Answer Key Unit 3 Molecular Genetics Answers to Unit 3 Preparation Questions Assessing Student Readiness (Student textbook pages 198–201) 1. Characteristic Prokaryotes Eukaryotes Relative cell size small large Cell number in typical organism single multiple Location of genetic material cytoplasm nucleus Membrane-bond genetic material no yes Number of chromosomes one several 2. c 3. Any three of: they are not cells; they have no cytoplasm, cell membrane, or organelles; they cannot reproduce outside of host cells; they are dormant outside of host cells. 4. c 5. d 6. d 7. a. endoplasmic reticulum (ER) b. Synthesis of proteins and synthesis of lipids and lipid-containing molecules. For example, in the liver, the ER helps detoxify the blood of drugs and alcohol. In the testes and ovaries, the ER produces testosterone and estrogen. 8. c 9. e 10. d 11. Enzymes help facilitate chemical reactions by acting as protein catalysts that increase the rate of the reaction. 12. These indentations (active sites) facilitate substrateenzyme binding as the active site changes in shape to accommodate the substrate in what is called induced fit. 13. Enzymes are classified according to the type of reactions they catalyze. 14. nucleotide → nucleic acid → gene → protein Nucleotides are the building blocks of nucleic acids, which make up genes, which code for proteins. 15. d 16. a. Hydrogen bonds link nucleotides together between the two strands that make up a DNA molecule. These bonds occur between complementary bases. b. The covalent bonds that link adjacent nucleotides together within each strand are called phosphodiester bonds. These bonds occur between the phosphate group on one nucleotide and a hydroxyl group on the sugar of the next nucleotide in the same strand. 17. e 18. An allele is a different form of the same gene. Homologous chromosomes carry two alleles of the same gene. Differences in these alleles account for differences in hair colour. 19. a 20. a 21. e 22. • Deletion—a piece of a chromosome is cut out • Duplication—a piece of a chromosome appears twice or more • Inversion—a piece of a chromosome is flipped • Translocation—a segment of a chromosome is attached to another chromosome 23. a. prophase I b. crossing over c. During crossing over, the chemical bonds that hold the DNA together in the chromosome are broken and reformed. In some cases, the chromosomes do not reform correctly. 24. The chromosome errors described result in genetic disorders when they delete, alter, or duplicate genes. In some case, however, the errors affect regions of the genome that lack genes or are within non-coding regions of a gene. These errors are not harmful. 25. d Biology 12 Answer Key Unit 3 • MHR TR 1 26. Sample answer: Genetic engineering can create transgenic organisms that secrete a human protein for medical use. First, the human gene that codes for the protein is injected into an egg from a donor goat. Then the egg is placed in a host goat where a transgenic goat develops. Finally, this transgenic goat produces milk containing the human hormone. 27. c 28. Viruses enter host cells and direct the activity of their host cell’s DNA. This makes viruses useful tools for producing a copy of a gene. Researchers can insert the gene of interest into the virus genome. The virus then directs the host cell to make multiple copies of the virus; each new virus that the cell produces will contain the gene of interest as well. 29. a. transgenic or genetically modified organism b. It has a different genotype, as it now contains four new genes c. It has a different phenotype, as it now displays higher levels of iron, vitamin A, sulfur, and a new enzyme. Chapter 5 The Structure and Function of DNA Answers to Learning Check Questions (Student textbook page 207) 1. Genetic material must contain information that regulates the production of proteins. It also must be able to accurately replicate itself to maintain continuity in future generations. Genetic material must allow for some mutations so that there is variation within a species. 2. Griffith used two forms of S. pneumoniae: a pathogenic S-strain and a non-pathogenic R-strain. After injecting mice with a mixture of heat-killed S-strain and live R-strain, the mice died. Griffith concluded that something from the heat-killed S-strain transferred to the R-strain to transform it into a pathogenic form. 3. • When they treated heat-killed pathogenic bacteria with a protein-destroying enzyme, transformation still occurred. • When they treated heat-killed pathogenic bacteria with a DNA-destroying enzyme, transformation did not occur. These results provided strong evidence for DNA’s role in transformation. 