trypsin The denaturation of trypsin at high temperatures can be investigated further by exposing trypsin solution to high temperatures (60 °C or 70 °C work well) for different periods of time. A suitable range of times is 1, 2, 3, 5, 10 and 15 minutes. If the trypsin is cooled to room temperature after this heat treatment, its remaining activity can be found using the method described. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 This investigation can also be modified to find the effect of dilute copper(II) sulfate solution on the activity of trypsin. Copper(II) ions act as a non-competitive inhibitor of many enzymes, including trypsin. The students can be provided with a serial dilution of copper sulfate, in the range 0.1 mol dm−3 to 0.1 mmol dm−3. Addition of 1.0 cm3 of 0.1 mol dm–3 copper sulfate will completely denature the trypsin, resulting in zero activity. Lower concentrations will reduce the activity compared with a control treated with 1.0 cm3 of distilled water. All solutions should be equilibrated to 40 °C, before mixing and maintaining at this temperature. The turbidity of the solutions can be compared with the end-point colour standard, which should be made up with 5.0 cm3 of milk suspension plus 5.0 cm3 of dilute hydrochloric acid and 1.0 cm3 of the corresponding dilution of copper sulfate. If the teacher makes up the copper(II) sulfate solution, note that the solid is harmful if swallowed, irritating to eyes and skin, and very toxic to aquatic organisms (dilute with large volumes of water for disposal). Practical 3.3 of catalase Investigating the effect of substrate concentration on the activity The 2.5 mol dm–3 hydrogen peroxide solution should be labelled ‘harmful’. It is harmful if swallowed, and can cause serious damage to eyes. Practical 3.4A Investigating the effect of enzyme concentration on the activity of rennin Practical 3.4B Developing a procedure to investigate the effect of enzyme concentration on the activity of rennin Chapter P1 in the Coursebook features this investigation. Teachers might like to use this practical to introduce their students to many of the key practical skills for the course. Practical 3.4A includes a full set of instructions for the investigation. Practical 3.4B is a second version of the same investigation, which gives students an opportunity to make their own decisions about some aspects of the procedure and presentation of results. If students read the relevant parts of Chapter P1 before doing this version, they should be able to make these decisions. It would also be a good idea if they have the Coursebook available as they carry out the practical. Rennin can be purchased cheaply from supermarkets, pharmacies or health food shops in the form of rennet – a liquid derived from the stomachs of young calves. Rennet contains several proteolytic enzymes, including rennin. An alternative is to use powdered rennin, which should be supplied as a 1% solution. If not available locally, liquid rennet and powdered rennin are both available from scientific supply companies; rennet is also available from companies that supply domestic cheese-makers. In the past, the only source of rennin was the stomachs of calves; now non-animal (vegetarian) rennet is produced from genetically modified microorganisms such as yeast. Liquid and solid forms are available. If a solid form is used, start with a 1% stock solution. Concentrations of rennin in rennet vary considerably, so it is advisable to trial the method using different dilutions before using this practical with students. Fresh, pasteurised full fat (3%) milk is the best substrate to use but the Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 practical will also work with powdered milk and other forms of milk. Again, trialling is important to make sure the students can achieve a suitable end point. Practical 3.5 The hydrolysis of a protein by pepsin Dilute hydrochloric acid should be labelled ‘irritant’. Practical 3.6 Investigating the effect of pH on the activity of amylase Iodine solution (iodine in potassium iodide) at a concentration of less than 0.1 mol dm–3 is low hazard, so it is recommended that a ready-made solution stock solution of this concentration is purchased. Make a 10-fold dilution of the stock solution. Make a fresh 1% starch solution by mixing 5 g of soluble starch with cold water and dissolving the paste in 500 cm3 of boiling water. Continue boiling until the solution is clear, and allow to cool. Make a fresh solution of 1% amylase. The enzyme loses activity with storage. The optimum pH for amylase activity is about pH6. Using the suggested volumes and concentrations of reactants, complete digestion of the starch at pH6 should take about a minute. Check that this is the case before the practical, and if the reaction is too slow or too fast, change the concentration of enzyme to achieve a reasonable time for completion of the reaction. Practical 3.7 catalase Following the course of an enzyme-catalysed reaction, using The 2.5 mol dm–3 hydrogen peroxide solution should be labelled ‘harmful’. It is harmful if swallowed, and can cause serious damage to eyes. The concentrations of yeast and hydrogen peroxide may need to be adjusted to achieve suitable results. The technician or teacher can carry out some preliminary experiments before the lesson for this purpose. Practical 3.8 sucrase Following the course of an enzyme-catalysed reaction, using If the teacher is making up the solution of potassium permanganate, the solid permanganate is oxidising and can cause fires if in contact with combustible material. It is harmful if swallowed, and very toxic to aquatic organisms (dilute with large volumes of water for disposal). Dilute sulfuric acid should be labelled ‘irritant’. If time is short, you could provide students with the dilutions of glucose, or they could prepare them in one lesson and monitor the sucrase reaction in a subsequent lesson. The practical could be modified to find the effect of a different concentration of sucrase on the course of the reaction. Pure sucrase must be used. Invertase is an impure form of sucrase contaminated with reducing sugar. Similarly, pure (Analar®) sucrose must be used, rather than granulated sugar. In part B, enzyme activity ceases after it has been added to the assay mixture, where it is denatured by the acid. Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Practical 3.9 Investigating the effect of the concentration of an inhibitor on the activity of catalase Copper sulfate solution is harmful and irritant. Hydrogen peroxide is harmful and irritant, and may bleach clothing or skin and cause burns. Spillages should be washed off immediately using plenty of water. Yeast suspension is low hazard. Make up the solutions as follows, scaling up as necessary: At least 1 hour before the class practical, make a fresh 1% yeast suspension by adding 2 g of dried (baker’s) yeast to 100 cm3 of warm distilled water in a beaker and making up to 200 cm3 with warm distilled water. Sir well. Prepare 3% hydrogen peroxide solution by placing 250 cm3 of stock 6% (20 vol) hydrogen peroxide in a beaker and making up to 500 cm3 with distilled water. The solution should be covered to prevent evaporation. Prepare 3% copper sulfate solution by dissolving 6.0 g of hydrated copper sulfate (CuSO4.5H2O) in 100 cm3 of distilled water in a beaker and making up to 200 cm3 with distilled water. The volumes and concentrations of solutions suggested in the procedure should produce a suitable volume of gas from the control tube, but the teacher or technician should carry out the practical to check that this is the case, and adjust the volumes or concentrations if necessary. If gas syringes are not available, the oxygen can be collected over water in an inverted measuring cylinder. An alternative source of catalase is potato tissue. Take a large potato and peel it. Chop the peeled potato into small pieces and macerate it in a blender with an approximately equal volume of distilled water. Pour the macerate into a beaker and allow it to settle for several hours. A clear solution containing catalase will form above the potato tissue and can be decanted. (Alternatively the extract can be filtered into an Erlenmeyer flask, using a filter pump). Practical 3.10 in solution Comparing the activities of immobilised invertase and invertase The buffer solution, sucrose and invertase solutions are slightly acidic and corrosive. Invertase powder is harmful by inhalation and skin contact. Plastic gloves and a dust mask should be worn when handling the powdered enzyme. Including the controls, there are six reaction mixtures to be tested in this practical: 1 sucrose solution + immobilised invertase 2 sucrose solution + invertase in solution 3 sucrose solution (control) 4 buffer + invertase in solution (control) 5 buffer + immobilised invertase (control) 6 sucrose solution + effluent from immobilised enzyme. This is too much for all students to complete in a limited time, so the work will need to be divided up between groups. All should do 1 and 2, and the controls and effluent (3–6) should be shared out between them. It is important to use a water bath. The optimum temperature of invertase is about 55 °C. the reactions should proceed at a suitable rate at 35 °C, but will be too slow at room temperature. Cambridge International AS and A Level Biology © Cambridge University Press 2014 4 Enzyme samples from different sources can vary, so it is suggested to try out a sample of invertase before the full practical, in case a higher or lower concentration than that suggested in these instructions is required. Commercially available bottles of buffer tablets are available, for various pHs, which are simply dissolved in water to form the desired buffer solution. These ready-made buffer solutions may be preferred to making up buffer using sodium ethanoate and ethanoic acid. Make up the solutions as follows, scaling up as necessary: • Prepare 1 dm3 of 3% sodium alginate suspension by stirring 30 g of sodium alginate into 1 dm3 of distilled water. Wear a disposable dust mask and gloves when weighing out the alginate. Prepare the solution immediately before use. • Prepare 3 dm3 of sodium ethanoate buffer (pH 4.7) by mixing 1300 cm3 of 0.2 mol dm–3 ethanoic (acetic) acid with 1700 cm3 of 0.2 mol dm–3 sodium ethanoate (acetate). • Prepare 1% invertase solution by dissolving 5.0 g of powdered invertase in 400 cm3 of the above buffer. Make up to 1 dm3 with buffer. • Weighed portions (0.125 g) of solid (powdered) invertase should be supplied in weighing boats in a draught-free area such as a fume cupboard. • Prepare 15% sucrose solution in buffer immediately before the practical (the sucrose slowly hydrolyses at the pH of the buffer). Dissolve 150 g in 800 cm3 of buffer and make up to 1 dm3 with buffer. • Prepare 3% calcium chloride solution by dissolving 30 g of calcium chloride in 800 cm3 of distilled water and making up to 1 dm3 with distilled water. All solutions must be made up using distilled water. Calcium ions in tap water will cause the sodium alginate to set. Cambridge International AS and A Level Biology © Cambridge University Press 2014 5 Practical 3.1 Following the course of an enzyme-catalysed reaction using amylase Safety Wear eye protection. 1% amylase solution is an irritant and some people may be allergic to the enzyme. If it contacts the skin, wash off immediately with plenty of water. Apparatus and materials • • • • • • • • • • colorimeter and cuvettes water bath set at 25 °C 250 cm3 beaker 25 cm3 beaker two plastic beakers 100 cm3 measuring cylinder 20 cm3 measuring cylinder 1 cm3 syringe two 5 cm3 syringes 10 cm3 syringe • • • • • • • • • boiling tube test-tube rack stopwatch distilled water 15 cm3 of 2% iodine in potassium iodide solution 60 cm3 of stock starch suspension (10.0 g dm–3) at 25 °C 10 cm3 of stock amylase solution (10.0 g dm–3) at 25 °C eye protection stirring rod Introduction In this practical, you will: • construct a standard curve of absorbance against concentration of starch • measure the course of the hydrolysis of starch by the enzyme amylase. Iodine gives a blue–black colour with starch. The intensity of the colour is proportional to the concentration of the starch. This intensity can be measured in a colorimeter, and used to follow the course of the reaction. As the amylase hydrolyses the starch, the blue colour that starch forms with the iodine decreases in intensity. Procedure A Constructing a standard curve 1 Using the measuring cylinders, dilute some standard iodine solution 1 : 20 with distilled water, in the large beaker. Make up 200 cm3 of this diluted iodine. Stir to mix thoroughly. 2 Set up the colorimeter with a red filter. 3 Place some of the diluted iodine solution in a cuvette, and place the cuvette in the colorimeter. Set the absorbance reading of the colorimeter to zero. This is the blank solution (i.e. one containing no starch). This blank must be kept for comparison throughout the rest of the experiment. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 The stock starch suspension has a concentration of 10.0 g dm–3. Prepare ten dilutions of this stock solution as shown in the table below. Diluting stock starch solution volume of stock starch suspension / cm3 volume of distilled water / cm3 concentration of diluted starch suspension / g dm–3 Stock 1 2 3 4 5 6 7 8 9 10 10.0 7.0 6.0 5.0 4.0 3.0 1.0 0.6 0.4 0.1 0.05 0.0 3.0 4.0 5.0 6.0 7.0 9.0 9.4 9.6 9.9 9.95 10.0 7.0 6.0 5.0 4.0 3.0 1.0 0.6 0.4 0.1 0.05 5 Place 5.0 cm3 of the diluted iodine solution into a 25 cm3 beaker. Use a 1 cm3 syringe to add 0.5 cm3 of the 10.0 g dm–3 starch suspension to the iodine. Stir thoroughly. Pour this mixture into a second cuvette and obtain an absorbance reading in the colorimeter. 6 Repeat step 5 for each of your prepared starch suspensions. Remember to wash out the syringe and beaker after you have tested each mixture. 7 Draw a graph of absorbance against concentration of starch. This is a conversion graph or standard curve. B Following the course of an enzyme-catalysed reaction 1 Using a 5 cm3 syringe, place 5.0 cm3 of the diluted iodine solution into a 25 cm3 beaker. 2 Place 15.0 cm3 of starch suspension and 5.0 cm3 of amylase solution from the stock in the water bath into separate plastic beakers, using the 10 cm3 syringe and a clean 5 cm3 syringe respectively. Mix these together and stir thoroughly. Now add 0.5 cm3 of the mixture to the beaker of iodine solution, using the 1 cm3 syringe. Mix, and start the stopwatch. Pour some of the mixture into a cuvette, and take a colorimeter reading. This must be done quickly. Pour the remaining starch– amylase mixture into a boiling tube and place the mixture in the water bath. 3 Wash the syringes and beaker with distilled water and place another 5.0 cm3 of iodine solution into the beaker. Take another 0.5 cm3 sample from the boiling tube 2 minutes after the enzyme and substrate were first mixed, and repeat the procedure, sampling from the mixture every 2 minutes for 30 minutes (or as long as it takes to get a reasonable change in the colorimeter reading). 4 Record the results in a suitable table. Use the standard curve to convert meter readings into concentrations of starch, and record these values in the table. 5 Plot a graph of starch concentration against time. 6 Describe the shape of the curve, and suggest an explanation to account for its shape. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 3.2 Investigating the effect of temperature on the activity of trypsin Safety Wear eye protection. Take care when using heating apparatus. Apparatus and materials • • • • • • • • • 12 boiling tubes labels or marker pen test-tube rack four 5 cm3 syringes large beaker (water bath) thermometer tripod gauze Bunsen burner • • • • • • • • • heat-proof mat test-tube holder stopwatch stirring rod 50 cm3 of 4% suspension of powdered milk 30 cm3 of 0.5% trypsin solution 10 cm3 of 0.1 mol dm–3 hydrochloric acid 10 cm3 of distilled water eye protection Introduction In this practical, you will: • investigate the activity of trypsin. Powdered milk contains the protein casein. A suspension of this milk in water is opaque and white but it becomes translucent after hydrolysis by the enzyme trypsin. Casein is also hydrolysed by dilute hydrochloric acid, which is a convenient way of preparing an end-point colour standard. Procedure 1 Label four syringes ‘milk’, ‘water’, ‘acid’ and ‘trypsin’. Use these syringes to dispense the correct solutions throughout the investigation, in order to avoid contamination. 2 Label two boiling tubes A and B. Stir the powdered milk suspension thoroughly, and use the syringe labelled ‘milk’ to place 5.0 cm3 of the suspension in each tube. Using the correct syringes, add 5.0 cm3 of distilled water to tube A and 5.0 cm3 of 0.1 mol dm–3 hydrochloric acid to tube B. These tubes will be kept and used to compare the start and end points of the reaction during the subsequent investigation. 3 Place 5.0 cm3 of the milk suspension in another boiling tube labelled C, and 5.0 cm3 of the trypsin solution in a fourth tube labelled D. 4 Prepare a water bath at room temperature. 5 Place tubes C and D in the water bath. Allow 5 minutes for the tubes to equilibrate to the temperature of the water bath. Now add the enzyme to the milk suspension, mix, and return this tube to the water bath. Start the stopwatch. 6 Observe the tube closely and note the time when the tube has reached the colour of the end-point tube B. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 7 Repeat steps 3–6 at four more temperatures between 20 and 70 °C, each time using the water bath and heating apparatus to maintain the temperature of the reaction as constant as possible. 8 Convert your recorded times into rates. Rate is proportional to of 9 1 . Multiplying the values time 1 by 1000 gives rates in more manageable figures (the units are arbitrary). time Present your results in a suitable format. 10 Address the following points and questions. a From your results, what general conclusion can you make about the effects of temperature on enzyme activity? b What further work might you do to confirm your conclusions? c Discuss how changes in temperature affect enzyme activity. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 3.3 Investigating the effect of substrate concentration on the activity of catalase Safety Wear eye protection. The normal safety precautions associated with the use of chemicals apply. Hydrogen peroxide solution can bleach clothing or skin and cause burns. Spillages should be washed off immediately using plenty of water. Apparatus and materials • • • • • • four boiling tubes bung to fit tubes, with delivery tube attached distilled water 65 cm3 of 2.5 mol dm–3 hydrogen peroxide solution cylinders of potato tuber tissue of uniform diameter, about 25 cm long in total two 10 cm3 syringes • • • • • • • 100 cm3 gas syringe retort stand boss and clamp scalpel ruler stopwatch eye protection Introduction In this practical, you will: • investigate the effect of the concentration of the substrate (hydrogen peroxide) on the rate of the reaction, using catalase present in potato tuber tissue. The enzyme catalase breaks down hydrogen peroxide into oxygen and water. Procedure 1 Label four boiling tubes A to D. Using the distilled water and 2.5 mol dm–3 hydrogen peroxide solution, make up four different mixtures as shown in the table below. Four solutions of hydrogen peroxide Tube A B C D 2 Volume of distilled water / cm3 8.0 6.0 4.0 2.0 Volume of hydrogen peroxide / cm3 2.0 4.0 6.0 8.0 Final hydrogen peroxide concentration / mol dm–3 0.5 1.0 1.5 2.0 Attach the bung and delivery tube to boiling tube A and attach the end of the delivery tube to the gas syringe, clamped horizontally. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 3 With a sharp scalpel and a ruler, cut ten slices 1–2 mm thick from the potato tuber tissue cylinder supplied. Immerse all ten slices in the hydrogen peroxide solution in tube A. After 45 seconds replace the bung and record the volume of gas produced in 1 minute. 4 Discard the contents of tube A, rinse the tube and repeat the procedure twice more, recording the volume of gas produced on each occasion. 5 Now repeat steps 3–4 using tubes B, C and D. Record your results in a suitable table and plot as a graph. 6 Address the following points and questions. a Write a balanced equation for the reaction that is taking place in tubes A to D. b What was the effect of increasing the concentration of hydrogen peroxide on the rate of reaction? c What were the chief sources of error in this investigation? d If you were to increase the concentration of hydrogen peroxide further still, how would you expect the rate of reaction to change? e Explain the relationship between substrate concentration and the rate of reaction. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 3.4A Investigating the effect of enzyme concentration on the activity of rennin Safety Wear eye protection. Take care when using heating apparatus. Avoid skin contact with the enzyme solution. Wash off any splashes. Apparatus and materials • • • • • • • • • • 10 test tubes test-tube rack two 1 cm3 syringes 10 cm3 syringe large beaker (water bath) Bunsen burner heat-proof mat tripod gauze about 10 cm3 distilled water • • • • • • • one bung to fit the test tubes stop watch marker pen thermometer piece of black card about 10 cm × 10 cm about 10 cm3 liquid rennet (or the same volume of 1% rennin prepared from the powdered form) 50 cm3 pasteurised milk Introduction In this practical, you will: • investigate how changing the concentration of rennin affects its activity. All young mammals feed on milk. Rennin is an enzyme that is found in the stomachs of young mammals. Its substrate is a protein in milk called casein. The rennin breaks the casein down, causing the milk to clot (Chapter P1, Figure P1.1, page 247 in the Coursebook). For this experiment you will use rennet, which is an extract obtained from the stomach lining of young calves. Rennet contains small amounts of rennin. The activity of the enzyme will be established by measuring how quickly it causes milk to clot. Procedure Before starting, read through the whole procedure, particularly how to determine the end-point in step 11 (you should try observing for an end-point using milk and undiluted enzyme before you begin the experiment). 1 Before you start the practical work, prepare a table like the one on the next page for recording your results. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Record of results for the effect of enzyme concentration on the activity of rennin Tube Concentration of rennet / % 1 2 3 4 5 10 8 6 4 2 A Time at start / s 0 B Time at endpoint / s A–B Time to reach end-point / s Rate of reaction (1000/time in seconds) 2 Place five test tubes in a test-tube rack. 3 Using a 10 cm3 syringe add 9 cm3 of pasteurised milk to each of the tubes. 4 Set up a water bath at 37 °C. Maintain this temperature to within ± 2 °C throughout the experiment. 5 Place the tubes of milk in the water bath. 6 Label five more test tubes 1 to 5 and place them in a test tube rack. 7 Using separate 1 cm3 syringes for the rennet and distilled water, prepare a series of dilutions of the rennet solution provided as shown in the table below. Dilutions of rennet Tube Volume of rennet solution / cm3 Volume of distilled water / cm3 1 1.0 0.0 2 0.8 0.2 3 0.6 0.4 4 0.4 0.6 5 0.2 0.8 8 Remove a tube of milk from the water bath and pour its contents into tube 1. Place a bung in the tube and invert the tube to mix the contents. Place tube 1 back into the water bath at 37 °C. 9 Start the stop watch and leave it running throughout the experiment. 10 Repeat step 8 for tubes 2, 3, 4 and 5. For each tube, using your results table, note the time when the milk is added. These are the start times and must be subtracted from the finish times at the end of the experiment. 11 The milk will gradually ‘set’ (coagulate or clot). About every 30 to 60 seconds, check all five tubes for the end-point.* Rock each tube gently from side to side when checking. Record the time at each end-point in your results table. If no reaction is visible after 15 minutes, record the time taken as infinity (∞) and the rate as zero. *The end-point can be taken as the time taken for a ‘partial set’ (when the developing clot resists movement or when small white granules begin to appear – these can be seen more clearly by holding a piece of black card behind the tube and tilting the tube). It is easier to judge a ‘complete set’. This is when the contents of the tube become solid, but it takes longer. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 12 Calculate the time taken to reach the end-point for each test tube and enter the results in your table. 13 Convert each time taken to a rate of reaction: rate of reaction = 1000 t where t = the time taken in seconds. Enter your results in the table. 14 Decide which is the independent variable and which is the dependent variable in this experiment. Plot a graph to show the effect of rennet concentration on the rate of reaction. 