QUESTIONS: REVISION CHAPTER 1: BIOLOGICAL MOLECULES Question 1: Describe the role of carbohydrates in living organisms. Answer: Carbohydrates play several important roles in living organisms, including serving as a source of energy, structural support, and signalling molecules. Glucose is the primary source of energy for most cells, and is stored in the form of glycogen in animals and starch in plants. Carbohydrates also play a key role in the structure of cell walls, and some carbohydrates, such as glycoproteins, are involved in cell signalling. Question 2: Explain the difference between saturated and unsaturated fatty acids, and discuss the health implications of each. Answer: Saturated fatty acids have no double bonds between carbon atoms, whereas unsaturated fatty acids have one or more double bonds. Saturated fats are typically solid at room temperature, while unsaturated fats are typically liquid. A diet high in saturated fat has been linked to increased risk of heart disease, while a diet high in unsaturated fat may help lower cholesterol levels and reduce the risk of heart disease. Question 3: Compare and contrast the structures of DNA and RNA. Answer: Both DNA and RNA are nucleic acids composed of nucleotides. DNA is a double-stranded helix, while RNA is typically single-stranded. DNA contains the bases adenine, guanine, cytosine, and thymine, while RNA contains uracil instead of thymine. DNA is responsible for the storage and transmission of genetic information, while RNA plays a key role in protein synthesis. Question 4: Explain the difference between an alpha helix and a beta pleated sheet in protein structure. Answer: An alpha helix is a secondary structure of a protein in which the amino acid chain coils into a helix shape. The structure is stabilised by hydrogen bonds between the amino acid backbone. A beta pleated sheet is another type of secondary structure in which the amino acid chain folds back and forth, forming a sheet-like structure. The structure is stabilised by hydrogen bonds between adjacent amino acid chains. While both structures are formed by hydrogen bonding, they differ in the direction of the bonds and the resulting shape of the protein. Question 5: Describe the function of enzymes in biochemical reactions, and explain how the structure of an enzyme is related to its function. Answer: Enzymes are biological catalysts that increase the rate of biochemical reactions by lowering the activation energy required for the reaction to occur. Enzymes are specific to the substrates they act upon, and typically work by binding to the substrate to form an enzyme-substrate complex. The structure of an enzyme is critical to its function, as the shape of the enzyme's active site must be complementary to the shape of the substrate. Additionally, the catalytic activity of an enzyme is often influenced by the presence of cofactors or the regulation of enzyme expression. Question 6: Discuss the structural and functional differences between globular and fibrous proteins. Answer: Globular proteins are typically rounded or globular in shape and are soluble in water, whereas fibrous proteins are long and thin and are typically insoluble in water. Globular proteins often have a tertiary or quaternary structure and are involved in functions such as enzymes, transport, and regulation. Fibrous proteins, on the other hand, often have a primary or secondary structure and are involved in functions such as support, protection, and movement. Examples of globular proteins include haemoglobin and enzymes, while examples of fibrous proteins include collagen and keratin. The differences in structure and function between globular and fibrous proteins reflect the diverse roles that proteins play in living organisms. CHAPTER 2: Cells and Cell structure Question 1: Describe the structure and function of the plasma membrane in eukaryotic cells. Answer: The plasma membrane is a thin, flexible layer that surrounds the cell and separates the interior of the cell from its environment. It is composed of a phospholipid bilayer, which has hydrophilic heads that face outward and hydrophobic tails that face inward. The membrane also contains proteins, which can act as channels, receptors, and enzymes. The function of the plasma membrane is to regulate the movement of molecules in and out of the cell and to maintain the cell's internal environment. Question 2: Compare and contrast the cell wall in plant cells and bacterial cells. Answer: The cell wall in plant cells is composed of cellulose and is located outside the plasma membrane. It provides support and protection for the cell, as well as contributing to the structure of tissues and organs. In bacterial cells, the cell wall is composed of peptidoglycan and is also located outside the plasma membrane. It provides support and protection for the cell, and is an important target for antibiotics. Question 3: Describe the structure and function of the nucleus in eukaryotic cells. Answer: The nucleus is a membrane-bound organelle that contains the genetic material of the cell in the form of chromosomes. It is composed of a double membrane called the nuclear envelope, which has pores that allow the passage of molecules in and out of the nucleus. The nucleus also contains a nucleolus, which is responsible for the production of ribosomes. The function of the nucleus is to regulate gene expression and control the activities of the cell. Question 4: Explain the process of protein synthesis in eukaryotic cells, including the role of ribosomes, rough endoplasmic reticulum, and Golgi apparatus. Answer: Protein synthesis begins in the nucleus, where DNA is transcribed into messenger RNA (mRNA). The mRNA then moves to the cytoplasm, where it is translated into protein by ribosomes. Ribosomes can be free in the cytoplasm or attached to the rough endoplasmic reticulum (RER). Proteins synthesised by ribosomes attached to the RER are transported into the lumen of the RER, where they are modified and folded. Vesicles transport the modified proteins to the Golgi apparatus, where they are further modified, sorted, and packaged for