2 MHR TR • Biology 12 Answer Key Unit 3 4. Two different radioactive isotopes were used to trace each type of molecule. One sample of T2 virus was tagged with radioactive phosphorus (32P), since phosphorus is present in DNA and not protein. The other sample of T2 virus was tagged with radioactive sulfur (35S), since sulfur is only found in the protein coat of the capsid. 5. The independent variable in the experiment was the type of radioactive isotope used to tag the virus. The dependent variable in the experiment was the presence of radioactivity inside the infected bacterial cells. Controls include the usage of the same type of virus in both experiments and the usage of the same protocol for infecting bacterial cells in both experiments. 6. Bacterial cells that are infected by viruses with 32 P-labelled DNA would not be radioactive. Bacterial cells infected by viruses with 35S-labelled capsid proteins would be radioactive. (Student textbook page 212) 7. Answers should resemble Figure 5.4 on page 208 of the student textbook, with labels for phosphate group, sugar group, and nitrogen-containing base. 8. Nucleotides in DNA have a deoxyribose sugar, while nucleotides in RNA have a ribose sugar with a hydroxyl group at carbon 2. In addition to the sugar group, each nucleotide is attached to a phosphate group and a base. The bases are adenine, cytosine, guanine, and thymine in the case of DNA, and adenine, cytosine, guanine, and uracil in the case of RNA. 9. Chargaff ’s rule states that, in the DNA nucleotides, the amount of adenine will be more or less equal to the amount of thymine, and the amount of guanine will be equal to the amount of cytosine. The number of A-T nucleotides will not necessarily equal the number of C-G nucleotides. This overturned Levene’s earlier hypothesis that the nucleotides occurred in equal amounts and were present in a constant and repeated sequence. 10. Franklin used X-ray photography to analyze the structure of DNA. Her observations provided evidence that DNA has a helical structure with two regularly repeating patterns. She also concluded that the nitrogenous bases were located on the inside of the helical structure, and the sugar-phosphate backbone was located on the outside, facing toward the watery nucleus of the cell. Pauling’s methods of assembling three-dimensional models of compounds led to the discovery that many proteins had a helical structure. Watson and Crick also used this information to propose that DNA had a helix shape. 11. Diagrams should resemble Figure 5.7B on page 213 of the student textbook. Base pairing and directionality of strands should be shown. 12. Nucleic acids are soluble in water. Therefore, the nitrogenous bases, which are somewhat hydrophobic, must be positioned away from the water found in the nucleoplasm, and the polar phosphate groups (which are hydrophilic) must be on the outside of the molecule, interacting with the water. (Student textbook page 222) 13. The main objective of DNA replication is to produce two identical DNA molecules from a parent DNA molecule. 14. DNA replication occurs during the S phase of interphase, prior to cell division, ensuring that there is a copy available for each new daughter cell. 15. • Conservative model—Two new daughter strands form to create a new double helix, and the original DNA strands re-form into the parent molecule. • Semi-conservative model—Each new DNA molecule contains one strand of the original DNA and one newly synthesized strand. • Dispersive model—Parental DNA is broken into fragments. Therefore, the daughter DNA contains a mix of parental and newly synthesized DNA. 16. Nitrogen is a component of DNA and is incorporated into newly synthesized daughter strands. Having a “light” form (14N) and a “heavy” form (15N) allowed the separation of different DNA strands based on the amount of isotope present in the newly synthesized DNA. DNA with more 15N would be denser than DNA with 14N, and could therefore be separated by centrifugation. 17. Meselson and Stahl concluded that DNA replication is semi-conservative. After one round of replication, DNA appeared as a single band, midway between the expected positions of 15N-labelled DNA and 14 N-labelled DNA. After the second round of replication, DNA appeared as two bands, with one band corresponding to 14N-labelled DNA and the other band in the position of hybrid DNA (half 14N and half 15N). In additional rounds of replication, the same two bands were observed, therefore supporting the semi-conservative model. 18. Each new cell that is produced must have an exact copy of parental DNA. The daughter strands of DNA are part of a DNA molecule that will be in the daughter cells. This ensures that newly born cells are similar to parents and maintain their genetic identity. (Student textbook page 227) 19. Initiation—Helicase enzymes unwind DNA to separate it into two strands. A replication bubble is formed when single-strand binding proteins stabilize the separated strands. Elongation—New DNA strands are synthesized by joining free nucleotides together. This is catalyzed by DNA polymerase, which synthesizes the new strands that are complementary to the parental strand. Termination—The two new DNA molecules separate from one another. 