UNIVERSITY OF NICOSIA – LIFE AND HEALTH SCIENCES General Biology I – BIOL-101 BIOMOLECULES Carbohydrates, lipids, proteins and DNA OBJECTIVES After the completion of the Laboratory exercise students should be able to: 1. Describe the tests indicating the presence of monosaccharides and disaccharides 2. Describe the test for the presence of starch. 3. Define hydrolysis and give an example of the hydrolysis of carbohydrates. 4. Describe the tests that indicate the presence of lipids. 5. Describe the tests for the presence of proteins. 6. Describe the tests for the presence of DNA INTRODUCTION Carbohydrates, lipids, proteins, and nucleic acids are the four major classes of organic compounds (biomolecules) in cells. Some of these compounds are very large and are called macromolecules. From these biomolecules, carbohydrates, lipids, and more rarely proteins (when nutrition is poor in carbohydrates and lipids for prolonged time) are used as fuel sources in the cell. Carbohydrates are found in bread, potatoes, cereals, pastas, fruits, vegetables and sweet foods. They are composed of carbon, hydrogen and oxygen. The hydrogen and oxygen occur in a 2:1 ratio, as in a molecule of water. The general formula for a carbohydrate is (CH2O)n=3-7. There are three types of carbohydrates: a. Monosaccharides. Simple sugars with one sugar molecule, e.g. glucose, fructose and galactose. The general formula for glucose is C6H12O6. b. Disaccharides. Double sugars with two sugar molecules, e.g. glucose + glucose = maltose, glucose + fructose = sucrose, glucose + galactose = lactose. (Monosaccharides and disaccharides dissolve in water and are sweet to the taste). c. Polysaccharides. Multiple sugars made up of many monosaccharide units linked together to form a very large molecule, e.g. starch, glycogen and cellulose. Polysaccharides are insoluble in water and are used as reserves of carbohydrate because they can be stored by the organism. Plants store their carbohydrates as starch, whilst animals utilize glycogen. Plants synthesize cellulose, which is a structural polypeptide. It consists entirely of glucose units, but it has different structure than starch and glycogen. Lipids or fats are found almost as pure fat in butter, lard and margarine. They are also found in foods such as milk, nuts and fatty meat. They are composed of carbon, hydrogen and oxygen, combined together in different proportions than the carbohydrates. Fats are made up of fatty acids and glycerol. Three molecules of fatty acids and one molecule of glycerol are united to form one molecule of fat. If there are no double bonds between the carbon atoms composing the fatty acid, it is called saturated fatty acid. An unsaturated fatty acid has one or more double bonds in its skeleton. The fatty acids of most animal fats are saturated, whereas liquid fats such as olive oil contain unsaturated fatty acids. Cell membranes consist mainly of phospholipid bilayer but the main role of fats is energy storage. Proteins are found in meat, fish, milk, cheese and eggs. They are composed of carbon, hydrogen, oxygen, nitrogen and sometimes sulphur and phosphorus. They are molecules which have a high molecular weight. They are made up of amino acids linked together with peptide linkages (CONH) to form long chains. Each amino acid has a basic amino group-NH2, at one end and an acidic carboxyl group-COOH, at the other end. The amino acid has also a lateral group-R, which varies depending on the particular amino acid, e.g. glycine is the simplest amino acid where the R group is an atom of hydrogen. Deoxyribonucleic acid or DNA is found in all living organisms. The function of DNA is information storage. Every living organism is defined by a “blueprint” that dictates what chemical building blocks are produced to make up the organism and how they are assembled. DNA consists of nucleotides. In each nucleotide one ring structure known as a nucleotide base is covalently bonded to a sugar, deoxyribose. There are four different nucleotide bases in DNA named, Adenine, Thymine, Cytosine and Guanine. The order in which different nucleotides are hooked together in DNA polymers determines the physical attributes of, and the chemical reactions that occur in, living organisms. LABORATORY WORK (2 hours) Materials and reagents Sugar solutions (glucose, fructose, sucrose, starch), I2/KI solution, egg albumin solution, Fehling solution, Benedict solution, ninhydrin solution, Cu2SO4, dilute HCl, concentrated HNO3, solid sodium bicarbonate, sodium hydrogen carbonate, Sudan III dye, ethyl alcohol, test tubes, absorbent paper, hot plates, pH-paper, Pasteur pipettes, glassware. Hypothesis: Prediction: Part One Tests for sugars Fehling’s