delivery to their final destination. Question 5: Compare and contrast the structure and function of mitochondria and chloroplasts in eukaryotic cells. Answer: Both mitochondria and chloroplasts are membrane-bound organelles that produce energy in eukaryotic cells. Mitochondria produce ATP through aerobic respiration, while chloroplasts produce ATP through photosynthesis. The structure of mitochondria includes an outer membrane, an inner membrane with cristae, and a matrix. The structure of chloroplasts includes a double membrane, thylakoid membranes, and stroma. Chloroplasts also contain chlorophyll, which is responsible for capturing light energy for photosynthesis. Question 6: Describe the structure and function of lysosomes in eukaryotic cells. Answer: Lysosomes are membrane-bound organelles that contain hydrolytic enzymes. They are responsible for the breakdown of macromolecules, such as proteins, carbohydrates, and lipids, as well as the degradation of old organelles and foreign substances. Lysosomes are formed by the Golgi apparatus and are found in most animal cells. Question 7: Compare and contrast the structures and functions of optical microscopes and electron microscopes. Answer: Optical microscopes use visible light to magnify specimens and can produce images with a resolution of about 0.2 micrometres. They are useful for studying living cells and tissues, but have limited magnification and resolution. Electron microscopes use a beam of electrons instead of visible light to magnify specimens and can produce images with a resolution of up to 0.2 nanometers. They have higher magnification and resolution than optical microscopes, but require the specimens to be fixed and coated with heavy metals, and cannot be used to observe living specimens. There are two types of electron microscopes: transmission electron microscopes (TEMs) and scanning electron microscopes (SEMs). TEMs use electrons transmitted through the specimen to produce an image, while SEMs use electrons scattered from the surface of the specimen to produce an image. Question 8: Compare and contrast the structure and function of prokaryotic and eukaryotic cells. Answer: Prokaryotic cells are smaller and simpler in structure than eukaryotic cells. They lack a nucleus and membrane-bound organelles, and their DNA is circular and located in the nucleoid region of the cell. Prokaryotic cells have a cell wall, which provides support and protection for the cell, and may also have pili and flagella for movement. Eukaryotic cells are larger and more complex in structure than prokaryotic cells. They have a nucleus and various membrane-bound organelles, including mitochondria, chloroplasts, endoplasmic reticulum, Golgi apparatus, lysosomes, and vacuoles. Eukaryotic cells have a cytoskeleton, which provides structural support and is involved in cell movement and division. Both prokaryotic and eukaryotic cells carry out essential functions such as metabolism, growth, and reproduction, but they differ in their modes of organisation and complexity. CHAPTER 3: Enzymes Question 1: Describe the general structure and mechanism of action of enzymes. Answer: Enzymes are proteins that act as biological catalysts, speeding up chemical reactions in cells. They have a specific three-dimensional structure, with a pocket or cleft called the active site where the substrate binds. Enzymes lower the activation energy required for a chemical reaction to occur, by orienting the substrate molecules and facilitating the formation of the transition state. Enzymes themselves are not consumed or changed by the reaction, and can be used repeatedly. Question 2: Explain how enzyme activity is affected by changes in temperature and pH. Answer: Enzyme activity is highly dependent on the temperature and pH of the environment. At low temperatures, enzyme activity is slow because the kinetic energy of the molecules is low. At high temperatures, enzyme activity may denature or irreversibly change the structure of the protein, preventing it from functioning. Each enzyme has an optimal temperature range, at which it is most active. Similarly, enzymes have an optimal pH range at which they function best. Changes in pH can alter the charge or shape of the enzyme, affecting its ability to bind to the substrate. Question 3: Describe the effects of substrate concentration on enzyme activity. Answer: Enzyme activity increases with increasing substrate concentration, until a point is reached where all the active sites are occupied and the rate of reaction plateaus. This point is called the maximum velocity or Vmax of the reaction. At low substrate concentrations, the rate of reaction is proportional to the substrate concentration and follows first-order kinetics. At higher substrate concentrations, the rate of reaction becomes saturated and follows zero-order kinetics. Question 4: Explain how enzyme inhibitors can affect enzyme activity. Answer: Enzyme inhibitors are molecules that bind to the enzyme and reduce its activity. There are two main types of enzyme inhibitors: competitive inhibitors and noncompetitive inhibitors. Competitive inhibitors bind to the active site of the enzyme, blocking the substrate from binding. Noncompetitive inhibitors bind to other parts of the enzyme, changing the shape or charge of the protein and reducing its activity. Some enzyme inhibitors are naturally occurring molecules, such as toxins or poisons, while others are used as drugs to treat diseases. Question 5: Discuss the importance of enzyme regulation in cell metabolism. Answer: Enzyme regulation is critical for maintaining the balance and efficiency of metabolic pathways in cells. Enzymes can be regulated at various levels, including gene expression, post-translational modification, and allosteric regulation. By controlling the activity of specific enzymes, cells can adjust their metabolic rates in response to changing environmental conditions or internal signals. Enzyme regulation also allows cells to avoid the wasteful or harmful buildup of metabolic intermediates, and to prioritise the use of certain substrates or pathways over others. Without enzyme regulation, cellular metabolism would be chaotic and inefficient. CHAPTER 4: Transport in and out of the cells CHAPTER 5: Gas exchange Question 1: Describe the structure and function of the plasma membrane in cells. Answer: The plasma membrane is a phospholipid bilayer that surrounds all cells, separating their internal environment from the external environment. The phospholipid bilayer consists of two layers of phospholipid molecules with their hydrophobic tails facing inward and their hydrophilic heads facing outward. Embedded in the membrane are proteins that perform various functions, such as transport of molecules, cell signalling, and cell adhesion. The plasma membrane is selectively permeable, allowing only certain molecules to pass through. 