20. Replication takes place in a slightly different way on each DNA strand because DNA polymerase can only catalyze elongation in the 5′ to 3′ direction. In order for both strands of DNA to be synthesized simultaneously, the method of replication must differ. 21. On the leading strand, DNA synthesis takes place along the DNA molecule in the same direction as the movement of the replication fork. On the lagging strand, DNA synthesis proceeds in the opposite direction to the movement of the replication fork. The lagging strand is synthesized in short fragments called Okazaki fragments. 22. DNA replication requires the use of many enzymes that have specific roles. The presence of numerous specialized enzymes may reflect the importance of having accurate DNA replication, since mutations in DNA can change the genetic makeup of an organism. 23. Answers may include: DNA polymerases have a proofreading function during which they excise incorrect bases and add the correct bases. Mismatch repair involves a group of enzymes that identify, remove, and replace incorrect bases. 24. Many tissues and organs require continuous cell regeneration. Therefore, DNA replication must be quick and accurate so that new daughter cells receive exact copies of DNA from the parent cell. Answers to Caption Questions Figure 5.2 (Student textbook page 205): If a live strain had been transferred, the effects would have been due to that strain, not due to the transfer of a substance form it to the R-strain, which makes it pathogenic. Figure 5.3 (Student textbook page 207): The results would have also shown that protein was not the hereditary material. However, it would not have directly demonstrated the role of DNA as the hereditary material since RNA also contains phosphorus. Biology 12 Answer Key Unit 3 • MHR TR 3 Figure 5.10 (Student textbook page 215): Twisting a rubber band around itself mimics how DNA supercoiling. The rubber band becomes compacted due to the coils that twisting forms. This model is also useful since it demonstrates the tension that is created by supercoiling. A rubber band may become linearized, where supercoiling in bacterial DNA occurs because it is a circular. The rubber band model also does not reflect the double-stranded nature of DNA. Figure 5.16 (Student textbook page 221): If DNA had not been uniformly labelled with 15N, the banding patterns would not accurately reflect the presence of parental DNA. Answers to Section 5.1 Review Questions (Student textbook page 218) 1. Griffith’s experiments showed the existence of a transforming principle. That is, something in the heatkilled pathogenic bacteria (S-strain) could transform the non-pathogenic bacteria (R-strain) into a pathogenic form. This result led to Avery’s experiments on Streptococcus pneumoniae to identify the molecules that caused this transformation. Avery’s research concluded that DNA was the transforming principle. 2. a. Graphic organizers should include information about experimental setup (i.e., the use of two radioactive isotopes to differentially label DNA and capsid protein), experimental procedure (i.e., the use of agitation in a blender to dislodge viruses, and subsequent centrifugation), and results. A summary of the experiment is found in Figure 5.3 on page 207 of the student textbook. b. The results showed that DNA is the hereditary material. 3. Miescher isolated nuclein from the nucleus of white blood cells. He found that this material was present only in the nuclei of cells. Further experimentation showed that nuclein was a weakly acidic phosphoruscontaining substance. Nuclein would later be known as nucleic acid or, more specifically, DNA (deoxyribonucleic acid). 4. Diagrams should resemble the marginal portion of Figure 5.4 on page 208 of the student textbook. 5. The nucleotide composition of the human would be different from the nucleotide composition of the mouse because the composition of DNA is unique to each species. However, the percentage of adenine will remain approximately the same as the percentage of thymine, and the percentage of cytosine will remain approximately equal to the percentage of guanine in each species. 4 MHR TR • Biology 12 Answer Key Unit 3 6. C = 26%; G = 26%; T = 24% 7. Diagrams should include labels for sugar-phosphate molecules (“handrails”), nucleotide base pairing (“rungs”), and directionality of both strands and resemble the close up of Figure 5.7 on page 213 of the student textbook. 