15 Address the following points and questions a State two controlled variables (control variables) in this experiment. b Explain why the concentration of rennet in tube 1 is 10%. c Describe the results shown in the graph. d Explain the effect of changing the concentration of enzyme (rennet) on the rate of reaction. e A sixth tube could be set up containing 1 cm3 water and 9 cm3 milk. What would be the purpose of this tube? f State two limitations of the investigation. g Suggest one improvement to the method that will address each of the limitations that you have given. Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Practical 3.4B Developing a procedure to investigate the effect of enzyme concentration on the activity of rennin Safety Wear eye protection. Take care when using heating apparatus. Avoid skin contact with the enzyme solution. Wash off any splashes. Apparatus and materials • • • • • • • • • • 10 test tubes test-tube rack two 1 cm3 syringes 10 cm3 syringe large beaker (water bath) Bunsen burner water tripod Bunsen burner heat-proof mat one bung to fit test tubes • • • • • • • stop watch marker pen thermometer piece of black card about 10 cm × 10 cm about 10 cm3 liquid rennet (or the same volume of 1% rennin prepared from the powdered form) 50 cm3 pasteurised milk about 10 cm3 distilled water Introduction In this practical, you will: • develop a method to investigate how changing the concentration of rennin affects its activity. All young mammals feed on milk. Rennin is an enzyme that is found in the stomachs of young mammals. Its substrate is a protein in milk called casein. The rennin breaks the casein down, causing the milk to clot (Chapter P1, Figure P1.1 page 247 in the Coursebook). For this experiment, you will use rennet, which is an extract obtained from the stomach lining of young calves. Rennet contains small amounts of rennin. The activity of the enzyme will be established by measuring how quickly it causes milk to clot. You will need to decide the following: • the temperature at which to carry out the experiment • the number of dilutions of the rennet • the intervals between dilutions (in other words, what dilutions will you use?) • the procedure for diluting the rennet • the end-point used • how to present your results. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Procedure Before starting, read through the whole procedure, particularly how to determine the end-point in step 11 (you should try observing for an end-point using milk and undiluted enzyme before you begin the experiment). If you are unsure about any of your decisions, ask your teacher for advice. 1 Decide how many dilutions of the rennet you will use. You will need one tube of milk for each dilution. Place the chosen number of tubes in a test tube rack. Using a 10 cm3 syringe, add 9 cm3 of pasteurised milk to each tube. 2 Set up a water bath at the chosen temperature. Maintain this temperature to within ± 2 °C throughout the experiment. 3 Place the tubes of milk in the water bath. 4 Place one empty test tube in a test tube rack for every tube of milk in the water bath (for example, if there are three tubes of milk, place three empty test tubes in a rack). Label the tubes 1, 2, 3, etc. These will be the tubes in which the rennet will be placed in step 6 below. 5 You will now need to prepare your dilution series for the rennet. Decide what dilutions you will prepare. You will need 1 cm3 of rennet solution in each numbered tube. Make a table to show the volume of rennet and the volume of distilled water needed to prepare 1 cm3 of each dilution. Ask your teacher to check your table before you proceed. 6 Using separate 1 cm3 syringes for the rennet and distilled water, prepare your chosen series of dilutions. Use one numbered test tube for each dilution. 7 Make a table to record your results. You will need to record the tube number, the concentration of rennet and the relevant times from the stop clock (read steps 9 and 10 below). Also add a column for the rate of reaction, which you will calculate after the experiment. 8 Remove a tube of milk from the water bath and pour its contents into tube 1. Place a bung or stopper in the tube and invert the tube to mix the contents. Replace tube 1 in the water bath. 9 Start the stop watch and leave it running throughout the experiment. 10 Repeat step 8 for tubes 2, 3, etc. For each tube, note the time when the milk is added in your table. These are the start times and must be subtracted from the finish times at the end of the experiment. 11 The milk will gradually ‘set’ (coagulate or clot). Small white granules begin to appear – these can be seen more clearly by holding a piece of black card behind the tube and tilting the tube. About every 30 to 60 seconds, check all your tubes for the end-point (decide this for yourself). Rock each tube gently from side to side when checking. Record the time at each end-point in your table. If no reaction is visible after 15 minutes, record the time taken as infinity (∞) and the rate as zero. 12 Calculate the time taken to reach the end-point for each test tube and enter the results in your table. 13 Convert each time taken to a rate of reaction: rate of reaction = 1000 t where t = the time taken in seconds. Enter your results in the table. 14 Decide which is the independent variable and which is the dependent variable in this experiment. Plot a graph to show the effect of rennet concentration on the rate of reaction. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 15 Address the following points and questions. a State the temperature at which you carried out the experiment and explain your choice. b State two controlled variables (control variables) in this experiment. c Describe the results as shown in the graph. d Explain the effect of changing the concentration of enzyme (rennet) on the rate of reaction. e State two limitations of the investigation. f Suggest one improvement to the method that will address each of the limitations that you have given. Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Chapter 4 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Eye protection should be worn at all times. Practical 4.1 Investigating the properties of cell membranes Ethanol and its vapour are highly flammable. Keep them well away from the Bunsen burner and other sources of ignition. Ethanol should be labelled ‘flammable’ and, if methylated spirits are used, ‘harmful’. Dilute hydrochloric acid should be labelled ‘irritant’. Discs of beetroot tissue should be washed thoroughly before the investigation to remove traces of pigment from the outside of the discs. This takes at least 15 minutes – if students stop rinsing the discs too early, the tissue in the control experiment will continue to ‘bleed’. A large cork borer can be used to cut discs of the same diameter. Fresh beetroot must be used (not beetroot preserved in vinegar). The effect of temperature on the integrity of the membrane could be investigated by placing the beetroot into tubes maintained at different temperatures for the same length of time, perhaps 10 minutes. Temperatures between 20 C and 100 C, at 10 C intervals, could be tried. Practical 4.2 Investigating plasmolysis White onion can be used instead of red onion, although the pigment in the red onion cells makes it easier to see plasmolysis taking place. Another alternative is to use the epidermis of rhubarb petioles. If plasmolysis is too rapid in 1 mol dm–3 sucrose solution, try 0.5 mol dm–3 instead. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 4.3 Finding the mean water potential of potato tuber cells Use a sharp knife to cut flat sheets of potato, 10 mm thick. Then cut the sheets into 10 mm strips, removing all skin. Thirty minutes is usually long enough to allow a great enough percentage change in mass of the potato tissue, although it would be better to leave the tissue until no further change in mass occurs. If short lesson times are a problem, the dilutions of sucrose solution could be made up in the previous lesson and stored in the fridge until required. To extend the time the tissue sections are in the solutions, different teaching sets could collaborate over the weighing of the sections. Cutting the chips into smaller slices increases the surface area for osmotic water movement, but introduces further errors in consistency of blotting, as well as differences in the total surface area exposed in each tube. It is better to control these factors by using larger chips. The method takes too much time for students to carry out repeats at each concentration of sucrose. To evaluate reliability, they can pool their results for the % change in mass at each concentration, and calculate mean values. Practical 4.4 Estimating the solute potential of cell sap by the incipient plasmolysis method White onion can be used instead of red onion, although the pigment in the red onion cells makes it easier to see plasmolysis taking place. Another alternative is to use the epidermis of rhubarb petioles. If there is time, for each glucose solution, students can find the % of plasmolysed cells from different areas of the tissue and average their results. Practical 4.5 Investigating the properties of Visking tubing All solutions in the first part are low hazard. The second part of the practical (steps 13–20) is included as extension material, which can be carried out if time is available. This is Chardakoff’s method (the ‘hanging drop’ method). It shows that there has been a change in the concentrations of the solutions inside the Visking tubing bags that were placed in tubes A and C. Methylene blue will stain the skin. If any stain contacts the skin it must be washed off under the tap. Practical 4.6 Rates of diffusion in ‘cells’ of different sizes The teacher or technician will need to experiment with the concentration of potassium permanganate (potassium manganate(VII)) in order to produce a suitably dyed agar jelly that changes colour in a reasonable time. A different concentration of acid can also be tried. Practical 4.7 membranes Investigating the effect of ethanol on the permeability of cell Ethanol is flammable and should be kept away from naked flames. Methylene blue will stain the skin; students must use forceps for handling the plant tissue. If any stain contacts the skin it must be washed off under the tap. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Solutions and reagents can be supplied in beakers or other suitable containers that will allow for the removal of solution using a syringe. To prepare 32% ethanol, take 32 cm3 of ethanol and make up to 100 cm3 with distilled water (scale up volumes to make enough for the class). The dilute ethanol should be supplied in a covered container to prevent evaporation. Suitable plant tissues are potato tuber, sweet potato or cassava. The tissue should be prepared 24 hours before the practical. Use fresh material that has not be stored or refrigerated for a long period of time. Remove the outer skin and cut into lengths with a cross-section of 0.5 cm 0.5 cm. Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Practical 4.1 Investigating the properties of cell membranes Safety Wear eye protection. Take care when using heating apparatus. Dilute hydrochloric acid is an irritant. Spillages should be washed off immediately using plenty of water. Ethanol is highly flammable – keep it well away from the Bunsen flame. Wash hands after handling biological material. Apparatus and materials • • • • • • • • • • 12 boiling tubes labels or marker pen test-tube rack large beaker (water bath) tripod gauze Bunsen burner heat-proof mat test-tube holder colorimeter • • • • • • • thermometer 50 cm3 of distilled water 15 cm3 of ethanol 15 cm3 of dilute hydrochloric acid three 10 cm3 syringes 20 discs of fresh beetroot (Beta vulgaris) about 2 mm thick, of a suitable size to fit the boiling tubes (discs should be rinsed under running water until no further colour is lost – this takes at least 15 minutes) eye protection Introduction In this practical, you will: • investigate the effects of various solutions and different temperatures on plant cell membranes. Beetroot cells contain a red pigment in their cell sap. The pigment is normally retained in the vacuole by the membrane around the vacuole (the tonoplast). Procedure 1 Label six boiling tubes 1 to 6. Place three discs of the beetroot in each tube. 2 Add 10 cm3 of distilled water to tube 1, 10 cm3 of ethanol to tube 2 and 10 cm3 of dilute hydrochloric acid to tube 3. Leave these three tubes in the rack for observation. Add 10 cm3 of distilled water to tubes 4, 5 and 6. Half fill the beaker with tap water and place tubes 4, 5 and 6 in the beaker. Heat the water and remove tube 4 when the temperature reaches 40 °C. Continue to heat the water and remove tube 5 when the temperature reaches 65 °C. Again, continue to heat the water and remove tube 6 when the temperature reaches 100 °C. Pour off the solution from tubes 1–6 into six clean boiling tubes also labelled 1–6. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 5 Examine each tube against a white background and compare their contents. Note the depth of colour and record your observations in a table. 6 Use a colorimeter fitted with a green filter to measure the absorbance of the different solutions from tubes 1–6 against a blank of distilled water. Add the absorbance readings to your table. 7 Explain the depth of colour produced in each of the tubes. 8 Explain how you might modify the second half of the experiment to investigate more fully the effect of temperature on the integrity of the beetroot membranes. Consider how exposure to different temperatures might be better controlled and suggest suitable temperature intervals. If there is time, you could carry out this investigation. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 4.2 Investigating plasmolysis Safety Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Take care when using heating apparatus. Wash hands after handling biological material. Apparatus and materials • • • • • • • microscope two microscope slides two cover slips dropping pipettes scalpel forceps filter paper • • • • • • watch glass red onion (Allium sp.) knife chopping board or tile 20 cm3 of distilled water 20 cm3 of sucrose solution (1 mol dm–3) Introduction In this practical, you will: • make a temporary preparation of epidermal cells from a red onion • observe plasmolysis and deplasmolysis in these epidermal cells. In plant cells, plasmolysis takes place when the cell surface membrane pulls away from the cell wall, leaving a space between the membrane and the wall. Plasmolysis is caused by water passing out of the cell. This may be due to osmosis, or it may happen if the cell loses water by evaporation. Cells can recover from a plasmolysed state if they take up enough water. This recovery is called deplasmolysis. You can observe plasmolysis and deplasmolysis in cells taken from the bulb of a red onion. Procedure 1 Remove some small squares of epidermal tissue from the inner concave surface of one of the outer storage ‘leaves’ of a red onion bulb (see the diagram below). The squares must be small enough to fit under a cover slip. It is easiest to make some square cuts in the inner surface of the leaf before you remove the epidermis. Place the pieces of tissue in some distilled water in a watch glass. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 2 Mount a piece of the epidermal tissue in water on a microscope slide. Keep the tissue flat, with no air bubbles under the cover slip. 3 Observe these normal cells through the medium-power and high-power objectives of the microscope. 4 Mount another piece of onion epidermis in 1 mol dm–3 sucrose solution on a clean microscope slide. Again observe the onion cells under the medium-power and high-power objectives. Can you see plasmolysis taking place? If you watch carefully over several minutes, you should be able to see the cell surface membrane pull away from the inside of the cell wall. 5 Draw and label a few plasmolysed cells (Figure 4.14 on page 85 of the Coursebook). 6 Irrigate the slide with distilled water. Place a drop of water on the slide so that it touches the edge of the cover slip. Use a piece of filter paper to draw the water across the slide under the cover slip, by touching the edge of the cover slip on the side opposite the water (see the diagram below). 7 Observe the cells for any signs of deplasmolysis. If you do not see any change, remove the cover slip and soak the tissue in distilled water in the watch glass for a few minutes. Replace the cover slip and try again. 8 Address the following points and questions, using the term water potential where you can. a Have the cells plasmolysed in the sucrose solution? Have all the cells plasmolysed? If not, can you explain why? b Why do the cells deplasmolyse in distilled water? c What fills the space between the cell wall and the cell surface membrane in a plasmolysed cell? Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 4.3 Finding the mean water potential of potato tuber cells Safety Take care when using sharps. Wash hands after handling biological material. Apparatus and materials • • • • • • six boiling tubes labels or marker pen test-tube rack sharp knife chopping board potato tuber tissue (Solanum tuberosum) • • • • • paper towels two 20 cm3 syringes balance weighing to 0.01 g 100 cm3 of 1 mol dm–3 sucrose solution 100 cm3 of distilled water Introduction In this practical, you will: • establish the mean water potential of potato tuber cells. If pieces of potato tuber tissue are placed in different concentrations of sucrose solution, the tissue gains or loses mass depending on the water potential of the solution. If there is no change in the mass of the tissue, then the sucrose solution has a water potential which is the same as that of the tissue itself. Procedure 1 Label six boiling tubes 1 to 6. Using distilled water and 1 mol dm–3 sucrose solution, make up six different dilutions of sucrose solution as shown in the table below. Shake each mixture thoroughly. Dilutions of sucrose in tubes 1–6 Tube 2 Volume of distilled water / cm3 Volume of 1 mol dm–3 sucrose solution / cm3 Molarity / mol dm–3 1 20 0 0.0 2 16 4 0.2 3 12 8 0.4 4 8 12 0.6 5 4 16 0.8 6 0 20 1.0 Using a sharp knife, cut six potato tuber sections at least 10 mm in width and 50 mm long. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 3 Blot each section gently to remove any surface moisture. Weigh the first section and place it in tube 1, making a note of the mass. Repeat for tubes 2 to 6. 4 Leave the potato tuber sections in the sucrose solutions for at least 30 minutes. 5 Remove the tuber sections one at a time; gently blot the surface of the potato and re-weigh. Make sure that you don’t mix up the sections. 6 Calculate the percentage change in mass of each section, using the formula: percentage change in mass = change in mass ´ 100% starting mass 7 Plot a graph of the percentage change in mass against the molarity of the sucrose solution. (The x-axis should intercept with the y-axis at 0% change in mass.) 8 Find the point where the line of your graph crosses the x-axis (i.e. where there is no change in mass). This is the molarity of a solution that has a water potential equal to the water potential of the potato tuber cells. 9 Use the table below to work out the water potential of a solution having this molarity. To do this, it is best to plot a second graph, of water potential against molarity. Water potential for a range of sucrose solutions Molarity of sucrose solution / mol dm–3 Water potential / kPa 0.0 0 0.2 –540 0.4 –1120 0.6 –1800 0.8 –2580 1.0 –3500 10 Explain your results using the term water potential. 11 Describe the limitations of using a change in mass as a measure of osmosis. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 5 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Eye protection should be worn at all times. Practical 5.1 Investigating mitosis in root tips A stock solution of acetic orcein contains 2.2 g of orcein dissolved in 100 cm3 of glacial ethanoic (acetic) acid, and is corrosive. Dilute 10 cm3 of this solution with 12 cm3 of water before use. Wear eye protection and gloves. Carry out the preparation and dilution in a fume cupboard. The diluted solution should be discarded after the practical. Students should wear gloves when handling acetic orcein stain. Dilute (1 mol dm–3) hydrochloric acid should be labelled ‘irritant’. Root tips of other species such as onion or garlic (Allium sp.) can be used. However, broad bean (Vicia faba) has a smaller number of larger chromosomes, which are easier to see through the microscope. Soak the beans for 24 hours and then plant them in moist potting compost. This is better than using jars with blotting paper, where the root tips tend to dry out. The beans take about 10 days (depending on the temperature) to grow suitable roots. Keep them well watered. Two or three beans will usually provide enough root tips for a class. Activity 5.1 Investigating a karyotype There are no specific safety issues. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 5.1 Investigating mitosis in root tips Safety Wear eye protection. Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Take care when using heating apparatus. Do not inhale the acetic orcein fumes. Wear gloves when handling the stain. Dilute (1 mol dm–3) hydrochloric acid is an irritant. Spillages should be washed off immediately using plenty of water. Apparatus and materials • • • • • • • • • • • scissors scalpel forceps mounted needle dropping pipettes filter paper microscope slides cover slips Bunsen burner prepared slide of root tip showing mitosis • • • • • • • • • • acetic orcein stain boiling tube test-tube rack aluminium foil thermostatically controlled water bath set at 70 °C 10 cm3 of 1 mol dm–3 hydrochloric acid calibrated eyepiece graticule broad bean (Vicia faba) plants with roots about 5–10 cm in length eye protection protective gloves Introduction In this practical, you will: • make a temporary preparation of root tips of broad bean (Vicia faba). Part of a plant root tip contains meristematic tissue, where stages of mitosis can be seen. You should make a few slide preparations so that you can use the best one for making observations and drawings. Before you look at your own preparations through the microscope, you should look at a prepared slide of a root tip and identify cells that are undergoing mitosis. A good time to do this is while the roots are staining in the acetic orcein (step 5). Acetic orcein stains the chromosomes red. Procedure 1 Place about 10 cm3 of acetic orcein stain in a boiling tube. Add three drops of 1 mol dm–3 hydrochloric acid. Cover the tube with a cap of aluminium foil. Acetic orcein has a strong vinegarlike smell which can be an irritant. The foil reduces the escape of fumes from the tube. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 2 Remove a bean plant from the compost in which it has been growing, taking care not to damage the root tips. Gently wash the roots under the tap, collecting the compost in a sieve to avoid blocking the sink. 3 Using scissors cut a few undamaged roots about 5 cm long from the plant. Make sure you note which end is the growing tip of the root. 4 Remove the foil cap from the boiling tube and place the roots, tips down, in the acetic orcein. It doesn’t matter if the whole root is not fully submerged in the stain as long as the tip is. Replace the foil cap. 5 Place the boiling tube in a water bath set at 70 °C. After 30–40 minutes, remove the tube and stand it in a test-tube rack. (Use the heating time to look at prepared slides of root tips.) 6 Wear protective gloves from now on, to avoid getting the stain on your hands. Use forceps to transfer a stained root tip to a microscope slide. Use a scalpel to cut off and discard all but the terminal 3–4 mm of the tip. 7 Add two drops of the acetic orcein from the boiling tube. Gently lower a cover slip onto the specimen, using a mounted needle. Place a filter paper on top of the cover slip and firmly press down to squash the tissue. The aim is to spread out the cells to a single layer, but without altering their relative positions along the root tip. You can use the handle of a mounted needle to complete the squashing. The tissue should spread out to cover an area about 5 mm × 5 mm – don’t be afraid to squash the preparation well, or you won’t be able to see individual cells. Prepare two or three root-tip samples in this way. 8 Observe each of your slides using the low-power objective lens. Cells undergoing division are small and square in shape, with the nucleus taking up most of the cell during interphase (see Figure 5.9 in the Coursebook). Find an area containing cells in different stages of mitosis. Select the slide which shows the cells most clearly. 9 Look at the dividing cells using the high-power objective and identify cells in interphase, prophase, metaphase, anaphase and telophase. Make labelled drawings of each of these stages. Use a calibrated eyepiece graticule to measure a cell and add a scale to your drawing. 10 Estimate the percentage of cells in the meristematic area that are undergoing mitosis. This is equivalent to the proportion of the cell cycle taken up by mitosis. (Note that interphase is not part of mitosis.) Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 6 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Enzymes in powdered form (i.e. if the teacher or technician makes up the solution) are harmful. They are irritating to the eyes, there is a risk of serious damage to the eyes, and they may cause sensitisation by inhalation. Enzyme solutions equal to or stronger than 1% (w/v) are irritants. Enzyme solutions less than 1% (w/v) are low hazards. The risk assessment should consider the problem of allergic responses to enzymes. Eye protection should be worn at all times. Practical 6.1 Extracting DNA from onion bulb cells Ethanol and its vapour are highly flammable. Keep them well away from the Bunsen burner and other sources of ignition. Ethanol should be labelled ‘flammable’. Novo neutrase™ solution can be used instead of pepsin. It is available from the National Centre for Biotechnology Education. The threads of DNA can also be stained with acetic orcein. Other plant materials such as kiwi fruit (Actinidia sp.) or banana can be used instead of onion bulb tissue. Activity 6.1 DNA and RNA There are no specific safety issues. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 6.1 Extracting DNA from onion bulb cells Safety Wear eye protection. Take care when using sharps. Take care when using heating apparatus. Ethanol is highly flammable – keep it well away from the Bunsen flame. Enzyme solutions equal to or stronger than 1% (w/v) are irritants. Wash hands after handling biological material. Apparatus and materials • • • • • • • • • • glass rod blender water bath set at 60 °C two 400 cm3 beakers boiling tube test-tube rack funnel and coarse filter paper (or coffee filter paper) Pasteur pipette knife or scalpel microscope slide • • • • • • • • chopping board onion bulb (Allium sp.) universal indicator 600 cm3 beaker containing small amount of ice (as an ice-water bath) 3 g of sodium chloride and 10 cm3 of washing-up liquid dissolved in 100 cm3 of distilled water 10 cm3 of 95% ethanol stored in a freezer for at least 12 hours before use 2 cm3 of 1% pepsin eye protection Introduction In this practical, you will: • extract some DNA from onion cells. Procedure 1 Cut an onion bulb into small pieces and transfer them to a beaker. Add approximately 100 cm3 of the salt and detergent mixture, and stir thoroughly. 2 Place the beaker in a water bath at 60 °C for 15 minutes. The detergent forms complexes around the membrane phospholipids and proteins, causing them to precipitate out of solution. The sodium ions from the salt shield the negatively charged phosphate groups of the DNA molecules, causing them to coalesce. At 60 °C, nuclease enzymes, which would otherwise start to fragment the DNA, are partially denatured. 3 Cool the mixture in an ice-water bath for 5 minutes, stirring frequently. This slows down the denaturation of DNA that would occur if a high temperature were maintained. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 Pour the mixture into a blender and blend for 5 seconds. This permits the release of DNA by further degrading the cell walls and membranes. However, the DNA will be broken up if blending is carried out for more than 5 seconds. 5 Filter the mixture into a beaker, ensuring that the foam on the surface of the mixture does not contaminate the filtrate. Note that filtration may take some time to complete. 6 Transfer 6 cm3 of the filtrate to a clean boiling tube. 7 Add four drops of the 1% pepsin solution provided. Mix thoroughly. Pepsin hydrolyses the proteins in the mixture to amino acids. 8 Slowly pour 9 cm3 of ice-cold 95% ethanol down the side of the tube so that it forms a layer over the filtrate and enzyme mixture. Leave the tube for a few minutes without disturbing it. 9 Using a Pasteur pipette, try to draw up some threads of the fibrous material that forms in the cold ethanol and transfer the material to a slide. These threads contain DNA from the onion cells. Add a drop of universal indicator to confirm they are acidic. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 7 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Eye protection should be worn at all times. Practical 7.1 Investigating stem, root and leaf structure Phloroglucinol (benzene-1,3,5-triol) is an irritant. The fresh pieces of stem should be from a plant with a translucent stem. Sections are very easy to cut from a Busy Lizzie (Impatiens sp.). Celery is not suitable for this exercise, as celery stalks are petioles rather than stems. Practical 7.2 Investigating xylem and phloem Solid eosin is an irritant, take care not to inhale the powder or get it on skin when making up the solution. Celery (Apiaceae graveolens) tissue can be torn lengthways to reveal vascular bundles. These can be teased out and cut into lengths to be given to students. The tissue can be teased apart with mounted needles and provided to students in watch glasses so that they can see individual cells. Practical 7.3 potometer Investigating the rate of transpiration of a leafy shoot using a It is important to use a twig with a stem that is a good fit in the rubber tubing. When the apparatus and twig are held in the clamp, water will be seen to drip out of the end of the capillary tubing if there are any air leaks. Twigs can take some time to equilibrate. A hair drier or fan can be used to find the effect of moving air on the rate of transpiration. A suitable control would be the same shoot placed in still air, or in a clear plastic bag, and allowed to equilibrate. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Other factors (including temperature, light intensity, humidity, and wind speed) must be maintained the same in each treatment. It is possible to compare rates of transpiration in two twigs of the same species, or two different species such as a mesophyte and a plant showing xerophytic adaptations. In this case, the rate must be measured as volume of water taken up per unit leaf area. A xerophyte would be expected to have a lower rate of transpiration per unit leaf area, assuming that all other conditions are the same. Practical 7.4 Preparing a slide of epidermal cells from a lettuce leaf It is recommended that a ready-made solution of 2% iodine in potassium iodide is purchased. The ready-made solution is low hazard. Practical 7.5 Investigating stomatal density This exercise can be carried out with other species of plant, such as Pelargonium, although privet is easier, and best tried first. Other comparisons can be made, such as stomatal densities of plants of the same species from sunny and shady habitats. The nail varnish takes at least 20 minutes to dry fully. Test the nail varnish on leaves before the lesson: some cheaper brands do not work well. Practical 7.6 Investigating the leaves of xerophytes A simple model of a marram grass leaf can be made with a piece of paper rolled lengthwise. This helps students to relate the transverse section to the whole leaf. Teachers may be able to find suitable local examples of xerophytes for the students to study. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 7.1 Investigating stem, root and leaf structure Safety Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Phloroglucinol (benzene-1,3,5-triol) is an irritant. Spillages should be washed off immediately using plenty of water. Wash hands after handling biological material. Apparatus and materials • • • • two pieces of a non-woody stem (e.g. Impatiens sp.); one of the pieces should have been standing in water for 24–48 hours, the other should have been standing in water with a little eosin added to it for the same time prepared slide of TS of a young stem (e.g. sunflower (Helianthus sp.) or buttercup (Ranunculus sp.)) prepared slide of TS of a young root (e.g. buttercup) prepared slide of TS of a leaf from a mesophyte (e.g. privet (Ligustrum sp.)) • • • • • • • • • • • privet leaf teat pipette carrot taproot (Daucus sp.) hand lens 10 cm3 of acidified phloroglucinol slides forceps tile single-edged razor blade or sharp scalpel microscope calibrated eyepiece graticule Introduction In this practical, you will: • examine the distribution of vascular tissue in roots, stems and leaves • observe the two plant transport tissues, xylem and phloem. Procedure 1 You are provided with a stem that has been standing in water coloured with a dye. Use a singleedged razor blade or a sharp scalpel to cut a thin cross-section. Put the cross-section on a microscope slide and study it through a hand lens. If it is thin enough, you may be able to observe it using the low-power objective of your microscope. 2 Draw a low-power plan to show the distribution of the coloured dye in the stem section. Annotate your drawing to explain which tissues (xylem, phloem or others) contain the dye. 3 You are also provided with a piece of stem that has been standing in water, not a coloured dye. Cut a similar section of this stem and place it on a microscope slide. Add some acidified phloroglucinol to stain lignified cell walls. What colour do you see? Compare the two sections and explain your observation. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 Use the low-power objective of your microscope to examine the prepared slide of a transverse section (TS) of a stem. Draw a low-power plan to show the distribution of the tissues. Label your drawing, using Figure 7.4 on page 129 of the Coursebook to help you. Use a ruler or calibrated eyepiece graticule to measure the width of the stem section. Calculate the magnification of your drawing and add this to the drawing. 5 Repeat steps 3 and 4 using a piece of carrot root and a prepared slide of a cross-section of a root. 6 Use a razor blade to cut across a leaf to give a cross-section. Use a hand lens to look at the surfaces of the leaf and the section that you have cut. Notice the shape of the leaf in cross-section and the position of the upper and lower surfaces. 7 Use a hand lens to look at the prepared slide of a TS of a privet leaf. Compare what you see with the cut section of your leaf. Put the slide on the microscope and use low power and medium power to focus on the leaf section. Make sure you are viewing it the right way round – with the upper surface at the top of the field of view. 8 Repeat step 4 using the prepared slide of privet leaf. Use Figure 7.7 on page 130 of the Coursebook to help you. 9 Construct a diagram to show the pathway taken by water as it travels through a plant from the soil surrounding the root hairs to the atmosphere surrounding a leaf. In your diagram, show the position of the xylem tissue in root, stem and leaf. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 7.2 Investigating xylem and phloem Safety Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • • a length of fresh celery (Apiaceae graveolens.) petiole that has been left standing in water with a little added eosin for 24–48 hours vascular bundles teased out from celery petiole tissue prepared slide of TS of a young stem, (e.g. cucumber (Cucurbita sp.) or sunflower (Helianthus sp.)) prepared slide of LS of a stem (e.g. cucumber or sunflower) • • • • • • • • • hand lens slides cover slips tile single-edged razor blade or sharp scalpel forceps mounted needles microscope calibrated eyepiece graticule Introduction In this practical, you will: • study the microscopic structure of xylem and phloem tissues within the vascular bundle. Procedure 1 You are provided with a petiole of celery that has been standing in water containing a coloured dye. Use a single-edged razor blade or a sharp scalpel to cut a thin cross-section of the petiole. Place the cross-section on a microscope slide and study it through a hand lens. If it is thin enough, you may be able to observe it under the low power of your microscope. 2 Draw the cross-section of the celery petiole to show the distribution of the areas that are stained by the dye. Label these areas. 3 Cut the celery petiole so you have a piece about 1 cm in length. Make another cut lengthways through the middle of one of the vascular bundles. Now cut a thin longitudinal section from this area and transfer your section onto a microscope slide. Observe the section using the low-power objective to see if any xylem vessels are visible. If you have cut a thin enough section, you can mount it in water, add a cover slip and observe using the medium-power objective. Use Figure 7.6 on page 130 of the Coursebook to help you identify xylem tissue. If you are not successful, repeat this step until you cut a section that is thin enough. 4 Write an illustrated description of what you can see under the microscope. 5 You are provided with some vascular tissue that has been dissected from a celery petiole. Use mounted needles to tease the white xylem tissue from the green phloem. Cut lengths of xylem and Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 phloem and mount them in water on separate microscope slides. Add cover slips. Observe using the low-power and high-power objectives of your microscope. Add any further information you have discovered to your description in step 4. 6 Use the low-power objective of your microscope to examine the prepared slide of a transverse section (TS) of a stem. Find the xylem. Use the high-power objective to examine carefully the xylem tissue. Compare what you can see with Figure 7.7 on page 130 of the Coursebook. 7 Using the high-power objective of your microscope to observe, draw three adjacent xylem vessels. Use a calibrated eyepiece graticule to measure the width of one of the xylem vessels and indicate this on your drawing. No labels are required. 8 Examine a prepared longitudinal section (LS) of stem under high power for xylem vessels. Add any further observations to the illustrated description you made in step 4. 9 Look again at the prepared slide of a transverse section of a stem. This time, find phloem tissue. Use the high-power objective to examine the phloem tissue carefully. Look for any sieve plates with sieve pores – sometimes these are visible in cross-sections. 10 Make a drawing to show the details of three adjacent phloem sieve tube elements and their companion cells. Use a calibrated eyepiece graticule to measure the width of one of the sieve tube elements and indicate this on your drawing. Use labels to identify the two types of cell you have drawn. 11 Examine a longitudinal section of stem using the high-power objective and look for phloem tissue. Compare what you can see with Figure 7.23 on page 142 of the Coursebook. 12 Write an illustrated description of your observations of phloem tissue. 13 Construct a table to show the differences between xylem and phloem tissue that are visible using a light microscope. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 7.3 Investigating the rate of transpiration of a leafy shoot using a potometer Safety Take care when using sharps. Take care when using mains-operated lamps in close proximity to water. Wash hands after handling biological material. Apparatus and materials • • • • length of capillary tubing (about 30 cm) with a short connecting piece of rubber tubing attached 5 cm3 syringe leafy twig with leaves that can be removed in pairs (e.g. laurel (Laurus sp.)) in water scissors • • • • • paper tissues retort stand and clamp lamp stopwatch petroleum jelly Introduction In this practical, you will: • investigate the effect of leaf area on the rate of transpiration, using a simple photometer • plan an experiment to find out how an environmental factor affects the rate of transpiration. Procedure 1 Attach a syringe to the end of the capillary tubing and draw water carefully through the tubing. Submerge the syringe and the capillary tubing in water and detach the syringe, ensuring that there are no air bubbles left in the capillary tubing. 2 Submerge the cut end of the leafy twig and attach it to the capillary tubing under water, making sure that the attachment is watertight and being careful to exclude air bubbles. 3 Remove the twig and the attached capillary tubing (see diagram opposite) and wipe excess water from the surface of both using paper tissues. Clamp the capillary tubing vertically and place a lamp about 15 cm from the twig. 4 Measure and record the distance moved by the water meniscus in the capillary tubing over a five-minute interval. If necessary, repeat until the rate of uptake has stabilised. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 5 Convert the distance l moved by the water in 1 minute into a rate of uptake, using the formula πr2l, where r is the internal radius of the capillary tubing (in mm). For example, if the internal radius is 0.75 mm, and the water moved 115 mm in 1 minute: rate of uptake = π 0.75 0.75 115 = 3.14 0.75 0.75 115 = 203 mm3 min–1 6 Remove the apical (top) pair of leaves. Place a little petroleum jelly on the stem where each leaf has been removed, and measure and record the rate of water uptake. 7 Continue removing successive pairs of leaves from the twig, each time measuring and recording the rate of water uptake after removal of each pair. Remember to use petroleum jelly each time to seal the stem where the leaves have been removed before recording. 8 Place the leaves on graph paper and trace round the margin of each leaf, numbering the tracings according to the order in which they were removed. Calculate the surface area of each leaf in cm2 and record your results in a suitable form. 9 Plot a graph of the rate of transpiration (mm3 min–1) against the total leaf area (cm2). 10 Describe and explain the effect of the successive removal of leaves from the twig on the rate of uptake of water. 11 Use the potometer to plan an investigation to find out the effect of a named environmental factor on the rate of transpiration of a leafy shoot. (Hint: Is a hair drier or fan available?) If there is time, you could carry out your investigation; remember that your investigation must be controlled, and you must only change one factor at a time. 12 What are the limitations of using a potometer to measure the rate of transpiration? (Hint: What is the definition of transpiration? Does a potometer measure this?) Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 7.4 Preparing a slide of epidermal cells from a lettuce leaf Safety Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • • • • microscope calibrated eyepiece graticule scalpel lettuce leaf (Lactuca sp.) slides and cover slips forceps • • • • • mounted needle dropping pipette distilled water filter paper eye protection Introduction In this practical, you will: • make a temporary preparation of epidermal cells from a lettuce leaf • set up a light microscope and use it to make observations and measurements • make a drawing of the epidermal cell • use an eyepiece graticule to measure the size of the cells. Procedure 1 Identify the upper surface of a lettuce leaf. It is darker than the lower surface. With the lower surface facing towards you, gently tear the leaf, as you would tear a piece of paper. You should be able to see the thin, transparent upper epidermis along the edge of the tear. This takes practice. 2 Select an area where the upper epidermis is visible and place a small piece of the leaf containing this area onto a clean microscope slide, with the outer surface of the leaf facing upwards. Trim away any thick (green) parts of the leaf using a sharp scalpel. To avoid folding the epidermis, gently ‘roll’ the scalpel blade on the specimen and remove the unwanted tissue using forceps. You should be left with a piece of the transparent epidermis a few millimetres wide on the slide. 3 Add two drops of distilled water to the slide. Place a cover slip over the water and lower it gently onto the specimen using a mounted needle. Use a piece of filter paper to absorb excess water. 4 Observe the epidermis under the microscope, first using first low-power and then medium-power objectives. The cell walls of the epidermal cells are visible as wavy lines looking rather like a jigsaw puzzle. Between the epidermal cells, pairs of guard cells and stomata should be visible. 5 Use the high-power objective to select a few epidermal cells and a guard cell pair. Make a large, labelled drawing of these cells. 6 Use the eyepiece graticule that you calibrated in Practical 1.1 to measure the length of one of the guard cells that you have drawn. Now measure the length of this cell in your drawing. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 7 Calculate the magnification of your drawing, using the formula: magnification = length of drawing of cell actual length of cell Remember that both lengths must be measured in the same units, e.g. micrometres (m). Write the magnification underneath your drawing. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 7.5 Investigating stomatal density Safety Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • shoot from plant with simple, non-hairy leaves, such as privet (Ligustrum) bottle of colourless nail varnish fine forceps • • • • paintbrush slides microscope calibrated eyepiece graticule Introduction In this practical, you will: • compare the density of stomata on the lower and upper surfaces of a leaf. Procedure 1 Spread a thin layer of nail varnish to cover about 1 cm2 over the lower epidermis of a leaf. Spread another layer over the upper surface of a different leaf. 2 Allow the varnish to dry (this takes at least 20 minutes). 3 Peel off the layer of varnish from the lower surface of the first leaf, using fine forceps. Lay the varnish on a slide and gently flatten it on the slide using a paintbrush. Do not use a coverslip. 4 Examine the varnish under the microscope and locate the imprints of the stomata. Try both medium-power and high-power objectives and choose the most suitable magnification for counting the number of stomata in the field of view. 5 Count the stomata in the field of view. Repeat twice more at different locations on the leaf surface and calculate the average number of stomata visible in the field of view. 6 Repeat steps 3–5 for the varnish from the upper surface of the second leaf. 7 Measure the diameter of the field of view, using a calibrated eyepiece graticule. 8 Determine the area of the field of view using the formula πr2 and record the mean number of stomata per mm2 for both lower and upper leaf surfaces. 9 Which surface has a greater stomatal density? Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 7.6 Investigating the leaves of xerophytes Safety There are no special safety precautions. Apparatus and materials • microscope hand lens • • calibrated eyepiece graticule prepared slide of TS of a leaf of marram grass (Ammophila arenaria) Introduction In this practical, you will: • observe some of the adaptations shown by the leaves of a xerophyte, marram grass. Xerophytes are plants that have adaptations for survival in dry conditions. Procedure 1 Use a hand lens to look at the prepared slide showing a transverse section of a leaf of marram grass (Ammophila arenaria). Compare this section with Figure 7.22 on page 141 of the Coursebook. Also observe fresh leaves of marram grass, if these are available. 2 Study the diagram below, which is a plan drawing of a transverse section of a leaf of marram grass. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Use the low-power and high-power objectives of your microscope to find the areas that correspond with the structures listed below: • outer epidermis • inner epidermis • epidermal hair • vein • thin-walled mesophyll cells containing chloroplasts • thick cuticle • area of thick-walled cells providing support. Indicate the position of each on the plan drawing using label lines. 3 Read the following information about marram grass. Marram grass, Ammophila arenaria, grows on sand dunes around the coasts of western Europe. It is the dominant species on young dunes where sand is deposited by the wind. Small heaps of sand build up around marram plants and fresh shoots grow up through the sand that collects over them. In fact, marram does not grow well where sand is not frequently deposited by the wind. Sand drains very well and retains very little water. This means that only plants well adapted to dry conditions can survive on sand dunes that are often exposed to strong winds. Rates of transpiration are very high. Marram grass is well adapted to such dry, windy conditions. Marram grass is a xerophyte. It grows in a dry habitat and can decrease its transpiration to a minimum under conditions of water shortage. In common with other grasses, marram grass has long, narrow leaves. In wet weather, the leaf is flat and looks like many other grass leaves. In dry weather, cells located at the base of each furrow lose water and shrink. These cells are called hinge cells because, when they shrink, the furrows become narrower, making the leaf roll up to form a tube. When fully rolled-up, there is just a narrow slit along one side of the tube to allow the entry of air. 4 Study Figure 7.21a on page 140 of the Coursebook, which shows a scanning electron microscope (SEM) micrograph of a transverse section through part of a rolled leaf of marram grass. The inside of the leaf has deep furrows that are lined by thin mesophyll cells full of chloroplasts. Much of the rest of the leaf is made of large, thick-walled cells, which support the leaf, and veins that carry water, nutrients and sugars. When rolled like this, the leaf has a small ratio of external surface to its volume. The outer (lower) epidermis has a thick cuticle and no stomata. All the stomata are on the inner (upper) epidermis where additional protection is provided by stiff interlocking hairs that reduce the flow of air inside the leaf. 5 Using your observations and the information above, answer the following questions. a Draw up a table to show the differences between the upper and lower epidermis of marram grass. b Explain how and why the epidermal cells from opposite sides of the leaf of marram grass are different. c State three ways in which leaves of marram grass are adapted to survive in dry weather. Explain how each of the methods you describe is effective in helping the plant to survive. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 8 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 8.1 Microscopy of blood vessels Most commercially prepared slides of artery and vein tissue show a muscular artery and a vein, as in Figure 8.6 on page 161 of the Coursebook. It is possible to obtain slides of elastic arteries to compare with the muscular arteries. Slides of the aorta are suitable. Practical 8.2 Observing mammalian blood Small volumes (25 cm3) of defibrinated mammalian blood (e.g. horse blood) can be bought from biological suppliers. It will keep in a refrigerator for up to 4 weeks. Used slides and cover slips should be placed in disinfectant (5% chlorine-based bleach solution, labelled ‘irritant’). Wright’s stain contains eosin and methylene blue dissolved in methanol. It should be labelled ‘highly flammable’ and ‘toxic’. It is safer to purchase the ready-made stain. It is not essential for students to wear gloves when handling sterile blood samples, but they may prefer to do so to avoid getting any blood on their hands. Any blood that does get on hands should be washed off with soap and water. Gloves should be worn when handling stains. Eukitt® mounting medium is available from various suppliers (e.g. BDH). It will allow the smears to be kept for several days, and does not cause the stain to fade. However, it is possible to observe the cells without using a cover slip. Students may ask the meaning of eosinophil and basophil. Eosinophils stain with acidic dyes such as eosin. Basophils stain with basic dyes. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 8.3 Heart dissection At the end of the practical, the hearts and any material cut from them should be wrapped up and disposed of safely. Normally, sheep (or goat or ox) hearts obtained from butchers do not have intact atria or major blood vessels attached. Obtain hearts direct from an abattoir, or ask a butcher to order some for you with vessels attached. Alternatively, ask for hearts with lungs attached. Students may want to put their textbooks into clear plastic bags to keep them clean during the practical. Students should also wear surgical gloves during the practical. Domestic chlorine-based bleach can be used as disinfectant. This will usually have a concentration of less than 5%, which has a lower hazard rating. It should be labelled ‘irritant’. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 8.1 Microscopy of blood vessels Safety There are no special safety precautions. Apparatus and materials • • • • microscope prepared slides of elastic artery (aorta), muscular artery and vein prepared slide of a section of an organ such as mammalian kidney or thyroid gland, for observing capillaries calibrated eyepiece graticule Introduction In this practical, you will: • compare the structures of arteries, veins and capillaries as seen through the light microscope. You are provided with prepared slides of transverse sections of an elastic artery, a muscular artery and a vein from a small mammal, as well as a section of an organ in which to observe capillaries. The diagram below shows the tissues in a transverse section of a generalised mammalian blood vessel. You should also refer to Figure 8.5 on page 160 of the Coursebook, which shows sections through an artery, a vein and a capillary. Procedure 1 Use the low-power and medium-power objectives of a microscope to examine the elastic artery. Note that the structure of the elastic artery differs from that of the generalised blood vessel in the diagram above. (In each comparison here and below, consider the size of the lumen, and the thickness and composition of each tissue layer.) Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 2 Make a plan drawing to show the shape of the elastic artery and the distribution of the tissues within it. Annotate your drawing to show how the elastic artery differs from the generalised diagram above. 3 Use the calibrated eyepiece graticule to measure the thickness of the wall of the elastic artery. Add this information to your drawing and construct a linear scale for the drawing. 4 Examine the muscular artery with the low-power and medium-power objectives of your microscope. Note how the structure differs from both the diagram above and the elastic artery. 5 Make a plan drawing to show the shape of the muscular artery and the distribution of the tissues within it. Annotate your drawing to show clearly how the muscular artery differs from the elastic artery. 6 Use the calibrated eyepiece graticule to measure the thickness of the wall of the muscular artery. Add this information to your drawing and construct a linear scale for the drawing. 7 Examine the vein with the low-power and medium-power objectives of your microscope. Note how the structure differs from the generalised diagram and the two arteries you have looked at. 8 Make a plan drawing to show the shape of the vein and the distribution of the tissues within it. Annotate your drawing to show how the vein differs from the diagram above and from the two arteries that you have drawn. 9 Use the calibrated eyepiece graticule to measure the thickness of the wall of the vein. Add this information to your drawing and construct a linear scale for the drawing. 10 a Construct a table to show the differences in appearance between an elastic artery, a muscular artery and a vein. b Explain how the features of the two types of artery that are visible under the microscope are adaptations for their functions within the mammal. c Explain how the features of the vein that are visible under the microscope are adaptations for its function within the mammal. 11 Examine a section of an organ such as kidney or thyroid gland. Under high power, locate a capillary seen in cross-section. Use the calibrated eyepiece graticule to measure the diameter of the capillary. How does your measurement compare with the value given in the coursebook? 12 The wall of a capillary consists of a single layer of squamous epithelium. How does the size and structure of a capillary relate to its function? Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 8.2 Observing mammalian blood Safety Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Wear gloves when handling stains. Wash hands after handling biological material. Apparatus and materials • • • • • • • microscope slides cover slips (large, oblong type) clean, dry Pasteur pipette sample of sterile mammalian blood medical gloves slide-staining jar (or small beaker) containing Wright’s stain (a mixture of eosin and methylene blue in methyl alcohol) • • • • • • • two slide-staining jars (or small beakers) containing distilled water temporary mounting medium (e.g. Eukitt®) glass rod paper tissues prepared slide of mammalian blood stained to show white cells 100 cm3 beaker containing saline solution 100 cm3 beaker containing disinfectant Introduction In this practical, you will: • use a microscope to examine a smear of mammalian blood and make observations of different types of blood cell. If fresh blood is available, start at step 1 of the procedure. If you are using prepared slides, start at step 9. Procedure The blood used is sterile and it is not essential to wear gloves when handling it, but you may wish to do so to avoid getting any on your hands. Gloves should always be worn when handling the stain. 1 Use a Pasteur pipette to add a drop of sterile blood to one end of a clean, dry microscope slide. Immediately put the pipette into a beaker of saline solution. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 2 Use the edge of a second microscope slide to draw the blood across the first slide (see diagram below). This spreads the blood cells thinly along the surface, forming a blood smear. 3 Allow the slide to dry completely. This normally takes a minute or two. 4 Dip the slide in Wright’s stain for 30 seconds, then lift the slide out and allow most of the stain to run off the slide by holding the end against the wall of the staining jar. 5 Place the slide in the first jar of distilled water for 20 seconds, agitating gently. This removes excess stain. 6 Transfer the slide to the second jar containing distilled water, to rinse off any remaining stain. Leave it in the water for 20 seconds, agitating gently. 7 Remove the slide from the staining jar and leave it to dry by standing it vertically against the side of the staining jar. Rest the end of the slide on a tissue. 8 When the slide is completely dry, place it flat, with the smear uppermost, on a dry tissue. Using a glass rod, draw a thin line of temporary mounting medium along the middle of the length of the smear. Place the cover slip on the mounting medium and leave for 10 minutes before examining the slide under the microscope. If you are using prepared slides, start here 9 Use the low-power objective of a microscope to locate some cells on your slide. You will need to adjust the illumination and the focus of the microscope carefully to see the blood smear. Under low-power objective, cells will just be visible as tiny dots. 10 Switch to the medium-power then high-power objective to examine the cells in more detail. Even under high power (×400), the cells are very small. Most common are red blood cells (erythrocytes), which are stained reddish pink. Occasionally, among the red cells you will see larger cells with nuclei. These are the white blood cells. Search the slide to see how many types of white cell you can find. (See table on the following page – the details in the table are for information only, you do not need to know the names of the different types of white cell, just that white cells have roles in phagocytosis and antibody production.) 11 Make a drawing of some blood cells. Include three red cells and as many different types of white cell as you can identify using the diagram on the next page. You should certainly be able to find an example of each of the commoner types, neutrophils and lymphocytes. Label your drawings, and add the names of the cell types. Annotate your drawings with cell functions. 12 A red blood cell has a diameter of approximately 7 µm. Use this information to construct a scale bar for your drawing. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 13 After you have finished with them, place all used slides and cover slips in a beaker of disinfectant. Summary of appearance and functions of white cells (note: the Cambridge International AS and A Level Biology syllabus only expects you to have knowledge of the three commonest types – neutrophils, lymphocytes and monocytes) Type Diagram Appearance (when stained with Wright’s stain) Function(s) Normal relative abundance in humans / % neutrophil dark-purple, lobed nucleus; reddish, granular cytoplasm phagocytosis 30–75 lymphocyte large, round, darkpurple nucleus almost filling cell; little cytoplasm, non-granular B lymphocytes make antibodies 20–45 monocyte large, light-purple, bean-shaped nucleus; grey-blue non-granular cytoplasm phagocytosis: develop into macrophages 0–10 eosinophil pale, lobed nucleus; bright-red cytoplasmic granules involved in defence against larger parasites 0–6 basophil dark-purple nucleus; darkpurple cytoplasmic granules involved in allergies 0–2 Cambridge International AS and A Level Biology © Cambridge University Press 2014 T lymphocytes involved in cellmediated immunity 3 Practical 8.3 Heart dissection Safety Take care when using sharps. Wear surgical gloves. Dissection instruments and boards should be washed with disinfectant. Disinfectant is an irritant. Spillages should be washed off immediately using plenty of water. Wash hands after handling biological material. Apparatus and materials • • • • sheep heart (hearts of other animals, such as a goat or ox, can also be used) dissection board scissors forceps • • • • blunt seeker scalpel disinfectant surgical gloves Introduction In this practical, you will: • identify the structures visible on the surface of the heart • trace the pathway taken by blood as it flows through the heart • dissect the heart to show how its structure enables it to carry out its function as a pump. Procedure 1 Place the heart on a dissection board with the coronary vessels on the upper side. You should be looking at the heart as seen from the front of the animal (a ventral view), as shown in Figure 8.22 on page 173 of the Coursebook. Check that the left ventricle is on the right-hand side – it will feel solid when pressed. The right ventricle feels softer. 2 Use the photographs and drawings on pages 173–177 of the Coursebook to help you identify the following structures: left and right ventricles left and right atria aorta pulmonary artery vena cava pulmonary veins coronary arteries. Cut away any surplus fat to expose the major blood vessels at the top of the heart. 3 Make a drawing of the heart to show the main external features. Draw a ventral view, with the apex at the bottom of the drawing. Label and add a scale to your drawing. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 Cut into the vena cava and then through the right atrium. From there cut into the wall of the right ventricle down to its base. Clear out any clotted blood. Open up the chambers and wash out with water if necessary. 5 Examine the valve between the right atrium and the right ventricle. Measure the thickness of the walls of the two chambers. 6 Trace the pathway taken by blood as it leaves the right ventricle through the pulmonary artery. 7 Cut down the pulmonary artery to expose the semilunar valves. 8 Make a drawing of your dissection of the right side of the heart. Label the drawing. Use annotations to describe the appearance of the structures you have drawn and their functions. Add a scale to your drawing. 9 Cut into the left atrium and then into the left ventricle as far as the apex of the heart. Open the chambers and clean out as before. 10 Examine the valve between the left atrium and the left ventricle. Measure the thickness of the walls of the two chambers. 11 Trace the pathway of blood as it leaves the left ventricle through the aorta. 12 Cut down the aorta to expose the semilunar valves. Find the origin of the coronary arteries in the aorta. 13 Make a drawing of your dissection of the left side of the heart. Label the drawing. Use annotations to describe the appearance of the structures you have drawn and their functions. Add a scale to your drawing. 14 Record all your measurements of wall thickness in a suitable way. 15 If there are any spare hearts that have not been dissected, make some cross-sections by cutting across the hearts at different depths from top to apex. This will help you to appreciate the differences in the thickness of the chambers. 16 When you have finished, dispose of the dissected material as instructed, wash the dissection board and place the instruments into disinfectant. Wash your hands thoroughly. 17 a Draw up a table to compare the structure and appearance of the four chambers of the heart. b In one complete circuit through the heart, how does the output of blood from any one of these chambers compare with that from the other chambers? c Explain how the valves you have displayed in your dissection ensure that blood flows through the heart. d Calculate the ratio between the thickness of the wall of the left ventricle and that of the wall of the right ventricle. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 9 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 9.1 Investigating the mammalian gas exchange system It may be possible to obtain lungs with hearts attached from a butcher or abattoir. At the end of the practical, the dissected material should be wrapped up and disposed of safely. Students should place dissecting instruments in disinfectant solution and wash their hands thoroughly. Domestic chlorine-based bleach can be used as disinfectant. This will usually have a concentration of less than 5%, which has a lower hazard rating. It should be labelled ‘irritant’. Students can put their textbooks into clear plastic bags to keep them clean. Practical 9.2 system Microscopy of the tissues of the mammalian gas exchange Students will find it easier to understand the sections of trachea and lung that they see through the microscope and in photographs if they can dissect the organs as described in Practical 9.1. Activity 9.1 Smoking survey Students should be encouraged to construct simple hypotheses that can be tested easily by the survey. They will need to spend time discussing the methodology and how to present their results. It may be possible for them to use chi-squared (χ2) test with a contingency table on categorical data such as male/female versus smoker/non-smoker. Groups could present their findings to the rest of the class, either as a short presentation in PowerPoint format or using overhead transparencies. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 9.1 Investigating the mammalian gas exchange system Safety Take care when using sharps. Wear surgical gloves. Dissection instruments and boards should be washed with disinfectant. Disinfectant is an irritant. Spillages should be washed off immediately using plenty of water. Wash hands after handling biological material. Apparatus and materials • • • • lungs and bronchial system of sheep or goat dissection board scissors forceps • • • • scalpel blunt seeker surgical gloves disinfectant Introduction In this practical, you will: • dissect the lungs and bronchial system of a mammal to investigate the structure of the mammalian gas exchange system. Procedure 1 Place the lungs on a dissection board and arrange them on either side with their curved surfaces facing upwards and the tubes towards the top of the board. Straighten out the tubes. You should now be looking at the dorsal surface of the lungs, i.e. from the back of the animal. 2 Examine the external appearance of the gas exchange system. In order to see all of the organs you will have to turn over the lungs so you can see them from the ventral view. Identify the following structures: • lobes of the left and right lungs • trachea • larynx • diaphragm • oesophagus. The heart may still be attached to the lungs. If so, trace the pathway taken by blood as it flows from the heart to the lungs and from the lungs back to the heart. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 3 Address the following points and questions. a How many lobes of the lungs are there? b Describe what happens to the trachea as it passes between the lungs. c How can you tell the difference between the trachea and the oesophagus? 4 Examine the outside of the trachea and then run your finger, or a blunt seeker, down the inside. 5 Cut open the trachea from the top with a pair of scissors and examine the inside surface. 6 Follow the trachea down as far as you can by cutting it open, and find the points at which it branches into the lobes of the lung. Continue cutting into the lung tissue to follow these airways into the lungs. Examine the surface of the airways. 7 Make two cuts across the middle of the trachea either side of one of the hard bands that you will have found. 8 Address the following points and questions. a Describe the internal surface of the trachea. b How many major branches of the trachea have you found? c Where do these branches go? What are they called? d Describe the arrangement of the hard material in the wall of the trachea. What is it made of? Is the material arranged in the same way in the airways inside the lungs as in the trachea? If not, describe the differences. 9 Cut through the lung tissue and examine its appearance. Look for small tubes that have a different appearance from the airways that you have been following. These are blood vessels. The small white vessels are arteries; the small pink vessels are veins. If the heart is present, try tracing the veins back to the heart. (You will find it easier to locate some veins on the surface of the lungs and start from there.) 10 Address the following points and questions. a Describe the appearance of the lung tissue. Explain why it is like this. b What is the name given to the arteries in the lungs? What type of blood flows through them? c What is the name of the veins in the lungs? What type of blood flows through them? 11 When you have finished, dispose of the dissected material as instructed, wash the dissection board and place the instruments into disinfectant. Wash your hands thoroughly. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 9.2 Microscopy of the tissues of the mammalian gas exchange system Safety There are no special safety precautions. Apparatus and materials • • microscope prepared slide of section of mammalian trachea • • prepared slide of mammalian lung tissue calibrated eyepiece graticule Introduction In this practical, you will: • examine prepared slides of tissues from the mammalian gas exchange system and make drawings of the tissues Procedure 1 Examine a slide of a cross section of a trachea, using the low-power objective of your microscope. If you have carried out Practical 9.1, compare what you can see with your observations when you dissected the trachea. 2 Make a plan drawing of the trachea to show the arrangement of the tissues. Use Figure 9.3 on page 188 of the Coursebook to help you identify these. Do not draw individual cells, just areas of different tissues. Label the drawing. 3 Remove the slide from the microscope and measure the diameter of the trachea. Add this information to your drawing, as a scale. 4 Annotate the drawing to show how the structure of the trachea is related to its function. 5 Now examine the section of trachea under high power. Look carefully at the tissue closest to the lumen (the central air space). You should be able to find two cell types. Make a drawing of a small number of cells from this tissue. Use labels to identify the cells that you have drawn. Annotate the drawing to show how these structures are stained. 6 Examine a prepared slide of lung tissue under low power. Search the slide for bronchioles, alveoli, arteries and veins. You may need to look at several slides to find all of these structures. Look at Figure 9.3 on page 188 of the Coursebook to help you identify the structures. 7 Selecting an objective lens with a suitable power, observe a group of three or four adjacent alveoli and make a drawing of these. Label your drawing and use annotations to explain how alveoli are adapted for gaseous exchange. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 8 Use a calibrated eyepiece graticule to measure the distance between the air in an alveolus and a blood vessel. If you cannot do this, then measure the distance using Figure 9.5 on page 189 of the Coursebook. Note that the diameter of a red blood cell is 7 m. This should help you to calculate the distance that gases have to diffuse between the air and the blood. 9 How can you tell the difference between arteries and veins in the lung tissue? 10 How can you tell the difference between sections of trachea, bronchi and bronchioles when they are viewed through the microsope? Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 10 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 10.1 Testing bacteria for antibiotic sensitivity Suitable species of saprotrophic bacteria are Bacillus subtilis and Micrococcus luteus. Chromobacterium lividum, which produces dark purple colonies, can also be used, although it needs glycerol in the nutrient agar for growth. The principles of aseptic technique should be explained to the students. It is not possible for this resource to deal with the details of aseptic technique, but teachers should note that aseptic methods must be used at all stages in preparation of materials and growth media, transfer of cultures and disposal of used apparatus and plates. All used or contaminated materials should be steam sterilized in an autoclave or pressure cooker. Further information on aseptic technique and microbiological laboratory practice can be obtained from various sources, e.g. • www.nuffieldfoundation.org/practical-biology/aseptic-techniques • www.microbiologyonline.org.uk/teachers/safety-information/good-microbiological-laboratorypractise This practical investigates the effects of antibiotics, using harmless species of cultured bacteria. Do not attempt to culture bacteria from other sources such as soil or hands, which could contain pathogenic species of microorganism. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 10.1 Testing bacteria for antibiotic sensitivity Safety Wear surgical gloves. Aseptic technique should be used throughout. Disinfectant is an irritant. Spillages should be washed off immediately using plenty of water. Plates should be autoclaved after the investigation. Apparatus and materials • • • • • broth cultures of two species of bacteria Mastring™ antibiotic paper rings two Petri dishes containing nutrient agar sterile forceps sterile glass pipette • • • • • marker pen or labels sticky tape incubator set at 25 °C beaker of disinfectant surgical gloves Introduction In this practical, you will: • test two species of bacteria for their sensitivity to a range of antibiotics. When a patient has a bacterial infection, doctors need to know which antibiotic will be most effective in killing the organism responsible. Eight antibiotics are supplied on a paper ring called a Mastring™. The Mastring™ is coded as shown in the table below. Coding for antibiotics on Mastring™ Letter code Antibiotic Disc colour C chloramphenicol (25 μg) green E erythromycin (5 μg) red FC fusidic acid (10 μg) dark green MT methicillin (10 μg) gold NO novobiocin (5 μg) lilac PG penicillin G (1 unit) pink S streptomycin (10 μg) white T tetracycline (25 μg) brown Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Procedure 1 You are provided with broth cultures of two species of bacteria. Using a sterile glass pipette, transfer a pipette full of one broth culture onto a nutrient agar plate. 2 Swirl the plate around so that the liquid covers the whole of the agar surface. Discard the excess liquid into a beaker of disinfectant. 3 Using sterile forceps, transfer a Mastring™ ring to the centre of the agar. 4 Replace the lid and tape it on. Label the base of the plate with your name, the date and the species of bacterium used. 5 Repeat steps 1–4 with the second species of bacterium. 6 Place the plates upside down (so the label is facing upwards) in an incubator at 25 °C until bacterial colonies have grown (about 24 hours). 7 Examine the plates without opening them for translucent zones around each of the antibiotic discs. Measure the diameter of the translucent zones, and record your results in a suitable format. 8 List the order of effectiveness of the antibiotics against each bacterium. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 11 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Activity 11.1 Vaccination Teachers should warn students to take care to use reliable sources such as the World Health Organization and other respected medical authorities when doing their research. There are sources of misinformation about vaccination on the Internet. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Chapter 12 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 12.1 Investigating the effect of temperature on dehydrogenase activity in yeast Both TTC and yeast are low hazard. Actively respiring yeast suspension can be made by mixing 10 g of dried yeast with 100 cm3 of water and adding 5 g of glucose. The suspension should be prepared 1 hour before use. It is difficult to produce an end-point colour standard, since the mixture becomes progressively pinker with time. This is a limitation of the experiment and, at best, the end point can only be judged to about ±15 seconds. A suitable piece of pale pink card could be used for comparison of the colour. A colorimeter cannot be used with a cloudy suspension. The optimum temperature is higher than students expect, usually about 50–60 °C, with some decrease in dehydrogenase activity at 70 °C, as the enzymes start to denature. This may be due to the fact that denaturation is a time-dependent process, so that the equilibration time does not fully denature the enzymes. It may also be that brewer’s yeast has been selected to have a high optimum temperature. Another limitation is that it takes different amounts of time to equilibrate the tubes at different temperatures: it is not possible to control this variable. However, use of a thermostatic water bath would improve the precision of temperature control. Respiration of the yeast cells will be partly aerobic but, in a boiling tube with little exposure to air, probably mainly anaerobic. Students could be prompted to suggest methods of oxygenating the mixture to allow aerobic respiration to continue, so that the rates of respiration under aerobic and anaerobic conditions might be compared. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 12.2 Investigating the rate of respiration of small organisms using a simple respirometer Soda lime contains a mixture of sodium, potassium and calcium hydroxides, and is very corrosive: label the container in which the muslin bags of soda lime are supplied. Eye protection should be worn throughout the practical. Ensure students wash their hands after handing the living organisms. There is probably too much material in this practical to carry out in a single laboratory session. The work will need to be spread over two sessions, or shared between groups. Instead of using a marker pen and ruler, mm-scaled adhesive tape can be used. This is available from educational suppliers. An alternative is to use a graduated pipette of a suitable volume (e.g. 1 cm3) instead of a capillary tube. This avoids the need for calculating the volume (step 7). Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 12.1 Investigating the effect of temperature on dehydrogenase activity in yeast Safety Take care when using heating apparatus. Wash hands after handling biological material. Apparatus and materials • • • • • • • • boiling tubes 10 cm³ syringe large beaker (water bath) tripod Bunsen burner test-tube holder stirring rod 100 cm³ of a 10% suspension of actively respiring yeast • • • • • • • • test-tube rack 1 cm³ syringe thermometer gauze heat-resistant mat stopwatch distilled water 10 cm³ of 0.5% triphenyltetrazolium chloride (TTC) solution Introduction In this practical, you will: • carry out a procedure at different temperatures between room temperature and 70 °C, to investigate the effect of temperature on the activity of dehydrogenases in yeast. Actively respiring yeast contains dehydrogenase enzymes. Normally when the yeast respires, hydrogens are removed from the respiratory substrates and passed to hydrogen acceptors such as NAD. It is possible to use an artificial hydrogen acceptor called triphenyltetrazolium chloride (TTC) to show the activity of these enzymes. TTC is a redox indicator. It is colourless when oxidised and pink when reduced. If TTC is mixed with yeast cells in suspension, some hydrogens will be passed to the TTC, causing it to be reduced and change from colourless to pink. Procedure 1 Use syringes to place 10.0 cm3 of the yeast suspension into a boiling tube and add 1.0 cm3 of distilled water. This tube will act as a starting-point colour standard for the reaction, so that you can see when a colour change has taken place in the experimental tubes. 2 Prepare a water bath at room temperature. Measure and record the temperature of the water in the bath. 3 Place 10.0 cm3 of the yeast suspension into a clean boiling tube. Place 1.0 cm3 of TTC solution into a second clean tube. 4 Place the two tubes in the water bath for several minutes to allow them to equilibrate to the temperature of the water. How can you check they have equilibrated? Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 5 Mix the contents of the tubes by adding the yeast to the TTC. Shake the tube and return it to the water bath. Start the stopwatch. 6 Note the time taken for a definite pink colour to develop, by comparison with the starting-point colour standard. Shake the tube gently at intervals to prevent the yeast settling to the bottom of the tube. 7 Repeat steps 1–6 at five more temperatures between room temperature and 70 °C. At each temperature, be careful to maintain the temperature of the water bath as constant as possible. 8 Present your results as a table. An arbitrary measure of the rate of reaction can be found by 1 calculating the reciprocal of the time taken for the colour to develop (rate = ). time 1000 If you calculate the values of , this will give more manageable numbers. time (in seconds) Add these values to the table. 9 Plot a graph of the rate of reaction (arbitrary units) against temperature. 10 Address the following points and questions. a What are the roles of dehydrogenase enzymes in respiration? b Describe what the graph tells you about the activity of dehydrogenases in yeast between room temperature and 70 °C. c Explain why the activity is affected in this way. d What are the main sources of error and limitations of this experiment? e How could you improve the design of the experiment? Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 12.2 Investigating the rate of respiration of small organisms using a simple respirometer Safety Wear eye protection. Soda lime is corrosive. If if it is spilled on skin, wash it off immediately with plenty of water. Wash hands after handling biological material. Apparatus and materials • • • • • • • two 10 cm3 plastic syringes with short lengths of rubber tubing attached two 20 cm lengths of glass capillary tubing of known internal diameter water bath (trough or wide beaker) small beaker of manometer fluid (coloured water containing a drop of detergent) marker pen stopwatch aluminium foil • • • • • • • two bags of soda lime wrapped in muslin to fit inside syringe maggots, mealworms or germinating mung beans paper tissues balance weighing to at least 0.01 g ruler blunt forceps eye protection Introduction In this practical, you will: • measure the rate of respiration of some organisms (part A of the procedure) • find the effect of a change in temperature on the rate (part B) • measure respiratory quotients of the organisms (part C). A respirometer can be used to measure the rate of uptake of oxygen by small organisms, such as insects or germinating seeds. There are several different designs of respirometer. Figure 12.19 on page 280 of the Coursebook shows a respirometer with a built-in control. In this simple version, the organisms are placed in the barrel of a syringe. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 As the organisms respire, they use up oxygen. Any carbon dioxide produced is absorbed by soda lime. The rate of uptake of oxygen can be found from the rate of movement of the fluid in the capillary tube. Procedure A Measuring the rate of respiration 1 Select some small living organisms, such as maggots, mealworms or germinating mung beans. Check that they will fit comfortably into the barrel of a syringe, as shown in the diagram. Weigh the organisms on a piece of aluminium foil. 2 Place some soda lime wrapped in muslin in the bottom of the barrel of the syringe. Introduce the organisms that you have weighed into the syringe. Now carefully insert the plunger about half way down the syringe. 3 Attach a length of glass capillary tube to the rubber tubing on the syringe. Place the respirometer on the bench for about two minutes. Dip the end of the capillary tubing into the beaker of manometer fluid. A small amount of coloured water will enter the capillary tube to make the respirometer shown in the diagram. This is your experimental respirometer. 4 Place the respirometer horizontally on the bench and mark the position of the meniscus in the glass capillary tube. Start a stopwatch. 5 Prepare another respirometer with the same mass of soda lime but do not add any organisms. This respirometer is your control. Mark the position of the meniscus in the same way as in step 4. Note the time. 6 After five minutes, mark the new position of the meniscus in the experimental respirometer tube (if five minutes is not sufficient, wait for a suitable length of time). Similarly record any movement of the meniscus in the control respirometer. 7 From these readings, calculate the volume of oxygen used (in cm3) by the organisms. If the internal radius of the capillary tube (r) is known, the volume is found from the formula: volume of oxygen used = distance moved by meniscus × πr2 8 Now find the volume of oxygen used per unit mass of organisms per minute, using the formula: volume of oxygen used = 9 a total volume of oxygen used (from step 7) mass of organisms ´ time What are the advantages of using of this method of measuring rates of respiration, and what are its limitations? b How should you use the readings from the control respirometer? B Changing the temperature 1 Design an investigation using the respirometer shown in Figure 12.19 on page 280 of the Coursebook to compare the rate of respiration of the organisms at two temperatures within the physiological range, such as 20 °C and 30 °C. 2 What effect would an increase in temperature have on the rate of respiration of the organisms? Explain why temperature would affect their rate of metabolism. C Measuring respiratory quotients 1 Measure the rate of uptake of oxygen by the organisms as in part A. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 2 Detach the capillary tubes and dismantle the syringes of the respirometers. Use forceps to remove the soda lime bags. Wipe out the inside of the syringes with a tissue. Replace the organisms in the experimental respirometer, replace the plungers and reattach the glass capillary tubing to the syringes. 3 Place the respirometers horizontally on the bench for about two minutes. Mark the position of the meniscus in the capillary tubes. 4 After five minutes mark the new position of the meniscus in the experimental respirometer. Also record the movement of the meniscus in the control respirometer. 5 The respiratory quotient (RQ) = volume of carbon dioxide produced per unit time volume of oxygen used per unit time You have measured the rate of uptake of oxygen in step 1. Let this = x cm3 min–1. In step 4, the manometer contains no soda lime to absorb carbon dioxide, so if the volume of oxygen used up equals the volume of carbon dioxide produced, the respiratory quotient (RQ) = 1. When more carbon dioxide is produced than oxygen absorbed, the scale shows an increase in the volume of gas in the respirometer. Let this = y cm3 min–1. The RQ can then be calculated from: RQ = x+ y x Conversely, when less carbon dioxide is produced than oxygen absorbed, the volume of gas in the respirometer decreases (let this volume z cm3 min–1). The calculation is now: RQ = x– z x Using your values from steps 1 and 4, calculate the respiratory quotient of the organisms. Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Chapter 13 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 13.1 Investigating pigments in a leaf by paper chromatography Both propanone (acetone) and hexane (petroleum ether) are highly flammable and harmful. Label containers accordingly. Turn off the electricity supply to avoid sparks. The chemicals are irritating to the skin and eyes and have a narcotic effect if inhaled. Prolonged exposure to the vapours should be avoided. It is important to use freshly prepared chlorophyll extract for this investigation. Students could extract and separate pigments from different plant species for comparison. Algae, mosses or ferns could be used, to see if there are differences between the pigments present in these and flowering plants. Practical 13.2 Investigating the light dependent stage of photosynthesis All solutions are low hazard. The normal safety precautions associated with the use of chemicals apply. To make a standard 0.05 mol dm–3 pH 7.0 phosphate buffer solution, dissolve 4.48 g of disodium hydrogenphosphate-12-water (Na2HPO4·12H2O) and 1.70 g of potassium dihydrogenphosphate (KH2PO4) in about 300 cm3 distilled water. Make up to 500 cm3 with more distilled water, then store in a refrigerator at 0–4 °C until needed. To make the ‘isolation medium’, dissolve 24.23 g of sucrose and 0.19 g of potassium chloride in about 150 cm3 of the phosphate buffer solution. Make up to 250 cm3 with more of the buffer solution, then store in a refrigerator at 0–4 °C until needed. Use at room temperature. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 To make the ‘reaction medium’, dissolve 0.20 g of DCPIP and 0.93 g of potassium chloride in about 150 cm3 of the phosphate buffer solution. Make up to 250 cm3 with more of the buffer solution, then store in a refrigerator at 0–4 °C until needed. Use at room temperature. The investigation can be tried with filters of other colours such as blue. A further control for the experiment would be a tube containing isolation mixture alone (i.e. DCPIP but no leaf extract) to determine whether or not leaf extract is needed for the reaction. Light intensity and temperature were not controlled in this investigation. Students should explain that the dye is reduced by electrons emitted from the chlorophyll in the presence of light, and compare the rate of reduction in green, red and white light. Practical 13.3 Investigating the effects of limiting factors on the rate of photosynthesis All solutions are low hazard. The normal safety precautions associated with the use of chemicals apply. In part B, the light intensity will decrease with distance following the inverse-square law. If the distance (D) is measured in metres, a graph of rate of photosynthesis (rate of oxygen production) 1 against 2 produces a curve which is fairly linear at lower light intensities but starts to level off at D high light intensities (i.e. with the lamp close to the plant). Students may suggest that heat from the lamp will affect temperature of the syringe. This is true – a transparent heat shield or ‘cold’ light source could be used instead of a filament lamp. In part C, the plant should be supplied with a high concentration of hydrogencarbonate ions, so that the supply of carbon dioxide is not a limiting factor, and a high light intensity (lamp at 10 cm from the plant). The two temperatures should be chosen from the physiological range, e.g. room temperature (about 20 °C) and 30 °C. A water bath can be used to control temperature (although in practice this would be difficult with the apparatus used here). Another investigation is to find the effect of changing the wavelength of light, using suitable coloured filters, with the lamp at a fixed distance from the plant. The rate should be high with either red or blue light, but much lower with green light, as predicted from an absorption spectrum of chlorophyll (Figure 13.16 on page 295 of the Coursebook). Practical 13.4 Adaptations of the leaves of C4 plants Prepared slides of leaf sections of maize and sorghum are available from suppliers such as Philip Harris Ltd., as well as slides with two sections, comparing leaves of C3 and C4 plants. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 13.1 Investigating pigments in a leaf by paper chromatography Safety Wear eye protection. Propanone and the solvent are both highly flammable; the electrical supply should be turned off to avoid sparks. Both chemicals are irritating to the eyes and skin, and cause drowsiness if inhaled. The solvent (hexane) is also harmful if inhaled or swallowed. Prolonged exposure to the vapours should be avoided. Wear gloves to avoid touching the chromatography paper. Wash hands after handling biological material. Apparatus and materials • • • • • • • • • fresh leaves, such as spinach (Spinacia sp.) or nettle (Urtica sp.) fresh leaves from a different species pestle and mortar clean sand two 100 cm3 beakers filter funnel and filter paper two boiling tubes with corks to fit pins test-tube rack • • • • • • • chromatography paper, approximately 15 × 2 cm (Whatman No. 1) surgical gloves dropping pipette scissors fine glass microcapillary tubes or pins 20 cm3 of 90% propanone (acetone) in a stoppered tube or bottle 10 cm3 of solvent (1 part propanone to 9 parts hexane) in a stoppered tube or bottle Introduction In this practical, you will: • separate and identify the pigments present in a leaf by paper chromatography • compare the pigments present in the leaves of different plants. Procedure 1 Cut the leaves into small pieces and place them in a mortar. Add some propanone and a little clean sand. Grind the leaves with the pestle until you have a dark green solution of chlorophyll. Filter the mixture and collect the solution in a beaker. 2 Pipette the propanone/hexane solvent into a boiling tube, to a depth of about 15 mm. Seal the tube with a cork and leave it for about 10 minutes, so that the air inside becomes saturated with the solvent vapour. 3 Cut a piece of the chromatography paper so that it fits inside an empty boiling tube without touching the sides. Draw a pencil line 25 mm from one end of the paper. Fold the other end of the paper and use the fold to attach the paper to a cork with a pin. Replace the cork and check that the paper almost reaches the end of the tube. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 Remove the cork and, using a fine glass microcapillary tube or the head of a pin, place a small drop of the pigment mixture on the centre of the line. Allow the spot to dry. Repeat this several times, allowing successive drops to dry. This will build up a small but concentrated spot of chlorophyll. 5 Suspend the chromatography paper inside the first boiling tube, so that the end of the paper is in the solvent, but the solvent does not reach the level of the spot of pigment. 6 Stand the tube in dim light for about 30 minutes, until separation of the pigments has taken place. Then remove the paper and quickly use a pencil to mark the position reached by the solvent (the solvent front). Leave the paper (chromatogram) in dim light to dry. It is a good idea to draw around the pigment spots in pencil and note their colours, before they fade. 7 Measure the distance moved by each pigment from the origin (distance a) and the distance moved by the solvent front from the origin (distance b). You should measure to the middle of each pigment spot. Dividing a by b gives you the relative front value (Rf). The expected Rf values for different pigments, using this solvent, are shown in the table below. Values for Rf of various leaf pigments in propanone/hexane solvent Pigment Colour Rf value carotene yellow 0.95 phaeophytin yellow–green 0.81 xanthophyll yellow–brown 0.71 chlorophyll a blue–green 0.65 chlorophyll b green 0.45 8 Determine the Rf values for each spot of pigment that you can see. Compare your values to those in the table, and identify the pigments (you may have more than 5). 9 Suggest three factors that might affect the Rf values. 10 Repeat the investigation, using leaves from a different species of plant. Compare the pigments present in the leaves of the two species. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 13.2 Investigating the light dependent stage of photosynthesis Safety The normal safety precautions associated with the use of chemicals apply. Wash hands after handling biological material. Apparatus and materials • • • • • • • • • about 50 cm2 of fresh leaves such as spinach (Spinacia sp.), cabbage (Brassica sp.) or lettuce (Lactuca sp.) scissors glass rod five lengths of fine glass capillary tubing, such as melting-point tubing aluminium foil dropping pipette two flat-bottomed plastic tubes red and green filters white tile • • • 10 cm3 of a solution labelled ‘isolation medium’ (4 mol dm–3 sucrose and 0.01 mol dm–3 potassium chloride dissolved in a standard pH 7.0 buffer solution). This solution should be chilled before use. 10 cm3 of a solution labelled ‘reaction medium’ (0.003 mol dm–3 2,6-dichlorophenolindophenol (DCPIP) and 0.05 mol dm–3 potassium chloride dissolved in a standard pH 7.0 buffer solution). This solution should be chilled before use. bench lamp Introduction In this practical, you will: • investigate the effect of different conditions on the light dependent reactions of photosynthesis, using DCPIP as a redox indicator. DCPIP is a redox indicator that is blue in its oxidised form and colourless when reduced. The apparatus and solutions are maintained at a low temperature until the reaction is started in order to reduce enzyme activity. Procedure 1 Remove any midrib or large veins from the leaves supplied. Cut the leaves into small pieces and place these in a cold flat-bottomed plastic vial. Add 2 cm3 of the chilled isolation medium and grind the leaves with a glass rod. 2 Pour off the extract into a second plastic vial covered with foil to keep the extract in the dark. Remove a sample of the extract by inserting a length of fine capillary tubing into it. Lay the sample tube on a white tile and use this as a colour standard with which to compare the contents of the subsequent samples. 3 Using a dropping pipette, add 10 drops of reaction medium to the leaf extract in the foil-covered vial and gently shake the vial to mix the contents. 4 Take a second piece of fine capillary tubing and remove a sample of the mixture from the vial. Quickly wrap this sample tube in foil to prevent any exposure to light, and lay it on the tile next to the first sample tube. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 5 Take three more pieces of fine capillary tubing and stand them simultaneously in the extract mixture. Quickly place one of the pieces of tubing on the tile under a green filter, one on the tile under a red filter and one on the tile without any filter, next to the colour standard. At this stage, the contents of the pieces of tubing should be dark blue–green. If they are not, start the investigation again. 