1. Explain how the surface area to volume ratio affects gas exchange in organisms. (6) Question 2: Explain the processes of diffusion and osmosis, and give examples of each in cells. Answer: Diffusion is the movement of molecules from an area of high concentration to an area of low concentration, down a concentration gradient. This process occurs spontaneously and does not require energy. Osmosis is a special case of diffusion in which water molecules move across a selectively permeable membrane from an area of high concentration to an area of low concentration. Examples of diffusion in cells include the movement of oxygen and carbon dioxide across the plasma membrane during respiration and photosynthesis, and the movement of ions such as potassium and sodium across cell membranes. An example of osmosis in cells is the movement of water into and out of red blood cells. Question 3: Describe the process of active transport and the role of carrier proteins and ATP. Answer: Active transport is the movement of molecules across a membrane against their concentration gradient, from an area of low concentration to an area of high concentration. This process requires energy in the form of ATP (adenosine triphosphate), which is generated by the cell through cellular respiration. Carrier proteins in the membrane bind to the molecules being transported, and then use energy from ATP to change shape and move the molecules across the membrane. Examples of active transport in cells include the transport of ions such as sodium, potassium, and calcium across cell membranes, and the uptake of nutrients such as glucose by cells. Question 4: Explain the importance of exchange surfaces in organisms, and how their structure is related to their function. Answer: Exchange surfaces are structures in organisms that allow for the exchange of materials between the organism and its environment. Examples include the alveoli in the lungs, the villi in the small intestine, and the gills in fish. These structures have specialised features such as large surface areas, thin membranes, and a high concentration of transport proteins, that facilitate the exchange of molecules such as oxygen, carbon dioxide, and nutrients. The structure of exchange surfaces is related to their function in that they are designed to maximise the efficiency of exchange while minimising the energy required. For example, the villi in the small intestine have a large surface area due to their finger-like projections, which increases the surface area available for absorption of nutrients from food. The surface area to volume ratio is an important factor in gas exchange in organisms. Smaller organisms have a higher surface area to volume ratio than larger organisms. This means that a smaller organism has a larger surface area relative to its volume, which makes it easier for gases to diffuse across the cell membrane and reach the cells that need them. For example, single-celled organisms, such as amoeba, have a large surface area to volume ratio, which enables them to absorb oxygen and release carbon dioxide through their cell membrane by simple diffusion. On the other hand, larger organisms, such as mammals, have a lower surface area to volume ratio, which makes it harder for gases to diffuse across the cell membrane. Therefore, larger organisms have evolved specialized structures for gas exchange, such as lungs in mammals. 2. Describe the adaptations of gas exchange in insects with reference to the tracheal system. (6) Insects have a highly efficient respiratory system, which is adapted to their small size and active lifestyle. The respiratory system in insects consists of a network of tubes called tracheae, which are responsible for gas exchange. The tracheae are lined with a thin layer of cuticle and are supported by chitin rings that prevent them from collapsing. Air enters the body through small openings called spiracles, which are located on the surface of the insect's body. The spiracles are surrounded by muscles that control their opening and closing, which helps to prevent water loss. The air then diffuses through the tracheae and reaches the cells where gas exchange occurs. The tracheal system in insects is highly efficient because it allows for direct diffusion of gases between the cells and the environment. This eliminates the need for a circulatory system to transport gases and reduces the energy required for gas exchange. 3. Explain how the structure of leaves in dicotyledonous plants is adapted for gas exchange. (6) Dicotyledonous plants have specialised structures in their leaves that are adapted for gas exchange. These structures include stomata, mesophyll cells, and a network of veins. Stomata are small openings located on the surface of leaves that allow for the exchange of gases between the leaf and the environment. They are surrounded by guard cells, which regulate their opening and closing to prevent water loss. Mesophyll cells are specialised cells in the leaf that are responsible for photosynthesis. They contain chloroplasts, which capture light energy and convert it into chemical energy. The network of veins in the leaf provides support and transports water, nutrients, and gases to and from the leaf. The veins are surrounded by a layer of parenchyma cells, which help to maintain the structure of the leaf. The structure of leaves in dicotyledonous plants is highly efficient for gas exchange because it provides a large surface area for gas exchange and allows for direct diffusion of gases between the leaf and the environment. 