8. a. Levene proposed that DNA was composed of nucleotides, and that each of the four types of nucleotides contained one of four nitrogen-containing bases, a sugar molecule, and a phosphate group. b. Chargaff showed that DNA is composed of repeating units of nucleotides in fixed proportions (i.e., the percent composition is of adenine is the same as thymine, and the percent composition of cytosine is the same as guanine). Chargaff ’s rule helped Watson and Crick infer that adenine paired with thymine, and cytosine paired with guanine. c. Franklin determined that DNA had a helical structure, with nitrogenous bases located on the inside of the structure, and the sugar-phosphate backbone located on the outside. This information led to Watson and Crick’s ladder-like double helix model of DNA, with the sugar-phosphate molecules acting as “handrails” and the bases making up the “rungs.” d. Pauling discovered that proteins have a helical structure. This discovery influenced Watson and Crick to propose that DNA was shaped like a helix. 9. a. 5′-ATTGAACAT-3′ b. 5′-GATTAACGG-3′ c. 5′-CGGAGCTAA-3′ 10. A gene is a functional unit of DNA. It is a specific sequence that encodes for proteins or RNA molecules. A genome is an organism’s complete genetic makeup. It is composed of an organism’s total DNA sequence. 11. Venn diagrams should include: • Prokaryotes Only—double-stranded, circular DNA packed in the nucleoid; DNA is compacted via supercoiling; most are haploid; genomes contain very little non-essential DNA; contain plasmids • Prokaryotes and Eukaryotes—chromosomal DNA is much larger than their cells, and therefore must be compacted • Eukaryotes Only—total amount of DNA is much greater than in prokaryotes, and they therefore have greater compacting and levels of organization (i.e., nucleosomes, chromatin, chromosomes); doublestranded linear DNA is contained in the nucleus; most are diploid; genomes can vary widely in size and complexity (i.e., some have large non-coding regions) 12. Diagrams should include the DNA molecule winding around histones to form nucleosomes, which are connected to each other by DNA and may resemble Figure 5.12 on page 216 of the student textbook. 13. a. There is no set relationship between the complexity of an organism (number of genes in an organism) and the total size of its genome. An organism may have an enormous number of base pairs in its genome and very few genes if the bulk of its genome consists of non-coding DNA. b. Comparing the genomes of the two organisms would show what genes they have in common, and would indicate their evolutionary relationship—how closely or distantly related they are. 14. A mutation in a protein-coding region would not necessarily be more detrimental than a mutation in a non-coding region since the latter may contain regulatory sequences (i.e., regions that can influence the production of proteins and RNA molecules). In addition, since multiple codons exist for a given amino acid, a mutation in the protein-coding region of DNA may not alter the protein sequence. Answers to Section 5.2 Review Questions (Student textbook page 229) 1. Daughter cells must have the same genetic information as parent cells. 2. a. Flowcharts should include a summary of experimental steps and results shown in Figure 5.16 on page 221 of the student textbook. b. If DNA replication was conservative, only two bands would appear following one round of replication: one band of 14N-only DNA (newly synthesized DNA), and one band of 15N-only DNA (old parental DNA). Diagrams should show two distinct bands, one labelled “light (14N) and the other labelled heavy (15N). 3. • Initiation—Replication begins at the replication origin. Helicases bind to the DNA at each replication origin. The helicases cleave and unravel a section of the original double helix, creating Y-shaped areas (replication forks) at the end of the unwound areas, which form a replication bubble. Single-strand binding proteins stabilize the separated strands. These single strands serve as templates for the semiconservative replication of DNA. • Elongation—New DNA strands are produced when DNA polymerase inserts into the replication bubble. A primase synthesizes an RNA primer that serves as the starting point of new nucleotide attachment by DNA polymerase. DNA polymerase can only synthesize the new nucleotide chain in the 5′ to 3′ direction. As a result, one strand (the leading strand) is replicated continuously in the 5′ to 3′ direction, in the same direction that the replication fork is moving. The other strand, known as the lagging strand, is replicated in short segments, still in the 5′ to 3′ direction, but away from the replication fork. These fragments, called Okazaki fragments, are joined together by DNA ligase. • Termination—When replication is complete, the two new DNA molecules separate from one another and the replication machine is dismantled. Each new molecule of DNA contains one parent strand and one new strand. 