Test Monosaccharides 1. To 1 ml of glucose solution (use 0.1-1% for sugar solutions) add sufficient Fehling’s solution to give the contents of the test tube blue color. (Fehling’s solution is made by mixing equal volumes of Fehling’s 1 and 2 together). Boil for 1 minute. An orange-red precipitate of copper oxide indicates the presence of a reducing sugar. The copper sulphate in the Fehling’s solution has, therefore, been reduced to copper oxide. Hence glucose is often referred to as a reducing sugar. Disaccharides 2. Now test for the disaccharide sucrose (a non-reducing sugar). Proceed as in step 1. Did you observe any changes? Sucrose is a non-reducing sugar, so it must be broken down into its constituent monosaccharide units before Fehling’s test can be carried out. If sucrose is boiled with diluted hydrochloric acid, it will be hydrolyzed to glucose and fructose. 3. Add 2 ml of sucrose solution to a test tube. Add 0.5 ml diluted hydrochloric acid. Put the tube into boiling water for 1 minute. Then, carry out Fehling’s test. Iodine test for starch To 1 ml of a fresh solution of 1% starch add a few drops of iodine solution. A blue-black color indicates the presence of starch. Part Two Tests for lipids Emulsion test Take 2 ml of ethyl alcohol (ethanol) in a test tube and add 1 ml of olive oil. Shake well so that the oil mixes in well with the alcohol. Now add 2 ml of cold water. The presence of fats is indicated by the formation of small droplets or globules of fat in suspension. These droplets give a milky appearance. The formation of droplets and globules is due to hydrophobic interactions with water. Lipids are immiscible with water. Adding water to a solution of a lipid in alcohol, results in an emulsion of tiny lipid droplets which reflect light and give a white appearance. Sudan III test Sudan III is a red dye. Add 2 ml of oil to 2 ml of water in a test tube. Add 4-5 drops of Sudan III and shake. A red stained oil layer separates on the surface of the water, which remains uncolored. Fat globules are stained red and are less dense than water. Part Three Tests for proteins Biuret test To 2 ml of a 1% solution of egg albumin (BSA) add 3 ml of 40% sodium hydroxide and shake the test tube well. Then add 5 drops of 1% copper sulphate. A violet color indicates the presence of protein. The Biuret test indicates the presence of peptide linkages between amino acids. In the presence of dilute copper sulphate in alkaline solution, nitrogen atoms in the peptide chain form a purple complex with copper (II) ions (Cu2+). Biuret is a compound derived from urea, which also contains the –CO-NH- group and gives a positive result. Xanthoproteic test To 3 ml of 1% egg albumin (BSA) add 1 ml of concentrated nitric acid. A white precipitate should appear. Boil until the solution is yellow. Cool and add 2 ml of concentrated 40% NaOH to give an orange color. This indicates the presence of protein. The xanthoproteic test indicates the presence of specific amino acids, e.g. tyrosine, tryptophan and phenylalanine due to specific groups on them. Part four Test for DNA Diphenylamine test DNA can be specifically detected using the Dische diphenylamine reagent. The deoxyribose moeity of DNA is converted to a molecule which binds with diphenylamine to form a blue colour, which is proportional to the concentration of DNA. The diphenylamine test is thus a quantitative test for DNA. Obtain two test tubes and add 1 ml of DNA solution to #1, and add 1 ml of water to #2. Then add 2 ml diphenylamine reagent to each, place in a boiling water bath for ten minutes and look for a light blue colour forming. Identify the unknown samples of various biomolecules solutions you are given in the table. Questions for discussion What subunits make up Carbohydrates, Proteins, DNA You have been given an unknown solution. Describe how you would test it for the presence of: Starch, Lipid, Monosaccharides, Protein, DNA. You have tested an unknown sample containing only one type of macromolecule with biuret and Fehling’s tests. The solution when mixed with biuret reagent becomes violet. The same solution when boiled with Fehling’s reagent changes to Brownish-orange. What does this tell you about the sample? Whole butter gives negative test for protein. When the same butter is clarified, however, the liquid lower layer is definitely positive for protein. Explain why these different results might have been obtained. References 1. Campbell, N.A. 1999. Biology. (5th ed.). Benjamin-Cummings. 2. Robinson, M.A. and Wiggins, J.F. 1989. Animal Types 2: Vertebrates. Hutchinson & Co. (Publishers) 3. Fragoulis, E.G. 1992. Laboratories of Biochemistry I & II. University of Athens, Department of Biology