4. Describe the mechanism of breathing in humans. (6) The mechanism of breathing in humans involves a series of steps that help in the exchange of gases between the body and the environment. The process is mainly driven by the diaphragm, a muscular structure that separates the chest cavity from the abdominal cavity. When the diaphragm contracts, it moves downwards, increasing the volume of the chest cavity, which in turn decreases the pressure within the lungs. This causes air to rush in through the nose or mouth and fill the lungs. Once the lungs are filled with air, the diaphragm relaxes and moves back up, decreasing the volume of the chest cavity and increasing the pressure within the lungs. This pressure forces the air out of the lungs and out of the body through the nose or mouth. The process of breathing is controlled by the respiratory centre in the brain, which constantly monitors the levels of oxygen and carbon dioxide in the body and adjusts the breathing rate accordingly. In addition to the diaphragm, the intercostal muscles between the ribs also play a role in breathing by expanding and contracting the chest cavity. The process of breathing is essential for the survival of humans as it ensures that oxygen is supplied to the body's tissues and carbon dioxide is removed from the body. Chapter 7: DNA, Genes, Chromosomes. 1. Explain the structure of nucleic acids, including DNA and RNA. (6 marks) Answer: Nucleic acids are the genetic material that encodes the instructions for the development and functioning of all living organisms. The structure of nucleic acids is based on a repeating unit called a nucleotide. A nucleotide consists of a phosphate group, a 5-carbon sugar (either deoxyribose in DNA or ribose in RNA), and a nitrogenous base (adenine, guanine, cytosine, or thymine in DNA, or uracil in RNA). The nitrogenous bases are held together by hydrogen bonds. In DNA, two polynucleotide chains are held together by hydrogen bonds between complementary base pairs, forming a double helix. In RNA, there is a single polynucleotide chain that can fold upon itself, forming secondary structures. 2. Describe the structure of mRNA and tRNA. (6 marks) Answer: Messenger RNA (mRNA) is a type of RNA that carries the genetic information from DNA in the nucleus to the ribosome in the cytoplasm, where it is used to synthesize proteins. mRNA is a single-stranded molecule that is made up of a sequence of nucleotides, with each nucleotide containing a sugar, a phosphate group, and a nitrogenous base. The nitrogenous bases in mRNA are adenine, guanine, cytosine, and uracil. Transfer RNA (tRNA) is another type of RNA that is involved in protein synthesis. tRNA molecules have a unique cloverleaf-shaped structure, with a single strand of RNA folding back on itself to form stem-loop structures. Each tRNA molecule has an anticodon, a sequence of three nucleotides that is complementary to a codon in mRNA. The anticodon of tRNA binds to the codon of mRNA, allowing the correct amino acid to be added to the growing protein chain. 3. Explain the organization of DNA in the eukaryotic nucleus. (6 marks) Answer: Eukaryotic DNA is organized into structures called chromosomes. A chromosome is a long, linear molecule of DNA that is tightly coiled around histone proteins. The DNA and histones together form a complex called chromatin. During cell division, the chromatin condenses further into visible chromosomes, which are then separated into daughter cells. In eukaryotic cells, there are typically several different chromosomes, each containing a different set of genes. The location of a gene on a chromosome is called its locus. Non-coding DNA, which does not code for proteins, is also present in chromosomes. Eukaryotic DNA also contains regions called telomeres, which protect the ends of the chromosomes, and centromeres, which are important for the separation of chromosomes during cell division. 4. What is a gene? Explain the difference between coding and non-coding genes. (6 marks) Answer: A gene is a segment of DNA that contains the instructions for making a specific protein. These instructions are encoded in the sequence of nucleotides in the gene. Genes are located on chromosomes, and the specific location of a gene on a chromosome is called its locus. Coding genes are those that contain the instructions for making a protein. The sequence of nucleotides in a coding gene is translated into a sequence of amino acids, which make up the protein. Non-coding genes, on the other hand, do not code for proteins. However, they may still have important regulatory functions. For example, some non-coding genes produce RNA molecules that are involved in the regulation of gene expression. 5. Explain the role of DNA replication in cell division. Answer: DNA replication is the process by which a cell makes an exact copy of its DNA before cell division occurs. The DNA molecule unwinds, and each strand serves as a template for the creation of a new complementary strand. The enzyme DNA polymerase then adds nucleotides to the growing new strand, following the base-pairing rules (A-T, C-G). This results in two identical DNA molecules, each containing one original strand and one newly synthesised strand. The two DNA molecules are then separated into two new cells during cell division. Accurate DNA replication is essential for maintaining the genetic information of the cell and passing it on to daughter cells. eventually reaches a terminator sequence that signals the end of the gene. The newly synthesized mRNA molecule then separates from the DNA template strand and is ready for translation. 