4. Early development is a very rapid process, and many key molecules are produced during this time. Therefore, it is expected that more replication origins would be present in developing embryo cells. 5. A replication bubble is formed as the DNA double helix unwinds during initiation. The replication forks are the Y-shaped regions of the replication bubble, and move along the DNA in opposite directions as replication proceeds. Diagrams should resemble the third portion of Figure 5.17 on page 223 of the student textbook, with labels on the replication bubble, replication fork, and the double-headed arrow showing the direction(s) of unwinding. 6. Diagrams should illustrate continuous DNA synthesis on the leading strand and discontinuous DNA synthesis on the lagging strand. Diagrams may resemble a simplified version of Figure 5.19 on page 224 of the student textbook with labels for leading strand, lagging strand, Okazaki fragments, RNA primer, DNA polymerase, DNA ligase, parent DNA, and directionality of strands. 7. An RNA primer is necessary for DNA synthesis on the lagging strand. The primer provides a free 3′-hydroxyl end, which DNA polymerase can extend by adding new nucleotides. 8. DNA polymerase adds new nucleotides to the 3′ end of a growing chain during replication. DNA polymerase also proofreads newly formed base pairs and replaces any nucleotides that have been incorrectly added. 9. a. No RNA primer would be synthesized. Therefore, synthesis of the lagging strand cannot be initiated. b. Okazaki fragments on the lagging strand cannot be joined together. c. Unwinding of the DNA double helix during initiation would not occur. Biology 12 Answer Key Unit 3 • MHR TR 5 10. A—The semi-conservative model states that each new molecule of DNA would contain one strand of original parent DNA and one new strand of daughter DNA. B—The dispersive model states that new molecules of DNA would be hybrids containing a mixture of old parent DNA and new daughter DNA strands. C—The conservative model states that one molecule of DNA would contain two new daughter DNA strands, and the other molecule of DNA would contain the original parent DNA strands. 11. Graphic organizers should include: • Prokaryotes Only—rate of replication is faster compared to eukaryotes; five DNA polymerases have been identified in prokaryotes; circular chromosome of prokaryotes have a single replication origin • Prokaryotes and Eukaryotes—require replication origins; have 5′–3′ elongation; have continuous synthesis on the leading strand, and discontinuous synthesis on the lagging strand; require a primer for Okazaki fragments on the lagging strand; require the use of DNA polymerase enzymes • Eukaryotes Only—rate of replication is slower compared to prokaryotes due to complicated enzymes complexes and proofreading mechanisms; 13 DNA polymerase enzymes have been identified in eukaryotes; linear chromosome has multiple replication origins; presence of telomeres due to linear nature of eukaryotic chromosome Answers to Chapter 5 Review Questions (Student textbook pages 235–9) 1. d 2. b 3. e 4. b 5. c 6. c 7. b 8. d 9. b 10. a 11. d 12. d 13. a 14. a 6 MHR TR • Biology 12 Answer Key Unit 3 15. a. While studying DNA in the early 1900s, Phoebus Levene reported that the nucleotides were present in equal amounts, and that they appeared in chains in a constant and repeated sequence of nitrogen bases. Therefore, most scientists thought that the great variety of proteins was an important factor, and must be the hereditary material. Scientists assumed that the molecular structure of DNA was just too simple to provide the great variation in inherited traits. b. Oswald Avery, Colin MacLeod, and Maclyn McCarty conducted a series of experiments and discovered: • When they treated heat-killed pathogenic bacteria with a protein-destroying enzyme, transformation still occurred. • When they treated heat-killed pathogenic bacteria with a DNA-destroying enzyme, transformation did not occur. These results provided evidence that genetic information was carried on DNA. 16. Franklin’s X-ray diffraction images showed that DNA had a helical structure, with two regularly repeating patterns. She also concluded that the sugar-phosphate backbone was located on the outside, and the nitrogencontaining bases protruded inward. Watson and Crick used these observations to construct the threedimensional model of DNA. 17. a. Each body cell produces two daughter cells from itself, and one of the two strands could go to each daughter cell. b. With bases on the outside, the DNA would not be uniform width throughout, which all evidence indicated. Also, the weak hydrogen bonds between the nitrogen bases could be broken easily. The bonds between the sugar and phosphate portions of the nucleotides are much stronger. c. From Franklin’s X-ray photographs, they reasoned that DNA was twisted into a spiral, or helix. Since the spiral consisted of two strands wound around each other, they called it a double helix. 