UNIVERSITY OF MAURITIUS MODULE SPECIFICATION SHEET 1. GENERAL INFORMATION Academic Year: 2012/2013 Semester(s): Yearly 2. Title Code Duration (hrs) No of credits Immunology, Parasitology & Applied Microbiology (Dr N Taleb-Hossenkhan) BIOS 3002Y(5) Lectures: 26.25 (Dr Taleb only) Practicals: 7.5 Seminars: Tutorials: Others (Specify): Total: 30 6 (total) (for the whole module) PRE-REQUISITE(S)/PRE-REQUIREMENT(S) A-level Biology 3. AIMS This module provides an introduction to modern immunological theory and practice covering the biology and chemistry of the immune response, including the chemistry, synthesis and biological properties of antibodies, structure of antigens and the chemistry of antibody-antigen interactions, receptor interleukins and associated mediator of immune cell function, antigen processing and presentation, the major histocompatibility complex, organisation and rearrangement of the immunoglobulin gene superfamily. 4. OUTLINE SYLLABUS The syllabus will detail the following main themes: Components of the immune system Principles of innate and adaptive immunity The recognition and effector mechanisms of adaptive immunity Innate Immunity Antibody structure and function Antibody genes and generation of diversity Antigen presentation to T lymphocytes The Major Histocompatibility Complex Chemical signaling 5. Production of armed effector T cells T-cell mediated cytotoxicity The Humoral Immune response LEARNING OUTCOMES Having studied this module, the students should be able to: Be aware that pluripotent hematopoietic stem cell from the bone marrow give rise to all the cell types that participate in both innate and adaptive immunity Explain what are the primary and secondary lymphoid organs and what are their functions Explain in detail what happens during inflammation, stating clearly the roles that are played by the different immune system cells Explain what is meant by lymphocyte receptor repertoire, clonotypic, clonal selection theory, clonal expansion, lymphoblast Describe the main functions of antibodies Describe in detail how epithelial surfaces function as the front line of defense in innate immunity Describe the role that phagocytes play in innate immunity Describe the main roles played by complement in innate immunity Describe the three main pathways in which complement can be activated, outlining the different enzymatic cascades that operate in the three main pathways Describe briefly the function of C3 convertase on pathogen surfaces and how phagocytes recognize complement-tagged pathogens, Describe how small fragments of some complement proteins can initiate a local inflammatory response Explain how the terminal complement proteins can polymerize to form pores in membranes that can kill certain pathogens Describe in detail the structure of a typical antibody molecule Describe briefly the molecular structure of the immunoglobulin heavy and light chains Describe how antibody molecules specifically interacts with antigen, mentioning which parts of the immunoglobulin makes contact with the antigenic peptides Describe the structure of the antigen receptor on T cells Describe the expression of the cell-surface proteins CD4 and CD8 on the surface of T cells and what are the functional consequences of this expression Explain how MHC molecules are differentially expressed on different immune system cells Explain how diversity in the immunoglobulin chains can be generated by rearrangement of DNA coding for each chain 6. Explain how diversity in the T cell receptors is achieved Explain clearly the function of MHC molecules and from where the peptides that are carried by MHC Class I and II molecules are derived from Describe briefly the genetic organization of the human HLA genes Explain clearly how polymorphism is achieved within the HLA gene cluster and what type of molecular interactions are influenced by this polymorphism Explain the terms allogenic, mixed lymphocyte reaction and alloreactivity in the context of recognition of non-self MHC molecules by T cells Explain the concept of superantigens Explain clearly how Antigen Presenting Cells (APCs), T cells and B cells interact in lymph node circulation and how naïve T cells are stimulated by sampling MHC:peptide complexes Describe the functions of the various cell adhesion molecules that mediate cell-cell interactions for lymphocyte activation and effector function Describe the co-stimulatory signals that are provided by APCs and that are required for clonal expansion of naïve T cells Explain the functioning of dendritic cells, their migration routes and the signals they respond to Describe the cytokines secreted by activated T cells, the co-stimulatory signals required for this secretion and the properties of T cells that have differentiated into armed effector T cells Describe how naive CD8 T cells can be activated in different ways to become armed cytotoxic effector cells Explain clearly how cytotoxic T cells can induce target cells to undergo apoptosis, detailing the molecular events that take place during this process Explain how macrophages can be activated by armed CD4 TH1 cells and how this activation is regulated to avoid tissue damage Explain clearly how a humoral