6. Describe the structure and function of a gene. Answer: A gene is a sequence of DNA that encodes a specific protein or RNA molecule. It is made up of several different components, including a promoter region that controls when and where the gene is expressed, a coding region that specifies the sequence of amino acids in the protein or RNA molecule, and regulatory elements that control the activity of the gene. The coding region is transcribed into mRNA, which is then translated into a protein. The protein produced by a gene carries out a specific function in the cell, such as catalyzing a chemical reaction or transporting molecules across the cell membrane. 3. Discuss the role of ribosomes in protein synthesis. (6 marks) 7. Discuss the significance of the genetic code. Answer: The genetic code is the set of rules by which the sequence of nucleotides in DNA is translated into the sequence of amino acids in a protein. Each codon, or three-nucleotide sequence, specifies a particular amino acid or a start or stop signal for protein synthesis. The genetic code is universal, meaning that it is the same in all organisms, from bacteria to humans. This allows scientists to use genetic information from one organism to study the functions of genes in another organism. The genetic code also has important implications for genetic engineering and the development of new treatments for genetic diseases. CHAPTER 8: Protein synthesis 1. Explain the importance of the genetic code in protein synthesis. (6 marks) The genetic code is the set of rules by which the information in DNA is translated into proteins. It is important because it allows the sequence of nucleotides in DNA to be translated into the sequence of amino acids in a protein. The code is universal, meaning that it is the same in all living organisms, and it is non-overlapping, so each triplet of nucleotides codes for only one amino acid. The code is also degenerate, meaning that multiple triplets can code for the same amino acid, providing redundancy and reducing the impact of mutations. This allows the genetic code to be a reliable method for transmitting genetic information from generation to generation. 2. Describe the process of transcription in protein synthesis. (6 marks) Transcription is the process by which a segment of DNA is used as a template to create a complementary strand of messenger RNA (mRNA). RNA polymerase binds to the promoter region on DNA and separates the two strands of the double helix. It then adds nucleotides to the growing mRNA chain, using one strand of DNA as a template. RNA polymerase reads the DNA sequence and matches the complementary RNA nucleotide to each DNA nucleotide. The mRNA is synthesized in the 5' to 3' direction, and the RNA polymerase Ribosomes are organelles found in both prokaryotic and eukaryotic cells that play a crucial role in protein synthesis. They consist of a large and small subunit, each made up of proteins and ribosomal RNA (rRNA) molecules. Ribosomes are responsible for reading the information encoded in mRNA and assembling amino acids into a polypeptide chain according to the sequence specified by the mRNA. The small subunit of the ribosome binds to the mRNA, and the large subunit catalyzes the formation of peptide bonds between adjacent amino acids. The ribosome moves along the mRNA molecule, reading each codon and adding the appropriate amino acid to the growing polypeptide chain until a stop codon is reached, at which point the ribosome disassembles and the newly synthesized protein is released. 4. Explain the role of tRNA in protein synthesis. (6 marks) Transfer RNA (tRNA) is a type of RNA molecule that plays a crucial role in protein synthesis. Each tRNA molecule is specific for a particular amino acid, and has a three-nucleotide sequence called an anticodon that is complementary to a codon in mRNA. The tRNA molecule binds to the appropriate amino acid and carries it to the ribosome, where it can be incorporated into a growing polypeptide chain. The tRNA molecule recognizes the appropriate codon in the mRNA by base-pairing between its anticodon and the codon. Once the amino acid is incorporated into the polypeptide chain, the tRNA is released and can be recharged with another amino acid for use in another round of protein synthesis. 5. Describe the process of protein folding Protein folding is a crucial process for the proper functioning of proteins. The primary sequence of amino acids determines the protein's final folded structure, which is essential for its function. The process of protein folding is spontaneous and is driven by the protein's intrinsic physicochemical properties. The folding process involves the formation of non-covalent interactions between amino acid residues, such as hydrogen bonds, van der Waals forces, hydrophobic interactions, and electrostatic interactions. These interactions lead to the formation of secondary structures, such as alpha helices and beta sheets, which are further stabilised by hydrogen bonds. As the protein folds, the hydrophobic residues tend to be buried in the interior of the protein, while the hydrophilic residues are exposed to the solvent. This process is driven by the hydrophobic effect, which is the tendency of hydrophobic molecules to avoid contact with water. Finally, the protein attains its three-dimensional structure, which is stabilized by disulfide bonds between cysteine residues and other covalent bonds. The folded protein structure is essential for its function, and any disruptions in the folding process can lead to protein misfolding, aggregation, and disease. In summary, protein folding is a complex process involving the formation of non-covalent interactions, the burial of hydrophobic residues, and the stabilization of the protein's three-dimensional structure by covalent and non-covalent bonds. of genes. The homologous chromosomes then separate and move to opposite poles of the cell. In the second division (meiosis II), the sister chromatids of each chromosome separate and move to opposite poles of the cell. This results in the formation of four genetically diverse haploid daughter cells. 2. How does independent segregation of homologous chromosomes during meiosis result in genetically diverse daughter cells? 