18. Eukaryotic DNA is compacted in the nucleus through different levels of organization. DNA associates with histones to form nucleosomes. It can be further compacted by the coiling of nucleosomes to produce 30 nm fibres. Additional compacting is achieved through the formation of loop domains of the 30 nm fibre on a protein scaffold. This scaffold can condense further through folding. 19. Purines, such as adenine and guanine, have a doublering structure. Pyrimidines, such as thymine and cystosine, have a single-ring structure. 20. Hydrogen bonds between the bases hold the two strands of DNA together. 21. The two strands of a DNA molecule are antiparallel since each strand has directionality. At each end of the DNA molecule, the 5′ end of one strand is across from the 3′ end of the complementary strand. 22. Since nitrogen is a component of DNA, it would be incorporated into newly synthesized strands of DNA. Two different isotopes of nitrogen were used to distinguish between the original parental strand and the newly synthesized daughter strand. Furthermore, having a “light” form (14N) and a “heavy” form (15N) of nitrogen allowed the separation of different DNA strands based on the amount of isotope present in the newly synthesized DNA. DNA with more 15N would be denser than DNA with 14 N, and therefore could be separated by centrifuge and visualized. 23. Producing exact copies ensures that when a cell divides, the offspring cells will receive the same genetic information as the parent cell. 24. An RNA primer is required for discontinuous synthesis of DNA on the lagging strand. The RNA primer provides a free 3′ hydroxyl end from which DNA polymerase can add nucleotides. 25. The replication machine consists of the complex of proteins and DNA that interact at the replication fork. These proteins include DNA polymerase, an enzyme that joins nucleotides together to create a complementary strand of DNA (elongation); DNA ligase, an enzyme that joins Okazaki fragments together; primase, an enzyme that constructs the RNA primer needed for replication to begin; helicases, a group of enzymes that cleave and unravel a segment of the double helix to enable replication; and single-strand binding proteins, which help stabilize the unwound strands. division become mutations in the genome, which are passed on to daughter cells once cell division occurs. 28. Telomeres are present to ensure that important genetic information is not lost during replication of linear eukaryotic DNA. 29. Nucleotides can come fully-formed from a variety of food sources. Nucleotides can also be formed by our bodies using components that come from our diet (i.e., sugar, phosphates, nitrogen). 30. Different tissues all develop from the same fertilized egg cell (zygote). While the tissues have the same genes, only those genes necessary for a specific tissue’s functions are active. 31. Sample answer: There are some similarities. However, DNA “words” are limited to sequences of amino acids. Each section of code has only “one meaning,” resulting in one specific protein. This does not compare to the arrangement of letters in a language, which results in words that can have a great variety of meanings. 32. a. 5′-GATGTACAG-3′ b. 5′-ATCAGCGAT-3′ c. 5′-AATACGCCG-3′ 33. G = 16%, T = 34% 34. Sample B is the viral DNA because the percentages of adenine and thymine are not the same. Similarly, the percentages of guanine and cytosine are not the same, as they are in sample A, which shows complementary base pairing of these respective bases. Complementary base pairing does not occur in a single-stranded DNA virus. 26. Having multiple origins of replication increases the speed of replication. Instead of starting at one end and finish at another, having multiple start points increases the efficiency of replication. 35. a. Sample answer: The small fragments could be Okazaki fragments that were not joined together properly. This could be due to a lack of ligase, a mutant ligase, or a mutation in the ligase gene that produces a mutant ligase enzyme. b. Experimental design should include the experimental setup, proper controls (i.e., one reaction tube with cells cultured without ligase, and another with ligase), and expected results. 