▪ Illustrate the structure of RNA and DNA using simple labelled diagrams; ▪ Draw a nucleotide using shapes; recognise (not draw) the structural formulae of nucleotides, ribose, deoxyribose, pyrimidines, purines; nature of hydrogen bonds. 2 ▪ What are nucleic acids? ▪ What does DNA stand for? ▪ What does RNA stand for? ▪ What are nucleic acids made up of? ▪ Using a diagram, describe the structure of nucleotides. ▪ How are dinucleotides and polynucleotides formed? ▪ Name the five nitrogenous bases. Which are purines and pyrimidines? ▪ How does the structure of purines differ to those of pyrimidines? ▪ Which nitrogenous base is not found in RNA? ▪ Which nitrogenous base is not found in DNA? 3 ▪ Nucleic acids are perhaps the most important molecules in biology. They contain the genetic material (instructions) of every single living organism on the planet, even the simplest virus. NUCLEIC ACIDS ▪ DNA and RNA are nucleic acids. DNA stands for deoxyribonucleic acid and RNA for ribonucleic acid. They are polynucleotides: polymers made from monomers called nucleotides. 4 Nucleotides have three parts to them: ▪ A phosphate group, which is negatively charged. ▪ A pentose sugar, which has 5 carbon atoms in it. In RNA the sugar is ribose. In DNA the sugar is deoxyribose. ▪ A nitrogenous base. There are five different bases. Adenine (A), Guanine (G), Thymine (T), Cytosine (C), and Uracil (U). The base thymine is found in DNA only and the base uracil is found in RNA only. 5 6 7 8 9 ▪ Nucleotides polymerise by forming phosphodiester bonds between the 3’ carbon of the pentose sugar of one nucleotide and an oxygen atom of the phosphate group of another nucleotide via a condensation reaction. NUCLEOTIDE POLYMERISATION ▪ The bases do not take part in the polymerisation, so the chain is held together by a sugar-phosphate backbone with the bases extending off it. This means that the nucleotides can join together in any order along the chain. Many (up to several million) nucleotides form a polynucleotide. ▪ A polynucleotide has a free phosphate group at one end and a free OH group at the other end. 10 11 12 ▪ What are nucleic acids? ▪ What does DNA stand for? ▪ What does RNA stand for? ▪ What are nucleic acids made up of? ▪ Using a diagram, describe the structure of nucleotides. ▪ How are dinucleotides and polynucleotides formed? ▪ Name the five nitrogenous bases. Which are purines and pyrimidines? ▪ How does the structure of purines differ to those of pyrimidines? ▪ Which nitrogenous base is not found in RNA? ▪ Which nitrogenous base is not found in DNA? 13 ▪ What are the main features of the 3-dimensional structure of DNA? ▪ What type of bonds are formed between the bases in DNA? ▪ How many hydrogen bonds are formed between AT, AU and GC? ▪ How many base pairs are there in on complete turn on the DNA spiral? ▪ What is the distance between each base pair sequence along the spiral in DNA? ▪ How is RNA different to DNA? ▪ What are the different types of RNA? ▪ What are the functions of DNA? 14 The main features of the 3-dimensional structure of DNA are: ▪ DNA is double-stranded, so there are two polynucleotide strands (chains) alongside each other. ▪ The polynucleotide chains run in opposite directions to each other and are therefore antiparallel ▪ Each of the two strands form a right-handed helical spiral and are wound around each other to form a double helix. 15 ▪ The two strands are joined together by hydrogen bonds between the bases. The bases therefore form base pairs, which are like rungs of a ladder. ▪ The base pairs are specific. A only binds to T (and T with A), and C only binds to G (and G with C). These are called complementary base pairs. This means that whatever the sequence of bases along one strand, the sequence of bases on the other strand must be complementary to it. ▪ The base pairs can occur in any other, i.e. there is no restriction to their sequence 16 ▪ The width between the two sugar-phosphate backbones is constant and to the width of a base pair. ▪ Along the chain, base pairs are 0.34 nm apart. ▪ A complete turn of the double helix is 3.4 nm and consists of 10 base pairs. 17 18 ▪ …… (hydrogen bond) 19 20 21 22 23 RNA is different to DNA in that: THE STRUCTURE OF RNA ▪ RNA has the sugar ribose instead of deoxyribose ▪ RNA has the base uracil instead of thymine ▪ RNA is usually single stranded ▪ RNA is usually shorter than DNA 24 25 Messenger RNA (mRNA) ▪ Formed in the nucleus ▪ Has a single chain twisted into a helix whose length and base sequence vary ▪ Has a short life ▪ Is involved in protein synthesis ▪ An mRNA molecule carries a portion of the DNA code to other parts of the cell for processing ▪ mRNA is created during transcription. 26 Transfer RNA (tRNA) • • • • tRNA matches amino acids to their codon tRNA is only about 80 nucleotides long, and it folds up by complementary base pairing to form a clover-leaf structure. At one end of the molecule there is an amino acid binding site On the middle loop there is a triplet nucleotide sequence called the anticodon. 27 ▪ Ribosomal RNA (rRNA) ▪ Made in the nucleolus and forms over half the mass of ribosomes 28 ▪ DNA is the genetic material, and genes are made of DNA. DNA therefore has two essential functions: replication and expression. ▪ Replication means that the DNA, with all its genes, must be copied every time a cell divides. ▪ Expression means that the genes on DNA must control characteristics. A gene is a section of DNA that codes for a particular protein. Characteristics are controlled by genes through the proteins they code for, like this: Sequences of bases in DNA Shape & determines Sequence of determines determines function of amino acids in protein polypeptides (eg. enzme) Characteristics of cell 29 ▪ Expression can be split into 2 parts ▪ Transcription: ▪ Making RNA ▪ Translation ▪ Making proteins 30 ▪ The sum total of all the genes in an organism is called the genome ▪ Genes only seem to comprise about 2% of the DNA in a cell ▪ The majority of the DNA does not form genes ▪ Some of this ‘junk DNA’ is used to produce non-coding RNA components ▪ The rest doesn’t seem to do anything…(or so we think) 31 ▪ Codon ▪ a sequence of three nucleotides that together form a unit of genetic code in a DNA or RNA molecule ▪ Anticodon ▪ a sequence of three nucleotides forming a unit of genetic code in a transfer RNA molecule, corresponding to a complementary codon in messenger RNA 32 33 34 35 36 37 38 ▪ If a sample of DNA had 18% of guanine nucleotides, what percentage of its nucleotides would be thymine? ▪ List 2 similarities between DNA and RNA. 39 40 41 42 ▪ What are the main features of the 3-dimensional structure of DNA? ▪ What type of bonds are formed between the bases in DNA? ▪ How many hydrogen bonds are formed between AT, AU and GC? ▪ How many base pairs are there in on complete turn on the DNA spiral? ▪ What is the distance between each base pair sequence along the spiral in DNA? ▪ How is RNA different to DNA? ▪ What are the different types of RNA? ▪ What are the functions of DNA? 43