6. Explain the role of amino acid sequence in determining protein folding. (6 marks) The process of protein folding is essential for the formation of functional proteins. The amino acid sequence, also known as the primary structure of a protein, is the basis for protein folding. The primary structure is a linear sequence of amino acids that are joined together by peptide bonds. As the protein is being synthesised, the amino acid sequence determines how the protein will fold. The folding process is guided by the interactions between the different amino acid residues, which can include hydrogen bonds, electrostatic interactions, and hydrophobic interactions. These interactions determine the three-dimensional structure of the protein, known as the tertiary structure. In some cases, proteins require additional levels of folding to form their functional structure. These proteins, known as specialized proteins, require the assistance of chaperone proteins to fold correctly. Specialized proteins, such as antibodies and enzymes, have specific shapes that are essential for their functions. The amino acid sequence of a protein is determined by the base sequence of nucleic acids in DNA. DNA acts as a template for the production of messenger RNA (mRNA), which is then translated into a sequence of amino acids. Therefore, the sequence of nucleotides in DNA ultimately determines the sequence of amino acids in the protein and the folding of the protein. In conclusion, the amino acid sequence of a protein determines how the protein folds and ultimately its function. The sequence is determined by the base sequence of nucleic acids in DNA. Chapter 9: Genetic Diversity because of Meiosis 1. Explain the process of meiosis and how it results in the formation of genetically diverse daughter cells. During meiosis, a single diploid parent cell undergoes two rounds of nuclear division to form four haploid daughter cells. Meiosis begins with the replication of DNA during interphase. In the first division (meiosis I), homologous chromosomes pair up and exchange genetic material in a process called crossing over. This results in the formation of new combinations During meiosis, homologous chromosomes pair up and separate from each other during the first division. This separation is random and independent, meaning that the maternal and paternal chromosomes can end up on either side of the dividing cell. This results in genetically diverse daughter cells as each daughter cell receives a random combination of maternal and paternal chromosomes. 3. Explain how crossing over between homologous chromosomes during meiosis leads to genetic diversity among daughter cells. Crossing over occurs during meiosis when homologous chromosomes pair up and exchange genetic material. This results in the formation of new combinations of genes on each chromosome. As the homologous chromosomes separate during meiosis, each daughter cell receives a unique combination of maternal and paternal chromosomes. This process results in genetic diversity among the daughter cells. 4. Describe the chromosomal behaviour in photographs of meiosis. During meiosis, chromosomes condense and become visible as individual structures. During the first division, homologous chromosomes pair up and separate from each other, resulting in the formation of two cells, each with half the number of chromosomes as the parent cell. During the second division, the sister chromatids of each chromosome separate and move to opposite poles of the cell, resulting in the formation of four haploid daughter cells. The chromosomal behaviour in photographs of meiosis shows the progression of these events and the formation of genetically diverse daughter cells. 5. How does meiosis contribute to genetic diversity in sexually reproducing organisms? Meiosis is the process by which sexually reproducing organisms produce gametes, which are the cells that carry genetic information from one generation to the next. Meiosis results in genetically diverse daughter cells through the independent segregation of homologous chromosomes and the process of crossing over. These processes result in the formation of new combinations of genes on each chromosome, leading to genetic diversity among offspring. This genetic diversity is important for the survival of populations and the evolution of new species. Question 6: Explain how the process of meiosis leads to genetic diversity. (6) Answer: Meiosis is a process of cell division that produces haploid gametes with unique combinations of chromosomes. The process of meiosis increases genetic diversity in the following ways: 1. Independent assortment of homologous chromosomes: During meiosis I, homologous chromosomes align randomly along the metaphase plate, resulting in a random orientation of maternal and paternal chromosomes. This means that the daughter cells will receive different combinations of maternal and paternal chromosomes, resulting in genetic diversity. 2. Crossing over: During prophase I of meiosis, homologous chromosomes pair up and exchange segments of DNA, resulting in the exchange of alleles between chromosomes. This results in new combinations of alleles on each chromosome, leading to genetic diversity. 3. Random fertilisation: During sexual reproduction, gametes from different individuals combine randomly to form a zygote. This means that the combination of genetic material from two different individuals is random, resulting in genetic diversity. Overall, the combination of these three mechanisms leads to a high degree of genetic diversity in the offspring produced by sexual reproduction. Question 7: Describe and explain the behaviour of chromosomes during meiosis. Use photographs to support your answer. (6) Answer: During meiosis, chromosomes undergo a series of complex movements and interactions that ensure the proper distribution of genetic material to the daughter cells. The process of meiosis can be divided into two main stages: meiosis I and meiosis II. In meiosis I, homologous chromosomes pair up and exchange genetic material through a process called crossing over. This results in genetic recombination, which increases genetic diversity. The paired homologous chromosomes then separate and migrate to opposite poles of the cell, resulting in two haploid