27. DNA polymerase has a proofreading mechanism, which identifies and excises an incorrect nucleotide, and then inserts the correct nucleotide. Another mechanism of error correction is mismatch repair, where a group of enzymes can detect deformities in the newly synthesized strand of DNA caused by mispairing of nucleotides. This group of enzymes excises the mispaired nucleotides and inserts the correctly paired nucleotide. Errors that are not corrected before cell 37. Linker DNA is responsible for joining nucleosomes together. Micrococcal nuclease preferentially cuts linker DNA, which would lead to disrupted formation of 30 nm fibres. Diagrams should include an illustration of the “beads on a string” appearance 36. A similar base composition does not necessarily mean that the DNA sequences are similar (i.e., the order of the nucleotides in the DNA sequence are not necessarily the same in both organisms). Biology 12 Answer Key Unit 3 • MHR TR 7 of eukaryotic DNA organization with labels for DNA, histones, nucleosomes, and linker DNA (refer to Figure 5.12 on page 216 of the student textbook). An accompanying diagram should illustrate micrococcal nuclease cutting linker DNA between nucleosomes. 38. Answers and diagrams should include: • If replication was continuous in a 5′ to 3′ direction, the two DNA strands would not be antiparallel and would instead be parallel to each other. • If continuous replication was able to occur in both 5′ to 3′ and 3′ to 5′ directions, then primase, RNA primers, Okazaki fragments, and DNA ligase would not be necessary for synthesis on the lagging strand. Additionally, telomeres would not be necessary since there would be complete synthesis of the lagging strand of eukaryotic DNA. 39. The weak hydrogen bonds in DNA break easily, making it easier for the two strands in the molecule to separate during replication. The strong covalent bonds ensure that the sequence of nucleotides remains fixed in each strand. 45. Primase would no longer be needed to synthesize a RNA primer on the lagging strand, since a 3′ hydroxyl end would already exist. Ligase would not be necessary since Okazaki fragments would not be synthesized on the lagging strand. 46. Concept maps should include information on two or more experiments that addressed a similar hypothesis (i.e., the transforming principle experiments performed by Griffith and Avery). The experimental approaches and results for each experiment should be outlined in the concept map, in addition to how the different experiments are related to one another (i.e., did the result from one experiment help direct subsequent experiments?). Using a variety of experimental approaches provides confidence and confirmation of results. 47. Timelines should be a chronological order of contributions from the scientists presented in the chapter: Miescher; Levene; Griffith; Avery, MacLeod, and McCarty; Hershey and Chase; Chargaff; Pauling; Franklin; Watson and Crick. 48. Sample diagram: 32 40. Radioactive phosphorus ( P) would label newlysynthesized DNA strands. Diagrams should resemble the semi-conservative model of replication shown in Figure 5.15 on page 220 of the student textbook, where the 32P-labelled strands would correspond to the newly synthesized daughter strands. After two rounds of replication, both strands of new DNA double helix should incorporate 32P. 41. 5′-UGACU-3′ 42. DNA polymerases are expected to be more active in continuously dividing skin cells, since DNA replication would occur more often. Heart muscle cells do not divide as frequently as skin cells, and therefore DNA replication (and DNA polymerase activity) occurs less often. 43. Answers could include targeting bacterial-specific topoisomerases. These enzymes are essential for supercoiling and DNA replication, which are both required for the survival of bacterial cells. Since this is a bacteria-specific target, the side effects of this drug on eukaryotic cells could be reduced. 44. A defect in DNA helicase could result in delayed unwinding of the DNA double helix. Therefore, the initiation of DNA replication would not occur efficiently, which could lead to DNA instability and cell death. 8 MHR TR • Biology 12 Answer Key Unit 3 P S P S P S P S P S S 3 end P 5 end G G A C T A hydrogen bonding C P 5 end S C P S T P S G P S A P S T P S 3 end 49. Graphic organizers should include: • Prokaryotes Only—rate of replication is faster compared to eukaryotes; five DNA polymerases have been identified in prokaryotes; circular chromosome of prokaryotes have a single replication origin. • Prokaryotes and Eukaryotes—require replication origins; have 5′-3′ elongation; have continuous synthesis on the leading strand, and discontinuous synthesis on the lagging strand; require a primer for Okazaki fragments on the lagging strand; require the use of DNA polymerase enzymes • Eukaryotes Only—rate of replication is slower compared to prokaryotes due to complicated enzymes complexes and proofreading mechanisms; 13 DNA polymerase enzymes have been identified in eukaryotes; linear chromosome has multiple replication origins; presence of telomeres due to linear nature of eukaryotic chromosome 50. Diagrams should resemble the bottom illustration in Figure 5.16 on page 221 of the student textbook, with the first set of parental and new strands labelled first round, and the next set labelled second round. 