6 Direct a light at the pieces of tubing and note the colour of their contents every three minutes for fifteen minutes. Record your observations in a table like the one below. Record of results Tubing Contents Colour at 3-minute intervals 0 min 7 a 1 colour standard 2 extract + DCPIP in dark 3 extract + DCPIP in green light 4 extract + DCPIP in red light 5 extract + DCPIP in white light 3 min 6 min 9 min 12 min Explain the purpose of the colour standard (sample 1) and the control (sample 2). b What further control should have been set up and why? c Explain your results in terms of the light dependent stage of photosynthesis. You should compare the rate of reduction of the DCPIP in each sample with the control sample. d In which organelle and precisely where in the organelle is the DCPIP reduced? e State one important variable which was not controlled in this investigation. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 15 min Practical 13.3 Investigating the effects of limiting factors on the rate of photosynthesis Safety Take care when using sharps. Avoid touching electrical apparatus with wet hands. Wash hands after handling biological material. Apparatus and materials • • • • • • • fresh, washed Canadian pondweed scalpel tile large beaker of aerated distilled water 10 cm3 syringe 20 cm length of glass capillary tubing, internal diameter 1 mm rubber tubing to connect syringe to capillary tubing • • • • • • retort stand, boss and clamp lamp with 60 W bulb stopwatch 25 cm3 of 0.05 mol dm–3 sodium hydrogencarbonate solution 25 cm3 of 0.10 mol dm–3 sodium hydrogencarbonate solution 25 cm3 of 0.15 mol dm–3 sodium hydrogencarbonate solution Introduction In this practical, you will: • investigate the effect of different concentrations of carbon dioxide on the rate of photosynthesis of a plant (part A) • investigate the effect of light intensity on the rate of photosynthesis (part B) • plan an investigation to find the effect of temperature on the rate of photosynthesis (part C). Carbon dioxide concentration, light intensity, and temperature can each act as a limiting factor on the rate of photosynthesis The plant you will use is Canadian pondweed, so the carbon dioxide is supplied as hydrogencarbonate ions in solution. Procedure A Investigating the effect of carbon dioxide concentration on the rate of photosynthesis 1 Collect some pieces of Canadian pondweed (Elodea canadiensis) and cut them across internodes into approximately 5 cm lengths. Transfer them to a well-illuminated beaker of distilled water for a few minutes and select two pieces that are bubbling rapidly and regularly. 2 Transfer the pieces into the barrel of a 10 cm3 syringe. Fill the syringe with aerated distilled water and replace the plunger. Invert the syringe and expel any air. Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 1 3 Using a short length of rubber tubing, fix a length of capillary tubing to the nozzle of the syringe and clamp the apparatus vertically (see diagram below). 4 Gently push down the plunger to force the water into the top of the capillary tubing. Place a lamp about 10 cm from the syringe. Allow the pondweed to equilibrate for a few minutes. 5 Find the rate of movement of the meniscus over a suitable period of time. Assuming that the movement is due to oxygen production by the plant, this will be proportional to the rate of photosynthesis. The volume of oxygen produced will be equal to the distance moved by the meniscus multiplied by the internal cross-sectional area of the tubing. The area can be calculated if the internal radius of the tubing (r) is known, using the formula πr2. rate of oxygen production = rate of movement of meniscus × πr2 6 Repeat this procedure, using: 0.05 mol dm–3 sodium hydrogencarbonate solution instead of the aerated distilled water 0.10 mol dm–3 sodium hydrogencarbonate solution 0.15 mol dm–3 sodium hydrogencarbonate solution. Each time, allow the pondweed to equilibrate to the new conditions before taking readings. You should use the same pieces of weed in each solution. 7 Present your results in a suitable form. 8 a What effect did an increase in concentration of hydrogencarbonate ions have on the rate of photosynthesis? b As the molarity of the hydrogencarbonate solution was increased by equal increments did the rate of photosynthesis increase by equal amounts too? If not, why not? c If you continued to increase the molarity of the hydrogencarbonate solution, would you expect the rate of photosynthesis to continue increasing? d What other conditions might affect the rate of photosynthesis? Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 2 B Investigating the effect of light intensity on the rate of photosynthesis 1 Set up the apparatus as described in part A, steps 1–4, filling the syringe with 0.15 mol dm–3 sodium hydrogencarbonate solution instead of distilled water, to ensure that carbon dioxide is not a limiting factor. 2 Dim the background lighting in the laboratory by closing any blinds and turning off the room lights. 3 Place the lamp 10 cm from the syringe. Allow the pondweed to equilibrate for a few minutes, and then measure the rate of movement of the meniscus. 4 Move the lamp so that it is 15 cm from the syringe, and measure the rate again. 5 Repeat the measurements, with the lamp at increasing distances from the syringe. Increase the distance by 5 cm intervals, until there is no production of oxygen by the plant. Each time, make sure you allow the plant to equilibrate to the new light intensity. 6 Calculate the volume of oxygen produced by the plant at different distances and record these values in a table. Plot a graph of rate of oxygen production (= rate of photosynthesis) against distance of the light source (D). 7 The intensity of light produced by a light source is proportional to the reciprocal of the distance from the source squared (1/D2). Calculate 1/D2 for each distance of the lamp, and plot a graph of the rate of photosynthesis against these values. The rate should level off at higher light intensities, as shown in Figure 13.7, page 291 in the Coursebook. Does your graph look like this? C Planning an investigation to find the effect of temperature on the rate of photosynthesis 1 Design an investigation to find out how two different temperatures affect the rate of photosynthesis of pondweed, using the apparatus above. In your investigation, you should consider the choice of temperatures you will use, and how to control other variables. Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 3 Practical 13.4 Adaptations of the leaves of C4 plants Safety There are no special safety precautions. Apparatus and materials • • • prepared slide of a transverse section of a leaf of a C4 plant such as maize (Zea mays) or sorghum (Sorghum sp.) microscope calibrated eyepiece graticule Introduction In this practical you will: • examine a cross-section through a leaf of a C4 plant and consider how its structure is adapted to its function. Tropical grasses such as maize, sorghum and sugar cane are known as C4 plants. The leaves of C4 plants have a specialised photosynthesis biochemistry and a structure that differs from the leaves of C3 plants. They fix CO2 into a 4C compound in specialised mesophyll cells, and pass this fixed carbon to bundle sheath cells, where it is decarboxylated and the CO2 used in the Calvin cycle. This arrangement of leaf tissues isolates the Calvin cycle from atmospheric oxygen, avoiding photorespiration. Photorespiration is a particular problem for tropical plants that live in conditions of high temperatures and high light intensities (see Coursebook, Chapter 13, pages 293–295). Procedure 1 Examine a transverse section of a leaf of a C4 plant such as maize or sorghum through the microscope. Find a vascular bundle in the leaf and identify the bundle sheath cells forming an inner ring around the vascular bundle, as well as the outer ring of mesophyll cells around the bundle sheath. 2 Make a low power plan drawing of the leaf section. Label the specialised tissues you have identified in step 1. Annotate these tissues to explain how they are an adaptation for the plant’s survival in a tropical habitat (see Figure 13.13, page 294 in the Coursebook). Add a title and scale to your drawing. 3 Observe the tissue of the vascular bundle under high power. Draw one or two bundle sheath and mesophyll cells. Label and annotate the drawing and add a title and scale. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Chapter 14 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 14.1 Investigating the structure of the kidney The kidneys supplied by butchers do not usually have the ureters or blood vessels attached. You will need to ask for this when ordering them. 20 volume hydrogen peroxide solution must be labelled ‘irritant’. Students must wash their hands after handling biological material. Practical 14.2 Investigating the structure of kidney tubules Students will benefit from seeing whole, fresh kidneys before studying the histology of the kidney. They could also be shown photomicrographs of kidney tissue to supplement Figure 14.7 on page 305 of the Coursebook. Prepared slides of longitudinal sections of mammalian kidney should show cortex, medulla, pyramids and pelvis. These are sometimes described as horizontal sections. Slides of vertical sections of kidney show cortex and medulla. There are also slides of transverse sections of kidney, which show only the cortex. Step 8 asks students to construct a table of appearance and function of a number of kidney structures. Students’ tables should look similar to the one on the following page. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Epithelium Microvilli Width / m capillary: squamous outer epithelium: squamous 100 • ultrafiltration of blood 120 • collection of filtrate 45 • • • selective reabsorption active transport of Na+ and Cl– co-transport of glucose 15 • loss of water from tubule by osmosis 25 • active transport of Na+ and Cl– out of tubule 45 • • selective reabsorption active transport of Na+ out of tubule active transport of K+ into tubule reabsorption of water Glomerulus • Bowman’s capsule • Proximal convoluted tubule • cuboidal Thin loop of Henle • squamous Thick loop of Henle • cuboidal Distal convoluted tubule • cuboidal Collecting duct • (few) Function • cuboidal or columnar 50–60 Cambridge International AS and A Level Biology © Cambridge University Press 2014 • 2 Practical 14.1 Investigating the structure of the kidney Safety Wear eye protection. Take care when using sharps. Hydrogen peroxide solution can bleach clothing or skin and cause burns. Spillages should be washed off immediately using plenty of water. At the end of the practical, the kidneys and any material cut from them should be wrapped up and disposed of safely. Dissection instruments and boards should be washed with disinfectant. Wear surgical gloves if you wish. Wash hands after handling biological material. Apparatus and materials • • • • • • fresh whole lamb’s kidney with vessels and ureter attached dissecting scissors forceps blunt seeker scalpel surgical gloves • • • • • dissecting board 10 cm3 of 20 volume hydrogen peroxide in labelled container dropping pipette hand lens eye protection Introduction In this practical, you will: • examine the structure of the kidney and the relationships between its different parts. You are provided with a lamb’s kidney. Note that it does not have quite the same structure as a human kidney, nor is it quite like the rodent kidneys that are normally used to make prepared microscope slides (Practical 14.2). Procedure 1 Look at a diagram showing the position of the kidneys in the body of a mammal (for example, Figure 14.5, page 305 of the Coursebook). 2 Examine the whole kidney provided. This should have parts of the blood vessels and ureter still attached. See if you can find and identify these structures – you will probably have to remove some fat to locate them. The concave part of the kidney where they are attached is called the hilum. Note the overall shape of the kidney and place it on a board with the hilum to the left. 3 Remove all of the fat surrounding the kidney and make a labelled drawing of the kidney to show its shape and external features. If the ureter and blood vessels are very short, use dotted lines on your drawing to show where they would be. Measure the length of the kidney and include a scale on your drawing. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 4 Use a scalpel to make a cut along the edge of the kidney on the convex side opposite the hilum. This should follow the line you drew to show the outer edge of the kidney. Do not cut all the way through the kidney yet. 5 You should now be able to see into the slit that you have cut. Inside there should be some white tissue visible. This is the pelvis. On each side of the slit you will see pink tissue, partly covering the pelvis (Figure 14.6 on page 305 of the Coursebook). This is the medulla. The darker tissue towards the outside of the kidney is the cortex. 6 Look for a hole in the pelvis. Push a blunt seeker through the hole and see where it emerges. If you are successful, you should find that it comes out through the ureter at the hilum. 7 Now continue to cut all the way through the kidney to produce two longitudinal sections. Note the colours of the pelvis, medulla and cortex. As far as possible, trace the path of the renal artery from the hilum into the cortex. The renal vein follows the same path, but is much more difficult to see – try using a hand lens. In the cortex, the artery branches to supply the glomeruli and kidney tubules. 8 Use a hand lens to examine the cut surface of one section. In the cortex, you will see tiny red spots. These are glomeruli. In the medulla, you should be able to see striations that run from the cortex towards the pelvis. These are loops of Henle and collecting ducts. Compare what you see with Figure 14.7 on page 305 of the Coursebook. 9 Use a pipette to add some drops of hydrogen peroxide to one of the cut surfaces. After the vigorous effervescence has cleared, you should be able to see the structures within the cortex and the medulla more clearly. 10 Make a labelled drawing of one of the cut surfaces of the kidney, use the same scale as your first drawing. Annotate the drawing to show the functions of the structures that you have labelled and add a scale. 11 When you have finished, dispose of the dissected material and board as instructed, and place the dissecting instruments into disinfectant. Wash your hands thoroughly. 12 Address the following points and questions. a Describe the differences in appearance of the cortex, medulla and pelvis in the kidney that you dissected. b Why was there vigorous effervescence when you added some drops of hydrogen peroxide to the cut surface of the kidney? c The kidneys make up about 0.5 to 1.0% of the total mass of the body, but they receive about 25% of the output of the heart. Explain why the kidney has such a large blood supply. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 14.2 Investigating the structure of kidney tubules Safety There are no special safety precautions. Apparatus and materials • • • prepared slide of LS of mammalian kidney, labelled slide 1 hand lens microscope • • prepared slide of VS of mammalian kidney, labelled slide 2 eyepiece with calibrated graticule Introduction In this practical, you will: • investigate the fine structure of the kidney. Procedure 1 Use a hand lens to look at slide 1, which is a stained longitudinal section (LS) of the kidney. Make a drawing of the section. Label your drawing to show the different regions of the kidney. Add a scale to your drawing. 2 Use the hand lens to look carefully for renal capsules. Indicate on your plan drawing the region where these structures are found. 3 Examine slide 2, which is a stained, vertical section of the kidney. Use the low-power objective of your microscope and concentrate on the area with glomeruli. 4 Using Figure 14.7 on page 305 of the Coursebook to help you, make a high-power labelled drawing to show the structure of one Bowman’s capsule and glomerulus. In your drawing, show as much detail of the cells of the capsule and glomerulus as you can see. 5 Use a calibrated eyepiece graticule to measure the distance across the capsule. Calculate the magnification of your drawing and add this to the drawing. 6 Make a high-power drawing of cross sections of proximal and distal convoluted tubules. These are found in the same region as the glomeruli. Draw to the same scale as your drawing of the Bowman’s capsule and glomerulus. Annotate your drawing, noting the colours of the nuclei and cytoplasm in the cells that you have drawn. 7 Move the slide so that you are looking at the medulla. You should be able to see thick and thin parts of loops of Henle, as well as collecting ducts and capillaries. Search the slide to find crosssections of these structures and make a drawing to show a representative area with one example of each structure. Identifying these structures in the medulla is difficult. Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 1 Look for the following: thin parts of loops of Henle – thin tubes made of thin cells with nuclei that project into the lumen thick parts of loops of Henle – as above but with thicker cells that are cuboidal in shape collecting ducts – wide tubes with cuboidal or columnar cells forming the lining capillaries – small, thin-walled vessels; it should be possible to see red blood cells inside. 8 Construct a table to show the visible features of the following structures, and their functions: glomerulus Bowman’s capsule proximal convoluted tubule thin loop of Henle thick loop of Henle distal convoluted tubule collecting duct. Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 2 Chapter 15 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 15.1 Measuring human reaction times This is a familiar investigation, but in this form it can be used to illustrate a number of points about experimental design, significance testing and limitations of the method. Reaction times generally improve with practice, although they may get longer again as familiarity sets in. A t-test could be used to compare the mean reaction times from Tables A.1 and B.1. The method is very crude, and it has many limitations. For example, it is not possible to control the positioning of the ruler very precisely, or the experimenter may influence the subject. A possible improvement is to use one of the many free reaction-timing programs available on the internet. Human nerves transmit impulses at speeds between about 10 and 100 m s–1. The value calculated from these experiments will be an underestimate. It does not take into account the delay caused by synapses and the time taken for muscles to contract. Practical 15.2 Investigating the effects of substances on muscle contraction The muscle fibres are best taken from fresh meat. The key thing is to use fine strands, less than 2 mm wide and longer than 10 mm. The laboratory technician or teacher could prepare these before the lesson in which case, they must be kept moist in Ringer’s solution (use a Ringer’s tablet dissolved in the specified volume of distilled water). ATP solution or powder can be obtained from some school suppliers, such as Griffin Education. It is probably best for the teacher to add the ATP to the muscle fibres using a syringe. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 The muscle fibres should show little or no change in length with water or glucose solution, but a marked contraction with ATP. The water is a control, which shows that it is the ATP that causes contraction, rather than the water in which it is dissolved. Glucose does not stimulate contraction, but the muscle cells, even in this in vitro condition, are still stimulated to contract by ATP. The main limitation of the procedure is that some water or glucose may be remaining on the muscle before the ATP is added, so that the contraction could be due to the combined effects of ATP with glucose (and water). The procedure could be improved by treating pieces of muscle separately with just one of the three liquids. The percentage changes should be averaged and compared as before. Practical 15.3 Investigating the effect of auxin on the growth of coleoptiles It is important that the coleoptiles used have not been split by the emerging leaves. The timing of germination of the seedlings needs to be carefully organised. It is best to germinate batches on different days to make sure that some are ready when required. Teachers may wish students to prepare their own logarithmic serial dilutions of auxin. However, this can obscure the main point of the investigation. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 15.1 Measuring human reaction times Safety There are no special safety precautions. Apparatus and materials • metre ruler Introduction In this practical, you will: • measure human reaction times. Reaction time is the interval between the moment a stimulus is applied and the moment when the response starts. Measurement of reaction time can give some indication of the speed at which information is transmitted in the nervous system. Reaction time can be estimated by timing how long it takes for a human subject to catch a falling ruler. The distance the ruler falls, d (in metres) = 12 at2 Equation 15.1 where a = the acceleration due to gravity (9.8 m s–2) and t = time (in seconds). Rearranging this equation, we get: t= d 4.9 Equation 15.2 Using this simple method, you can test two hypotheses: • hypothesis 1: the response time to a stimulus improves (decreases) with practice • hypothesis 2: the response to a sight stimulus is faster than the response to a touch stimulus. Procedure A Reaction time to a sight stimulus 1 Work in pairs: one person is the experimenter and the other the subject. The subject rests his or her dominant arm horizontally on a table, with the hand held over the edge. The experimenter holds the metre ruler vertically so that the 10 cm mark is between the subject’s thumb and fingers, but not touching either. The experimenter must not indicate when he or she will release the ruler. 2 With the subject watching, the experimenter releases the ruler. As soon as the subject sees the ruler falling, he or she tries to catch it between thumb and forefinger. The experimenter records the distance the ruler has fallen, in metres. 3 Repeat steps 1–2 ten times, each time recording the distance the ruler fell. From equation 15.2, calculate the time taken between the stimulus (sight of ruler falling) and response (gripping the ruler), and record your results in a table like the one below. Calculate the mean reaction time and add to the table. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Table A.1 Reaction time to sight stimulus Drop number Distance / m Time / s 1 2 3 4 5 6 7 8 9 10 Mean time: B Reaction time to a touch stimulus 1 The subject closes his or her eyes, and the experimenter places the ruler between the subject’s fingers, lightly touching his or her thumb. 2 The experimenter releases the ruler. As soon as the subject feels the ruler falling, he or she tries to catch it between finger and thumb. The distance the ruler has fallen (in metres) is recorded. 3 Repeat steps 1–2 ten times and record the distance the ruler fell. From equation 15.2, calculate the time between the stimulus (feeling the ruler falling) and response (gripping the ruler), and record your results in a table like the one below. Calculate the mean reaction time and add to the table. Table B.1 Reaction time to touch stimulus Drop number Distance / m Time / s 1 2 3 4 5 6 7 8 9 10 Mean time: Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 C Interpretation of results 4 From the data in Tables A.1 and B.1, address the following points. a Plot a graph of reaction time against drop number. Do the results support hypothesis 1? b Compare the results in Tables A.1 and B.1. Do they support hypothesis 2? The mean times will probably be different, but do you think the difference is significant? Your teacher may be able to suggest a statistical test to help you decide. c Compare your results with the mean values for other members of the class. Are they in agreement? d Suggest limitations of this method, and ways the method might be improved. e D Estimate the distance from the touch receptors in your hand, into the central nervous system and back out to the muscles of the hand. From this distance and the mean time value from Table B.1, calculate the speed of the signal. Is it true to say that this is the speed of the nerve impulses involved? Explain your answer. Using reaction timing programs There are many websites on the Internet that contain simple programs to measure reaction times. Carry out a search for these, select a suitable program and repeat the investigation. Compare your results with the ‘dropping the ruler’ method. Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Practical 15.2 Investigating the effects of substances on muscle contraction Safety ATP is an irritant. Spillages should be washed off immediately using plenty of water. Apparatus and materials • • • • • microscope slide piece of fresh lean meat (e.g. beef) small beaker of 1% glucose solution filter paper 1 cm3 syringe • • • • forceps distilled water 1% ATP solution two Pasteur pipettes Introduction In this practical, you will: • investigate the effect of glucose solution and ATP solution on muscle fibres. Meat is composed mainly of muscle fibres. Procedure 1 Take a clean, dry microscope slide. Remove a fine strand of muscle fibres about 15–30 mm long and 1–2 mm wide from a piece of lean meat. Use forceps to place it on the middle of the slide. Arrange the strand so that it is straight. 2 Add a drop of distilled water to the muscle fibres. Leave the water on the fibres for about two minutes, and then measure the length of the fibres in mm. 3 Drain the excess water from the slide, and use a piece of filter paper to soak up the water from around the muscle tissue. 4 Add a drop of glucose solution to the fibres. Leave for two minutes as before, then measure the length of the fibres again. 5 Remove the glucose solution as you did with the water in step 3. 6 Now add a drop of ATP solution using a syringe (your teacher may wish to do this for you). Leave for two minutes as before, then re-measure the length of the fibres. 7 Calculate the percentage change in length of the muscle fibres: a when the glucose solution was added b when the ATP was added, comparing each with the length in distilled water. 8 Collect the group results for the percentage change in length with glucose and with ATP. Calculate the mean percentage length change with each solution. 9 Address the following points and questions. a What was the effect, if any, of glucose solution and ATP solution on the muscle fibres? Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 b How variable were the class results? You could give a value for the variability, either as the range, or better still by calculating the standard deviation. c Explain the effects, if any, of glucose and ATP solutions on the muscle fibres. d The procedure involved adding solutions one at a time to the same piece of muscle tissue. Why might this method be criticised? Can you suggest a more reliable procedure? Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 15.3 Investigating the effect of auxin on the growth of coleoptiles Safety Take care when using sharps. Wash hands after handling biological material. Apparatus and materials • • • • • • • wheat or oat seeds cotton wool cork mat (or large cork) beaker containing about 30 cm3 of 2% sucrose solution six boiling tubes test-tube rack marker pen • • • • • • two Petri dishes forceps scalpel with new blade access to the following concentrations of auxin in 2% sucrose solution: 100 ppm, 10 ppm, 1 ppm, 0.1 ppm, 0.01 ppm six bungs to fit boiling tubes incubator set at 25 °C Introduction In this practical, you will: • find out the effects of different concentrations of auxin on the lengths of pieces of coleoptile. The shoot that emerges from a cereal seed is covered by a sheath known as a coleoptile. Procedure 1 Soak some wheat or oat seeds in water overnight, and then place them on well-watered cotton wool in a Petri dish (fill the dish with water and pour off the excess). Place about 50–100 seeds in each dish. 2 When they have grown to a length of about 15–20 mm, but before the leaves have broken through the coleoptiles, remove a coleoptile by pulling it from the base of the seedling, using forceps. 3 Place the coleoptile on a cork mat. Cut about 2 mm from the tip, using a sharp scalpel, and discard the tip. As precisely as you can, cut a further 10 mm length of the ‘decapitated’ coleoptile. Place this piece in a beaker of 2% sucrose solution until required. 4 Cut sixty 10 mm lengths of coleoptile, as described in step 3. 5 You are provided with a logarithmic serial dilution of auxin (indoleacetic acid, IAA) in 2% sucrose solution. The concentrations are as follows: 100 ppm (parts per million) 10 ppm 1 ppm 0.1 ppm 0.01 ppm 0 ppm (2% sucrose solution with no auxin, acting as a control). Place 10 cm3 of each auxin dilution into a different boiling tube and label each tube. Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 1 6 Now add 10 lengths of coleoptile from step 4 to each tube. Pick up the coleoptiles gently with forceps to transfer them to the tubes. Make sure that the coleoptiles are in contact with the solution and that they do not stick to the sides of the tube. Place a bung in each tube. 7 Place the tubes in the dark, in an incubator at 25 °C for 2 days. 8 Tip the contents of a tube into a Petri dish. Remove the coleoptiles one by one and measure their length in millimetres. Record your results in a table. 9 For each auxin concentration, calculate the mean increase (or decrease) in length of the coleoptiles. Plot a graph of the mean percentage change in length against the concentration of auxin. Note that the horizontal axis of this graph has a logarithmic scale reading from 0.01 to 100 ppm, with no zero. 10 Draw a horizontal line on the graph at the value of percentage change you have calculated for the control group (the coleoptiles in 2% sucrose solution). Values above this line indicate that growth has been stimulated, below the line indicates an inhibition. 11 Answer the following questions. a Why were the tips of the coleoptiles removed (step 3)? b Which concentration of auxin produced the greatest stimulation to growth of the coleoptiles? c How does auxin act on the coleoptile cells to cause an increase in length? d When pieces of tissue are investigated in test tubes like this, it is called an in vitro experiment. This is Latin for ‘in glass’, as opposed to in vivo experiments, which are carried out on intact organisms. Can you think of any limitations of an in vitro experiment of this kind? Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 2 Chapter 16 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 16.1 Observing the stages of meiosis in the testis of a locust A stock solution of acetic orcein contains 2.2 g of orcein dissolved in 100 ml of glacial ethanoic (acetic) acid, and is corrosive. Dilute 10 ml of this solution with 12 ml of water before use. Wear eye protection and gloves. Carry out the preparation and dilution in a fume cupboard. The diluted solution should be disposed of at the end of the practical. Students should wear gloves when handling acetic orcein stain. Either the desert locust (Schistocerca gregaria) or the African migratory locust (Locusta migratoria) can be used, although the testes are easier to locate in Schistocerca. The specimen should be a young adult or late 5th instar just prior to its final moult. Suppliers of living organisms for use in schools and colleges can supply batches of male locusts (e.g. see Blades Biological Ltd (www.blades-bio.co.uk) who take international orders). The locusts should be killed humanely, by placing them in a killing jar containing ethyl ethanoate (acetate). The insects must not come into direct contact with the chemical (e.g. place them on a perforated zinc platform above the ethyl ethanoate). Students who have ethical objections to the killing of animals for dissection should be excused from taking part in the practical – they can observe the prepared slides. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Activity 16.1 Using models to investigate genetic crosses There are no specific safety issues. Teachers may prefer to use poppit beads instead of paperclips, although large quantities of paperclips are cheaper to obtain than the beads. Any different colours can be used to represent the different alleles. Activity 16.2 The lac operon There are no specific safety issues. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 16.1 Observing the stages of meiosis in the testis of a locust Safety Wear eye protection. Take care when using sharps. Take care when using mains-operated microscopes with water or solutions. Take care when using heating apparatus. Do not inhale the acetic orcein fumes. Wear gloves when handling the stain. Wash hands after handling biological material. Apparatus and materials • • • • • • • • • • microscope cover slips glass rod scalpel (no. 3 handle with new no. 11 blade) cork mat filter paper slide hotplate prepared slide of locust testis squash surgical gloves pins • • • • • • • • slides hand lens fine forceps dissecting scissors acetic orcein stain freshly killed male locust, either a young adult or a 5th instar eyepiece with calibrated graticule eye protection Introduction In this practical, you will: • dissect the testes from a locust • stain testis cells to show the chromosomes, and observe the stages of meiosis. The stages of meiosis can be observed in cells from the testis of a locust in what is known as a testis squash preparation. Procedure 1 You are provided with a freshly killed male locust. Wearing surgical gloves use scissors to cut off the insect’s wings and legs and pin the body to a cork mat, with the dorsal surface upwards. 2 Use the scalpel and scissors to make a longitudinal cut down the length of the abdomen as shown in the diagram on the next page. Open the abdomen to expose the contents, and pin back the flaps of the body wall onto the cork mat. Cambridge International AS and A Level Biology © Cambridge University Press 2013 1 3 Using a hand lens identify the testes. They lie above the gut, over the 5th and 6th abdominal segments. They are surrounded by yellow fat, and are a bunch of sausage-shaped tubules. 4 Separate two or three tubules from the fat and place them on a microscope slide. Gently squash the tubules with a glass rod to spread out their contents. 5 Add a few drops of acetic orcein stain to the tissue, and place a cover slip on top. Place a piece of filter paper on top of the slide and cover slip, and press down gently to spread out the cells. 6 Remove the filter paper and gently tap the cover slip with a blunt instrument such as the end of a scalpel handle. This helps to further flatten the testis cells and spread out the chromosomes. 7 Warm the slide on a hotplate for 30 seconds. This helps to intensify the stain. 8 Locate the testis cells under the low-power objective of the microscope. Use the high-power objective to identify cells undergoing meiosis. If you have difficulty identifying any suitable cells, you can use a prepared slide of a locust testis squash instead. 9 Make drawings of any stages of meiosis that you can see. Label and annotate your drawings (Figure 16.9 on page 370 of the Coursebook). Use a calibrated eyepiece graticule to measure your drawings, and add a scale bar to your drawing. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Chapter 17 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Practical 17.1 Measuring population growth in a culture of Chlorella Ready-prepared culture solution, or a prepared mixture of salts to make the solution, may be purchased from educational suppliers. Alternatively make Sachs’ culture medium, by dissolving the following salts in 1 dm3 of distilled water: • 0.25 g of calcium sulfate CaSO4·2H2O • 0.25 g of calcium phosphate CaH4(PO4)2·2H2O • 0.25 g of magnesium sulfate MgSO4·7H2O • 0.08 g of sodium chloride NaCl • 0.70 g of potassium nitrate KNO3 • 0.005 g of iron(III) chloride FeCl3·6H2O The made-up culture solution is low hazard. If teachers or technicians prepare the culture solution from the solid salts, they should note that solid potassium nitrate is oxidizing and dangerous with some metals and flammable substances. Solid iron(III) chloride is harmful, and irritating to skin. It can cause serious damage to eyes. Some experimentation will be needed to find a suitable dilution of the culture that provides a reasonable starting concentration of cells. Students will need to practise with the haemocytometer to find the grids. The students will need to be organised into a rota in order to take samples each day over the 15-day period It is also possible to measure the cell density in a colorimeter, using a blue filter (wavelength 410 nm) to find the transmission of the cell suspension against a blank of pure culture solution. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Relate the exponential growth phase to Darwin’s observation that populations in ideal conditions can grow very fast, overproducing offspring until the carrying capacity of the environment is reached, due to limiting factors. Other microorganisms can be used, such as the alga Scenedesmus; or yeast cells, which do not need illumination. Practical 17.2 Measuring variation in a plant population The nature of the area to be sampled should be considered in the risk assessment. You should check the school grounds to select suitable species for investigation. A t-test or z-test (for sample sizes >30) can be used to compare the means of two samples. Activity 17.1 A simulation of natural selection Coloured pieces of wool can be used as an alternative to toothpicks. The size of the groups and the sampling area can be adjusted to suit class sizes; between 10 m 10 m and 15 m 15 m is suggested. Selection from other habitats, such as bare soil, can be investigated. With increasing predation, the selective advantage of the green ‘insects’ is reduced. There are very many assumptions and limitations of this simulation. For example, the ‘insects’ don’t move or hide; real birds may have a different way of locating insects, and so on. Activity 17.2 Using a model to test the Hardy–Weinberg principle Teachers may prefer to use Poppit beads instead of paperclips, although paperclips are cheaper. Any two different colours can be used to represent the different alleles. The expected frequencies of genotypes (as in the parental generation) are: AA = p2 = 0.42 = 0.16 Aa = 2pq = (2 × 0.4 × 0.6) = 0.48 aa = q2 = 0.62 = 0.36 So the expected numbers of each genotype are: AA = 0.16 × 50 = 8 Aa = 0.48 × 50 = 24 aa = 0.36 × 50 = 18 Calculation of the χ2 statistic is explained in the Coursebook (pages 386–387). The most likely explanation for a rejected null hypothesis is the small size of the population, or a bias in the choice of gametes (e.g. if the person selecting the paperclips can tell the difference between red and yellow in some way – this would be equivalent to non-random mating). To show the effects of natural selection against the recessive allele (step 12), the students should start by carrying out the steps 1–5 as before. Let’s say that the observed numbers in the next generation were as expected (i.e. 8 × AA, 24 × Aa and 18 × aa). Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 The recessive homozygotes die, so students should now remove 36 yellow paperclips, but increase the numbers to the original population size by adding more paperclips in the ratio of those remaining (i.e. 40 red and 24 yellow). In this case, it would need a total of: 24 40 × 100 = 62 red and × 100 = 38 yellow (to nearest whole numbers). 64 64 The students then repeat the exercise. After a few generations, the selection against the yellow allele will result in a decrease in its frequency in the gene pool. However, it is unlikely to be completely eliminated from the population, being maintained in the heterozygote. This nicely illustrates the effect of selection, which disturbs the Hardy–Weinberg equilibrium. The students could plot a graph of the frequency of allele a (starting at 0.6) against generation. Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Practical 17.1 Measuring population growth in a culture of Chlorella Safety Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • • • microscope haemocytometer slide and coverslip Pasteur pipette 100 cm3 measuring cylinder 250 cm3 conical flask • • • • • cotton wool 10 cm3 syringe fluorescent light bank or Gro-lux tubes actively growing, dense culture of Chlorella culture solution Introduction In this practical, you will: • use a haemocytometer slide to count Chlorella cells • investigate the phases of growth of a pure culture of Chlorella over a period of 15 days. Chlorella is a unicellular freshwater alga which rapidly increases in numbers by asexual reproduction. Procedure A Using a haemocytometer to count cells 1 Look at the haemocytometer. There are different types of these. Most have two small grids etched onto the glass between an H-shaped drainage well (as shown in diagram (a) below) but some have one central grid (as shown in diagram (b) below). Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 2 Select the low-power objective lens of the microscope. Place the haemocytometer on the stage of the microscope and line up one of the grids under the lens, by eye. Now look through the microscope and adjust the focus until you can see a clear image of the grid (this takes practice). The large middle square of the grid measures 1 mm by 1 mm, and consists of 25 medium-sized squares (diagram (a) below). Switch to the high-power objective, and you will see that each medium-sized square is surrounded by triple lines and is further divided into 16 small squares (diagram (b) below). When a cover slip is placed on the haemocytometer, the grids are 0.1 mm below the cover slip. Therefore the volume above each of the 25 medium-sized squares is (0.2 0.2 0.1) mm3 = 0.004 mm3. If some solution containing cells is placed onto a haemocytometer, you can count the cells and work out the number of cells per unit volume. Box P1.2, page 251 in the Coursebook provides additional information 3 Using a measuring cylinder, transfer 100 cm3 of culture solution to a 250 cm3 conical flask. 4 Using a syringe, remove a 10 cm3 sample from an actively growing, dense culture of Chlorella. Add this to the solution in the flask, which will dilute the culture about 100 times. Shake gently to mix the cells and solution. Stopper the flask with cotton wool in between removing samples. 5 Using a Pasteur pipette, add a drop of dilute culture to the haemocytometer, placing the drop above the grids. Place the cover slip on top and allow any excess liquid to run off into the drainage well. 6 Focus on one of the 25 medium-sized squares. Count the number of cells in the square. For cells touching a line, count only those touching the top and right-hand sides of the square, and not those touching the bottom or left-hand sides. Repeat the count for five squares (you can use the other grid too). 7 Calculate the mean number of cells per square. If you now multiply this figure by 250 000 you will get the number of cells in 1 cm3 of the culture solution. B Counting the number of Chlorella cells over 15 days 1 Place the culture flask under a ‘cold’ light source, such as a fluorescent light bank or Gro-lux tubes, and maintain the flask at room temperature. The cells will use the light to carry out photosynthesis, and reproduce asexually. 2 Take a sample of the culture and count the cells once a day, at about the same time every day. Continue taking samples for about 15 days. Problems with sampling at weekends can be overcome Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 by setting up several diluted cultures, with the same initial cell densities, over three days. This will mean that there will be at least one sample for each of the 15 days. 3 Plot a graph of the cell density against time. 4 Describe the shape of the curve on your graph. Does it show any evidence of the Chlorella cells undergoing an exponential growth phase? If a maximum cell density is reached, can you suggest any abiotic factors which may be causing growth and reproduction of the cells to reach a limit? Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Practical 17.2 Measuring variation in a plant population Safety Be aware of any possible dangers or biohazards in the fieldwork site. Discuss the risk assessment with your teacher. Wear gloves if required. Wash hands after handling biological material. Apparatus and materials • ruler • gloves • population of a suitable plant species Introduction In this practical, you will: • measure continuous variation in a population of a plant species and present the results graphically • use the t-test to compare the means of two sets of measurements. Procedure 1 Select a common local plant species that shows variation such as: length of leaves, or leaf area length of stem or flower stalk mass of inflorescence. 2 Plants for measurement should be taken at random from the population rather than by selection as this introduces bias in the sampling. You may be able to use random coordinates to locate the plants to measure (see Practical 18.1) Measure each of the variables in a large number of plants from the population (>40). What is the best precision you can achieve? For example, it will probably not be possible to measure leaf length to a precision of better than ±1 mm. 3 Collate the data in a tally chart, as shown below. Tally of leaves of specific lengths Leaf length/mm Number of leaves 25 | 26 || 27 ||| 28 |||| ||| Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 1 For some variables you may need to combine the categories as shown in the chart below. Note that the categories do not overlap, and the length values reflect the precision of the measurements. Tally of stems in length ranges Stem length / mm Number of stems 0–4 | 5–9 10–14 15–19 4 |||| |||| || Plot a frequency histogram of the number of leaves (or other variables) against length categories. Your histograms should look something like the diagram below. Does each of your measured variables show a normal (bell-shaped) distribution? 5 Select two populations of plants of the same species, living in different habitats. From your observations of the populations, identify a variable by which they may differ. For example, you might suspect that a population of plants living in a shady habitat has smaller leaves than a population growing in an open field where there is more light. 6 Measure a sample of 15 randomly selected leaves from each population of plants. 7 Carry out a t-test to establish the significance of the difference in the mean leaf length of the two populations. Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 2 Chapter 18 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. The nature of the areas to be sampled should be considered in the risk assessments. Practical 18.1 Investigating the distribution of plants in two habitats, using random sampling You should visit the field sites to identify suitable species to record and to select two areas for comparison. Keys or identification sheets should be prepared that show all the common plant species found in the area. A simple identification sheet can be made by photocopying leaves of the common species. The names can then be written onto the photocopy paper, and the sheets laminated. The Braun–Blanquet scale is a relatively simple abundance scale with a few large categories. It is particularly suitable for use in species-rich communities. Practical 18.2 Sampling animals from a terrestrial habitat You should visit the field sites to select areas suitable for sampling. Keys or identification sheets should be obtained that show all the invertebrates likely to be found in the habitat. A beating tray can be made by attaching a sheet to a wooden frame about 0.5 m square. Commercially made pooters are available, or they can be easily constructed using a small collecting tube, bung, glass and plastic tubing. Pitfall traps can be made from a plastic cup or glass jar sunk in the ground. A cover is needed to prevent rain collecting in the jar. If a suitable aquatic habitat such as a pond or stream is available, sampling can be carried out using a metal-framed pond net, which is made of a tougher material than a sweep net. Very fine-meshed plankton nets can be used to sample plankton. Students should be encouraged to think about the controls needed when comparing two habitats. The sampling time and area from which the sample is taken must be the same for each habitat. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Practical 18.3 Investigating the distribution of plants along an environmental gradient, using a transect Teachers should identify a suitable field site, such as a trampled path though the school field, or a gradient from dry to marshy ground. Keys or identification sheets should be prepared that show all the common plant species found in the area. A simple identification sheet can be made by photocopying leaves of the common species. The names can then be written onto the photocopy paper, and the sheets laminated. The Field Studies Council also publishes identification charts obtainable from: www.field-studies-council.org/publications/fold-out-charts.aspx Students could extend the investigation by measuring factors which might affect the plant distribution, such as the degree of soil compaction, or the soil water content. Compaction can be measured using a penetrometer – a simple instrument that measures the depth a spike is driven into the ground by a standard force. The percentage water content can be measured by heating a known mass of soil in an oven at 100 °C until the weight remains constant. A point quadrat is easier to use than a frame (area) quadrat, avoiding subjective estimations of percentage cover, or difficulties in counting numbers of plants in a field. However, the exercise could be carried out with a frame quadrat if required. The distribution of each species across the transect can be plotted as a histogram (Figure PG18.1). Figure 18.1 Histogram showing the distribution of a species across a transect. The histograms should be arranged one above the other for comparisons between species. Alternatively, the distributions can be plotted as kite diagrams. These are normally used for rocky shore transects, although there is no reason why they can’t be used for other habitats. The counts of ‘hits’ on the y-axis should be an ordinal variable; for example, an abundance scale of ranks, such as an ACFOR scale (abundant, common, frequent, occasional, rare). Figure PG18.2 on the next page shows how to plot a kite diagram. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Figure 18.2 Kite diagram showing the distribution of a species across a transect. Practical 18.4 Measuring the diversity of broad-leaved plant species in two habitats, using Simpson’s Index of Diversity You should visit the field sites to select two areas for comparison. Keys or identification sheets should be prepared that show all the common plant species found in the area. A simple identification sheet can be made by photocopying leaves of the common species. The names can then be written onto the photocopy paper, and the sheets laminated. Practical 18.5 Observing single-celled organisms Students should wash their hands after handling cultures. For drawing, Paramecium can be slowed down by using viscous solutions such as Protoslow available from Blades Biological (www.blades-bio.co.uk/). Some species of Chlorella are free-living; others exist symbiotically inside other protoctists such as Paramecium. Practical 18.6 Using mark–release–recapture to estimate the size of a population of snails Students must wash their hands after handling biological material. The nature of the area to be sampled should be considered in the risk assessment. The habitat must be well defined. Check the school or college grounds to select a suitable species for investigation. Snails are a good species to use because they are easy to mark on the shells, and they are likely to remain within the habitat. Other species such as woodlice can be used. The ratio of the number of individuals caught and marked in the first sample (S1) to the total number in the population (N) is equal to the ratio of the number marked and recaptured (R) to the total caught in the second sample (S2). S1 R = N S2 Cambridge International AS and A Level Biology © Cambridge University Press 2014 3 Rearranging the equation gives: N= S1 ´ S2 R The data supplied in step 7 gives (to nearest whole number): N= 63´ 78 = 328 15 The snails should be collected at the same time of day in each sample, because they may change their pattern of distribution at different times. For example, they may feed on leaves at night and hide under stones during the day. Sampling at different times may bias the results. The method will not give reliable results in a poorly defined habitat, or where there is a degree of immigration or emigration, since the population size will vary. The marking technique must not harm the snails and they must not be made more conspicuous to predators, which will reduce the size of the population. The technique should not alter the habitat, which could also lead to a decrease in the population. Cambridge International AS and A Level Biology © Cambridge University Press 2014 4 Practical 18.1 Investigating the distribution of plants in two habitats, using random sampling Safety Be aware of any possible dangers or biohazards in the fieldwork site. Discuss the risk assessment with your teacher. Wear gloves if required. Wash hands after handling biological material. Apparatus and materials • • • two 10 m measuring tapes (or string with knots at 1 m intervals) four strong pegs (if using string) 0.5 m × 0.5 m (0.25 m2) frame quadrat • • random number table (or calculator with random number function) plant keys or identification sheets Introduction In this practical, you will: • investigate the abundance of plant species in two habitats using a random sampling technique. In a relatively uniform habitat such as a school field, the method of random sampling can be used to investigate the abundance of plant species present. Quadrats are placed randomly in the area to be sampled, using random numbers to generate coordinates. Note that throwing quadrats is not random. Procedure 1 Mark out an area of ground 10 m × 10 m in the chosen habitat, using measuring tapes or string. 2 Use a random number table or a calculator with a random number function to generate a pair of random numbers (from 0 to 9) to supply the coordinates for placing the first quadrat. 3 Locate the coordinates along the tapes and place the bottom left corner of the quadrat at the intersection of the coordinates. 4 Count the number of different species of plants within the quadrat. It helps if you can identify the species, using a plant key or identification sheets. If there are difficulties with identification, just call them species A, species B, and so on. There is no need to count the total numbers of each species. 5 Now select a common plant species. Let’s call the species that you have selected, species A. 6 Record the total numbers of individual plants of species A within the quadrat. 7 Estimate the percentage cover of species A within the quadrat, and convert the percentage to the Braun–Blanquet scale using the table on the next page. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 Percentage cover and the Braun–Blanquet scale % cover 8 Braun–Blanquet scale <1 1 1–5 2 6–25 3 26–50 4 51–75 5 76–100 6 Repeat steps 2–7 another 9 times, and record your results in a table like the one below. Record of results Quadrat No. of species in quadrat Presence / absence No. of individuals of species A of species A Cover on the Braun– Blanquet scale 1 2 3 4 5 6 7 8 9 10 9 Repeat the sampling in a different area. Try to select areas with visible differences in vegetation. 10 For each habitat, calculate the mean species richness (average number of species per quadrat). 11 For species A, calculate the species frequency, the mean species density and the mean cover on the Braun–Blanquet scale in each habitat, using the following equations: Species frequency = % of quadrats in which the species was found Mean species density (per quadrat) = sum of number of individuals in quadrats number of quadrats Mean cover on the Braun–Blanquet scale = 12 a cover per quadrat number of quadrats Compare the differences in plant distribution in the two habitats. Can you think of any reasons why the two areas might have different plant communities? b What are the limitations of random sampling to measure the distribution of plants in the two habitats? c What are the limitations of the different methods used to measure the distribution of species A? Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 18.2 Sampling animals from a terrestrial habitat Safety Be aware of any possible dangers or biohazards in the fieldwork site. Discuss the risk assessment with your teacher. Wear gloves if required. Wash hands after handling biological material. Apparatus and materials • • • • • • beating trays pooters pitfall traps hand lenses keys or identification guides small (artist’s) paintbrushes • • • • • trowels trays sweep nets collecting jars gloves Introduction In this practical, you will: • use different pieces of apparatus to collect small invertebrates from a terrestrial habitat • plan investigations using the apparatus. Small terrestrial invertebrates can be sampled using various simple pieces of collecting equipment (as shown in the diagram below). Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 A beating tray is a large sheet supported by a frame. It is held underneath a bush or tree branch, which is then shaken vigorously to dislodge organisms onto the sheet. The organisms are transferred to a tray, where they can be collected and identified. A pooter is used to suck small invertebrates into a collecting tube. Sweep nets are passed back and forth through long grass to collect insects or other similar organisms. A pitfall trap is a plastic cup or jar sunk into the ground to trap animals walking over it. Take care not to harm the animals when handling them – an artist’s paintbrush is useful for this. Return the organisms to their habitat after you have identified them. Procedure A Using collecting equipment 1 Select a suitable terrestrial habitat from which to collect small invertebrates such as insects, for example a field, hedge or tree. 2 Use the beating tray to collect small invertebrates from a hedge or tree branch. Collect the organisms in specimen jars or using a pooter. Use keys or identification guides to identify the animals you have caught. 3 Set up pitfall traps in a suitable spot, such as the edge of a field. The traps should have a cover to keep out rain. Leave them for 24 hours before emptying their contents into trays and identifying the animals. 4 Use a sweep net in a suitable habitat, such as long grass. Carefully remove any insects or other invertebrates that you catch. Transfer the organisms to collecting jars and identify them. B Planning investigations Plan investigations to test the hypotheses below. In your plan, state how any comparisons between two habitats will be controlled – how will you ensure that sampling is fair and unbiased? If possible, carry out the investigations. Hypotheses 1 The invertebrate community living on one species of bush or tree is different from the community living on another species of bush or tree. 2 Invertebrates living on the ground in a field are more active at night than during the day. 3 The invertebrate community living in a field of long grass is different from the community living in a field of crop plants. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 18.3 Investigating the distribution of plants along an environmental gradient, using a transect Safety Be aware of any possible dangers or biohazards in the fieldwork site. Discuss the risk assessment with your teacher. Wear gloves if required. Wash hands after handling biological material. Apparatus and materials • • • 20 m measuring tape (or length suitable for area of study) point quadrat plant keys or identification sheets Introduction In this practical, you will: • use point quadrats to sample plant species across a terrestrial area. A transect is a systematic sampling method, used to study the distribution of organisms across an environmental gradient, where there is a change from one habitat to another. An example of an environmental gradient is the change from a fully terrestrial habitat, such as a field, to an aquatic one, such as a pond. Here the habitat gradually changes, passing through an intermediate marshy area. Another example is across a path, where the habitat changes from grass to a trampled area and back to grass again. A very clear environmental gradient is seen on a rocky seashore, where the environment changes from marine at the bottom of the shore, to terrestrial at the top. In between these two extremes, the rocky shore organisms live in habitats with different degrees of immersion. Procedure 1 Select a suitable area for investigation, and place the measuring tape across the area. 2 Insert the point quadrat in the ground at the start of the tape, at right angles to the tape. 3 Drop a pin through the first hole in the point quadrat. Record any plant species that the pin touches, using a suitable table. For each pin drop, record only one hit per species, regardless of the number of times a pin touches that species. 4 Place the pin in the second hole and repeat step 3. Repeat this procedure until all ten holes have been used. For each species, you will have a maximum of ten hits. 5 Move the quadrat further along the tape, to the next sampling station. (The distance will depend on the size of the sampling area to be investigated.) 6 Repeat steps 2 to 5 at regular intervals along the tape. 7 Combine your results with those of other groups, in order to obtain a bigger sample size. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 8 Present the combined results graphically, to show the distribution of representative species across the transect. You can do this as series of histograms, or as kite diagrams. Your teacher will help. 9 Address the following points and questions. a Describe any change in the plant community along the environmental gradient. b Can you explain any trends that are apparent? What biotic or abiotic factors might be important in affecting the distribution of plants across the transect? (See Figure 18.11 and pages 431–434 in the Coursebook.) c What are the advantages and disadvantages of using a point quadrat, rather than an area (frame) quadrat, when carrying out a transect? d What are the limitations of an ecological investigation of this kind? How could you improve the reliability of your sampling? e If time is available, you could measure one of the factors you have identified in b to find out if there is a correlation between the factor and the distribution of plant species. Correlations can be tested statistically, using the Spearman rank correlation coefficient (consult your teacher). Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 18.4 Measuring the diversity of broad-leaved plant species in two habitats, using Simpson’s Index of Diversity Safety Be aware of any possible dangers or biohazards in the fieldwork site. Discuss the risk assessment with your teacher. Wear gloves if required. Wash hands after handling biological material. Apparatus and materials • • • two 10 m measuring tapes (or string with knots at 1 m intervals) stout pegs (if using string) 0.5 m × 0.5 m (0.25 m2) frame quadrat • • random number table (or calculator with random number function) plant keys or identification sheets Introduction In this practical, you will: • investigate the diversity of broad-leaved species in two habitats, using the random sampling method described in Practical 18.1. The diversity of plant species in a habitat can be measured using Simpson’s Index of Diversity. The index requires the total numbers of each species of plant to be counted. Procedure 1 Mark out an area of ground 10 m × 10 m in the chosen habitat, using measuring tapes or string. 2 Use a random number table or a calculator with a random number function to generate a pair of random numbers (from 0 to 9) to supply the coordinates for placing the first quadrat. 3 Locate the coordinates along the tapes and place the bottom left corner of the quadrat at the intersection of the coordinates. 4 Identify the different species of broad-leaved plants within the quadrat, using a plant key or identification sheets. If there are difficulties with identification, just call them species A, species B etc. Count the numbers of each species and record your results in a suitable table. 5 Repeat the sampling in a different area, such as a different part of the school field. Try to select areas with visible differences in vegetation. 6 For each habitat, calculate Simpson’s Index of Diversity (D) from the following formula: D=1– n N 2 where N = the total number of broad-leaved plants of all species, and n = the total number of broad-leaved plants of one particular species. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 n , square this number, and then sum (Σ) all the squares. N Values of D range from 0 to 1, where 0 represents a low diversity, and 1 a high diversity. For each species, calculate 7 Which habitat has the higher species diversity? 8 Can you think of any reasons why the two habitats might have a different diversity? Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 18.5 Observing single-celled organisms Safety Take care when using mains-operated microscopes with water or solutions. Wash hands after handling biological material. Apparatus and materials • • • • • • dropping pipettes microscope hand lens slides cavity slides cover slips • • • • • calibrated eyepiece graticule live culture of Amoeba live culture of Paramecium live culture of Chlorella sample of pond water, or water from an aquarium Introduction In this practical, you will: • observe some species of single-celled organisms that live in freshwater; they are members of the kingdom Protoctista. All protoctists have eukaryotic cells. Some, such as Amoeba and Paramecium, have cells that are similar in structure to cells of animals. These are sometimes called protozoa. Others, such as Chlorella, have plant-like cells. They belong to a large group of protoctists commonly termed algae. Multicellular organisms such as animals and plants are made up of many different kinds of cell, each specialised to perform a particular function. In a single-celled (unicellular) organism, the one cell has to perform all these different functions. Because of this, the cell of a protoctist often has a complex internal organisation. Procedure A Observing Amoeba 1 An amoeba is a very large cell, just visible to the naked eye or through a hand lens. Observe a culture of living Amoeba – they should be just visible as tiny grey specks on the bottom of the culture bottle. Transfer a drop of water containing some cells onto a cavity slide. Place a cover slip onto the slide. 2 Examine the slide using the low-power and high-power objectives and find a large specimen of Amoeba. You may need to observe it for a while before it starts to move. When the Amoeba begins to move, notice the changes in shape as extensions of the cell (pseudopodia) are formed. 3 Note the streaming of the cytoplasm in the direction of formation of the pseudopodia. The inner cytoplasm is more granular, and called endoplasm. The clear, stiffer outer cytoplasm is called ectoplasm. The mechanism by which pseudopodia form is still not fully understood. 4 Note the nucleus, and any food vacuoles in the cytoplasm. These vacuoles contain food particles such as bacteria and small pieces of organic matter that the Amoeba has ingested by phagocytosis. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1 You may also be able to see a contractile vacuole. This organelle fills with water and collapses at intervals, removing water that has entered the cell by osmosis. 5 Make a labelled drawing of an Amoeba. Use a calibrated eyepiece graticule to measure the size of the cell, and add a scale to the drawing. B Observing Paramecium 1 Place a drop of water from a pure culture of Paramecium on a microscope slide. Use forceps to add a few fibres from a paper tissue or cotton wool. This restricts the movements of the Paramecium so that they can be seen more easily. Place a cover slip over the specimen and gently lower it into place. 2 Look at the slide using the low-power and then high-power objectives. Note the Paramecium moving in the water. It moves quickly, using cilia that cover the surface of the cell. These beat in a coordinated way, linked by their basal bodies through a network of protein filaments and microtubules. What happens when the Paramecium hits an obstacle? 3 Observe the nucleus, and the stiff outer covering of the cell, called the pellicle. You may be able to see the oral groove, where food particles are swept by the beating cilia into the ‘gullet’. If the organism keeps still for long enough, you may be able to see the two contractile vacuoles filling and emptying as they remove water from the cell. 4 Make a labelled drawing of a Paramecium. Use a calibrated eyepiece graticule to measure the size of the cell, and add a scale to the drawing. C Observing Chlorella 1 Mount a drop of water from a pure culture of Chlorella on a microscope slide. 2 Look at the slide using the low-power and high-power objectives. This unicellular alga consists of very small cells packed full of chloroplasts. Some single cells will be visible; others will be in groups of three or four. 3 Make a labelled drawing of a few Chlorella cells. Use a calibrated eyepiece graticule to measure the size of the cell, and add a scale to the drawing. D Observing single-celled organisms in pond water 1 Mount a drop of pond water on a microscope slide. 2 Look at the slide using the low-power and high-power objectives and see if you can find any other unicellular organisms. Algal cells like Chlorella should be easy to identify from their green chloroplasts. You may see Paramecium or other ciliates, or Amoeba. Some motile species use flagella for movement, rather than cilia. A flagellum has a similar structure to a cilium, but is much longer. There are often many cilia covering the surface of the cell, but there will be only one or two flagella. Cambridge International AS and A Level Biology © Cambridge University Press 2014 2 Practical 18.6 Using mark–release–recapture to estimate the size of a population of snails Safety Be aware of any possible dangers or biohazards in the fieldwork site. Discuss the risk assessment with your teacher. Wear gloves if required. Wash hands after handling biological material. Apparatus and materials • non-toxic waterproof paint or nail varnish • small paintbrush • bucket Introduction In this practical, you will: • use the mark–release–recapture method to estimate the size of a population of terrestrial snails. The mark–release–recapture method can be used to estimate the total population of a mobile animal living in a well-defined area. A sample of the population is caught and marked in a non-harmful way. The animals are then released back into their habitat and left to mix with the rest of the population. After a suitable period of time, a second sample is taken and the numbers of marked and unmarked individuals is counted. The proportion of marked individuals in the second sample is used to estimate the size of the total population. Procedure 1 Select a terrestrial habitat containing a sizeable population of an identifiable species of snail. The habitat must be a well-defined one, such as a small walled garden. 2 Collect as many snails as possible from the habitat. Mark each snail with a small spot of non-toxic waterproof paint or nail varnish applied to the shell. Keep the snails in a bucket until the paint has dried. 3 Count the marked snails and return them to their habitat. Replace them evenly throughout the area. 4 After 3 days, collect a second sample of snails from the habitat. You should collect them at the same time of day as you collected the first sample. 5 Record the number of marked and unmarked snails in the second sample. 6 Calculate the total population of snails from the formula: Estimated population size = number in first sample × total number in second sample number of marked individuals in second sample Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 1 7 A student carried out this investigation. The results were: number of snails in first sample = 63 number of snails in second sample = 78 number of marked snails in second sample = 15 Calculate the population size from these data. 8 Why should both samples be collected at the same time of day? Hint: think about the feeding habits of the snails. 9 Why is this method only suitable for a species living in a well-defined habitat? 10 Explain the importance of the following limitations of the sampling method: a the marking technique must not harm the snails or make them more easily seen b the capture technique must not alter the habitat c there must be no immigration or emigration of snails from the habitat. Cam brid ge International AS and A Level Biology © Cam brid ge University Press 2014 2 Chapter 19 Practical guidance These practicals are included to give ideas for activities to support teaching of the Cambridge International AS and A Level Biology syllabus. The practicals chosen relate closely to the learning outcomes, and may be used to develop students’ practical skills in preparation for practical assessment. However, they are not intended to form a complete practical course. Safety Although great care has been taken in checking the accuracy of the information provided, Cambridge University Press shall not be responsible for any errors, omissions or inaccuracies. Teachers and technicians should always follow their school and departmental safety policies. You must ensure that you consult your employer’s model risk assessments and modify them as appropriate to meet local circumstances before starting any practical work. Risk assessments will depend on your own skills and experience, and the facilities available to you. Everyone has a responsibility for his or her own safety and for the safety of others. The practicals should be carried out by teachers themselves before they are presented to students. Additional notes relating to each activity in this chapter are given below, but should not be regarded as risk assessments. Activity 19.1 Investigating the primary structure of ribonuclease Students will require internet access to get the most out of this activity; however, the Coursebook acts as a useful reference and other reference books may assist. This activity contains two sections, the first containing a number of worksheet-style questions and the second making use of an online resource to investigate amino acid sequences. Cambridge International AS and A Level Biology © Cambridge University Press 2014 1