daughter cells. In meiosis II, the sister chromatids of each chromosome separate and migrate to opposite poles of the cell, resulting in four haploid daughter cells. The behaviour of chromosomes during meiosis can be observed through the use of microscopy and staining techniques. For example, Giemsa staining can be used to visualize the condensed chromosomes during metaphase of meiosis I. This reveals the paired homologous chromosomes aligned along the metaphase plate. In summary, the behaviour of chromosomes during meiosis involves a series of complex movements and interactions that ensure the proper distribution of genetic material to the daughter cells. The use of microscopy and staining techniques can help to visualize and understand these processes. Chapter 10: Species and taxonomy 1. Explain the concept of a species. (6 marks) A species is a group of organisms that share common characteristics and can interbreed to produce fertile offspring. This concept is based on the biological species concept, which defines a species as a group of individuals that can breed and produce viable offspring. It also takes into account the idea that members of a species share a common gene pool and are reproductively isolated from other species. The concept of a species is important for understanding biodiversity, conservation efforts, and evolution. 2. Describe the taxonomic hierarchy. (6 marks) The taxonomic hierarchy is a system of classifying organisms based on their characteristics and relationships to each other. At the highest level, organisms are classified into three domains: Archaea, Bacteria, and Eukarya. Within each domain, organisms are further classified into increasingly specific categories, from kingdom to species. The taxonomic hierarchy includes the following levels: domain, kingdom, phylum, class, order, family, genus, and species. Each level represents a group of organisms that share a set of characteristics, with species being the most specific level of classification. This system is useful for organizing and understanding the relationships between different organisms and is an important tool for research in biology and ecology. 3. How does immunology help clarify taxonomic relationships between organisms? (6 marks) Immunology helps clarify taxonomic relationships between organisms by studying the immune response of different species to similar pathogens. The immune response is highly specific to the antigen, or foreign substance, that triggers it. Therefore, the similarities and differences in the immune response of different species can provide insight into their evolutionary relationships. For example, if two species have similar immune responses to a particular antigen, it suggests that they share a common ancestor and are more closely related. On the other hand, if two species have very different immune responses, it suggests that they are more distantly related. By studying the immune response of different species, researchers can gain a better understanding of their evolutionary relationships and the development of the immune system. 4. How does genome sequencing help clarify taxonomic relationships between organisms? (6 marks) Genome sequencing is a powerful tool for clarifying taxonomic relationships between organisms. By comparing the genomes of different species, researchers can identify similarities and differences in their genetic makeup. The more similar the genomes, the more closely related the species are thought to be. This approach has been used to clarify the relationships between many different groups of organisms, from bacteria to mammals. For example, genome sequencing has shown that humans and chimpanzees share about 98% of their DNA, indicating a close evolutionary relationship. Similarly, genome sequencing has helped to clarify the relationships between different species of bacteria, fungi, and plants. By studying the similarities and differences in the genomes of different species, researchers can gain a better understanding of their evolutionary relationships and the processes that have shaped biodiversity. 5. Why is the concept of a species important for understanding evolution? (6 marks) The concept of a species is important for understanding evolution because it helps us understand how new species arise and how they are related to one another. The biological species concept defines a species as a group of individuals that can breed and produce viable offspring. This means that when two populations become reproductively isolated from each other, they can evolve independently and eventually become distinct species. By studying the patterns of speciation and the relationships between different species, researchers can gain insights into the mechanisms of evolution and the processes that drive biodiversity. Additionally, the concept of a species helps us understand the relationships between extinct and extant species, and can provide clues about the evolutionary history of life on Earth. Chapter 11: Biodiversity in a community 1. Explain how genetic diversity can be measured and provide examples of how it can be used to infer relationships between different organisms. (6 marks) Genetic diversity can be measured in various ways, such as by examining the base sequence of DNA or mRNA, or the amino acid sequence of encoded proteins. By comparing these sequences across different organisms, we can infer their genetic relationships and evolutionary history. For example, closely related organisms will tend to have similar sequences, while more distantly related organisms will have more differences. One example of this is the comparison of the cytochrome c protein across different species, which has been used to construct evolutionary trees. Another example is the measurement of allele frequencies in populations, which can help us to understand genetic variation within and between populations. 