immune response is initiated, including the concept of linked recognition COORDINATORS: Programme Coordinator Name Department Building Room Number Phone No. E-mail address Consultation Time DR SHOBHA JAWAHEER BIOSCIENCES NAC 5.9 Ext 7469 shobha@uom.ac.mu Module Coordinator 7. LECTURER(S) Name Department Building Room Number Phone No. E-mail address Contact Hours 8. DR N TALEB-HOSSENKHAN BIOSCIENCES NAC 5.7 Ext 7466 n.taleb@uom.ac.mu 10:00-16:00 DR SABRINA DYALL BIOSCIENCES NAC Basement Ext 7514 s.dyall@uom.ac.mu VENUE AND HOURS/WEEK All lectures and/or Practicals will normally be held in Room: 1.5, 10:45-12:00 Hours/week: 1.25 9. MODULE MAP Wk (s) 1 (1.5 hrs) 2 (1.5 hrs) 3 (1.5 hrs) Main themes Components of the immune system Principles of innate and adaptive immunity 4 (1.5 hrs) The recognition and effector mechanisms of adaptive immunity Innate Immunity I 5 (1.5 hrs) Innate Immunity II 6 (1.5 hrs) Antibody Structure & Function I Antibody Structure & Function II Antibody Genes & Generation of Diversity I Antibody Genes & Generation of Diversity II Revision & Tutorials Antigen presentation to T lymphocytes The Major Histocompatibility Complex Production of armed effector T cells I Production of armed effector T cells II 7 (1.5 hrs) 8 (1.5 hrs) 9 (1.5 hrs) 10 11 (1.5 hrs) 12 (1.5 hrs) 13 (1.5 hrs) 14 (1.5 hrs) Lecture titles Components of the immune system, generation of lymphocytes, the lymphoid organs, circulation of lymphocytes in the body Definition of innate immunity and its activation, antigen-presenting cells and induction of adaptive immunity, generation of lymphocyte receptor repertoires, clonal selection, the antibody molecule, generation of combinatorial diversity, immunological memory Effector functions of antibody, functions of T cells, role of the major Histocompatibility complex in Tcell recognition, defects in the immune system and disease, vaccination The front line of host defense, role of epithelial surfaces in defense, role of phagocytes, inflammation, introduction to the complement system Components of the complement system, the classical pathway, the mannan-binding lectin pathway, complement activation, the alternative pathway, role of complement in inflammation Structure of a typical antibody molecule: heavy and light chains, variable and constant regions, domains of the immunoglobulin molecule, interaction of antibody with specific antigen Antigen recognition by T cells, classes of MHC molecules and binding to CD4 and CD8 T cells The generation of diversity in immunoglobulins, immunoglobulin gene rearrangement, gene rearrangement in light chain families and heavy chain families, mechanisms of DNA rearrangement Mechanisms of DNA rearrangements in genes encoding T-cell receptors The generation of T-cell receptor ligands, delivery of peptides to the cell surface by MHC class I and II molecules, loading of peptides onto MHC molecules The polygenic nature of the MHC, genes encoded by the MHC, polymorphism at the MHC locus, effect of MHC polymorphism on recognition by T cells, superantigens Initiation of T cell responses in peripheral lymphoid organs, specific interactions between naïve T cells and APCs, role of cell adhesion molecules in cell-cell interactions, co-stimulatory signals Role of dendritic cells in activating naïve T cells, role of macrophages in activating naïve T cells, synthesis of IL-2 by activated T cells, differentiation of CD4 T cells into TH1 and TH2 cells 15 16 (1.5 hrs) 17 (1.5 hrs) 18 (1.5 hrs) 19 (1.5 hrs) 20 (1.5 hrs) 21 (1.5 hrs) 22 (1.5 hrs) 23 (1.5 hrs) 24 25 Revision & Tutorials T-cell mediated cytotoxicity I T-cell mediated cytotoxicity II The Humoral Immune Response I The Humoral Immune Response II Mini-Seminar Presentations Mini-Seminar Presentations Mini-Seminar Presentations Mini-Seminar Presentations Revision & Tutorials Revision & Tutorials Induction of Programmed Cell Death by cytotoxic T cells, molecules involved in the induction of apoptosis, action of Fas ligand in induction of apoptosis, release of cytokines by cytotoxic T cells Macrophage activation by armed CD4 TH1 cells, production of cytokines by armed CD4 TH1 cells, regulation of TH1 cell action, coordination of host response by TH1 cells B-cell activation by armed effector T cells, initiation of the humoral immune response, encounter of B cells with armed effector T cells in lymphoid tissue, proliferation of B cells in germinal centers Distribution and functions of immunoglobulin isotypes, transport of particular isotypes across epithelial barriers, activation of complement pathway by antigen:antibody complexes Various topics covered in the course 10. RECOMMENDED BOOKS/JOURNALS/WEBSITES 1. Immunobiology (Janeway, Travers, Walport, Shlomchik) 2. Immunology (Lydyard, Whelan, Fanger) 3. Essential immunology (Roitt) 11. ESSAY(S)/ASSIGNMENT(S)/PRACTICAL(S) Title 12. ASSESSMENT (i) Written Examination Maximum Marks Last Submission Date Paper Structure Sections (if any) No. of questions to be answered: Multiple Choice Questions Compulsory Questions (if any) Exams date: Paper Duration: Weighting (%): Total Marks: (ii) Pass Marks: Continuous Assessment Weighting (%) Assignment(s): Practical(s): Seminar(s): Test(s): Total Marks: 25%