2. Define and explain the concept of species richness and how it can be used to measure species diversity. (6 marks) Species richness refers to the number of different species present in a given area or community. It is a simple measure of species diversity that takes into account only the number of species and not their abundance or distribution. Species richness can be used to compare the diversity of different communities or areas, and can also be used to track changes in diversity over time. For example, if a new species is introduced to a community, the species richness will increase. Conversely, if a species goes extinct, the species richness will decrease. However, species richness alone does not provide a complete picture of biodiversity, as it does not account for the relative abundance or distribution of different species. 3. Describe an index of diversity and how it differs from species richness as a measure of biodiversity. (6 marks) An index of diversity is a measure of biodiversity that takes into account both the number of species and their relative abundance. The most commonly used index of diversity is the Simpson's Diversity Index, which is calculated by taking the sum of the squared proportions of each species in a community. This index ranges from 0 (indicating no diversity) to 1 (indicating maximum diversity), and takes into account both the number of species and their relative abundance. Unlike species richness, which only considers the number of species present, an index of diversity provides a more comprehensive measure of biodiversity that takes into account the relative abundance of different species. 4. Explain how human activities can reduce biodiversity and provide specific examples. (6 marks) Human activities can have a significant impact on biodiversity, leading to the loss of species and ecosystems. One major cause of biodiversity loss is habitat destruction, which can occur through deforestation, land-use change, and urbanisation. Another cause is the introduction of non-native species, which can compete with native species and cause their decline. Pollution, overfishing, and climate change are other human activities that can negatively impact biodiversity. For example, overfishing can lead to the collapse of fish populations, while climate change can cause shifts in ecosystems and the extinction of species that cannot adapt to changing conditions. 5. How can immunology and genome sequencing help to clarify taxonomic relationships between organisms? (6 marks) Immunology and genome sequencing can both provide insights into the evolutionary relationships between different organisms. Immunology involves the study of the immune system and the ways in which organisms produce and respond to antibodies. By comparing the antibodies produced by different organisms, we can infer their genetic relationships and evolutionary history. Genome sequencing, on the other hand, involves the analysis of an organism's DNA sequence. By comparing the genomes of different organisms, we can identify similarities and differences in their genetic makeup, which can help us to infer their evolutionary relationships. REQUIRED PRACTICALS: Required Practical 1: Investigation of the effect of temperature, pH, or substrate concentration on the rate of an enzyme-controlled reaction 1. Explain how you could investigate the effect of substrate concentration on the rate of an enzyme-controlled reaction. (6 marks) To investigate the effect of substrate concentration on the rate of an enzyme-controlled reaction, you would need to prepare a series of enzyme and substrate solutions of different concentrations. You could then mix a fixed volume of enzyme solution with each substrate solution and start a timer to measure the time taken for a fixed amount of product to be produced. The reaction could be stopped using an appropriate method, such as adding acid or freezing the mixture, and the amount of product produced could be measured using a colorimetric assay or other appropriate method. By plotting the results on a graph, you could then determine the relationship between substrate concentration and reaction rate. Required Practical 2: Investigation of the effect of solute concentration on the uptake or loss of water from plant tissue 2. Describe how you could investigate the effect of solute concentration on the uptake or loss of water from plant tissue. (6 marks) To investigate the effect of solute concentration on the uptake or loss of water from plant tissue, you could first obtain a range of plant samples of the same species and size. You could then prepare solutions of different concentrations of a solute, such as sodium chloride, and measure the initial mass of each plant sample. Each plant sample could then be submerged in a solution of a different solute concentration and left for a fixed period of time, such as 30 minutes. After the time has elapsed, the plant samples could be removed, dried gently with paper towels, and their final masses measured. By comparing the initial and final masses, you could determine the amount of water that has been taken up or lost by each plant sample. By plotting the results on a graph, you could then determine the relationship between solute concentration and water uptake or loss. Required Practical 3: Use of chromatography to investigate the pigments present in leaves 3. Explain how you could use chromatography to investigate the pigments present in leaves. (6 marks) To use chromatography to investigate the pigments present in leaves, you could first obtain a range of leaf samples from different plants. A small section of each leaf could be cut and placed into a small tube containing a small amount of a suitable solvent, such as ethanol or acetone. The tube could then be placed into a beaker containing a small amount of the same solvent, allowing the solvent to rise up the tube and separate the different pigments present in the leaf. Once the solvent has reached the top of the tube, the tube could be removed and the location of each pigment could be marked. The different pigments could then be identified by comparing their positions to a standard reference, such as a known set of pigments or a published chromatogram. By analysing the results, you could then determine the types and relative amounts of pigments present in each leaf sample.