51. Flowcharts should include: • Initiation—Helicase enzymes unwind the DNA double helix to separate it into two strands. A replication bubble and replication forks are formed when single-strand binding proteins stabilize the separated strands. Topoisomerase enzymes help to relieve the strain on DNA caused by unwinding. • Elongation—New DNA strands are synthesized by joining free nucleotides together. This is catalyzed by DNA polymerase, which synthesizes the new strands that are complementary to the parental strand. Synthesis of the new DNA strands occurs continuously on the leading strand, and discontinuously on the lagging strand. • Termination—The two new DNA molecules, each composed of one parental strand and one new daughter strand, separate from one another. 52. Diagrams should resemble Figure 5.17 on page 223 of the student textbook, with labels for replication bubble, replication forks (each end of the bubble), and the double-headed arrow showing the direction(s) of unwinding. 53. DNA can only be synthesized in the 5′ to 3′ direction. Diagram should therefore illustrate continuous DNA synthesis on the leading strand and discontinuous DNA synthesis on the lagging strand. Diagram may resemble a simplified version of Figure 5.19 on page 224 of the student textbook with labels for leading strand, lagging strand, Okazaki fragments, RNA primer, DNA polymerase, DNA ligase, parent DNA, and directionality of strands. 54. See Table below. 55. Journal entries should be written in the first person and summarize the knowledge of heredity related to his or her research, using scientific terminology. Challenges could include a lack of research facilities, lack of financial support, the shortcomings of the current technology, lack of consensus among research colleagues, or lack of support for the work in the broader scientific community. Thoughts of future significance of the research may reflect later discoveries. 56. Articles should summarize Watson and Crick’s findings, including their model of DNA and include how this discovery would affect the general public (i.e., advances in medicine and genetics, ethical issues and concerns). The article should be written in language that is aimed at the general public and is appropriate for the time period. 57. Concept maps should illustrate the different levels of organization of eukaryotic DNA. Answers may resemble Figure 5.12 on student textbook page 216, with the addition of a nucleotide label above the DNA molecule, nucleosome at the structure illustrating DNA wrapped around histones, and chromatin on all of the non-condensed forms of genetic material. Question 54 Enzyme Function Absence of Enzyme Helicase Unwinds the double stranded DNA at the replication fork. Other enzymes (below) cannot bind to the DNA because the DNA would remain double-stranded. Topoisomerase II Relieves strain on DNA that is generated from unwinding of the double helix. Unwinding may not occur efficiently. Primase Synthesizes an RNA primer used to generate Okazaki fragments. The DNA strands would be open, but synthesis could not begin because DNA polymerase has to have an existing chain with a 3′ end to add new nucleotides. DNA polymerase I, II, and III A group of enzymes that: • Adds new nucleotides to the 3′ end of a growing chain. • Proofreads the newly formed base pairs and cleaves out any nucleotides that do not fit. • Removes ribonucleotides at the 5′ end (removes the RNA primer). Only primer strands would exist on the opened DNA strands. No new DNA would be synthesized. DNA ligase Joins Okazaki fragments together on the lagging strand. The leading strand would be normal. However, the Okazaki fragments making up the lagging strand would never be joined, and therefore the new DNA would never be complete and functional. Biology 12 Answer Key Unit 3 • MHR TR 9 58. This would leave replication errors (i.e., mispairing of bases) uncorrected. These errors would then become mutations in the genome, which are then passed onto daughter cells once cell division occurs. 59. The graphic organizer should effectively represent the points outlined in the Chapter 5 summary on page 234 of the student textbook. 60. Answers may include: • Human disease—Many genes that are implicated in human disease have parallel versions in model organisms (i.e., yeast, mice, fruit flies), where they can be studied easily in various experimental settings. • Gene function—Studying parallel human genes in model organisms may also provide insight into gene function. • Evolutionary biology—Comparative genomics also allows researchers to study which regions of a genome have been conserved amongst different species. These conserved regions are thought to be essential and important regions of the genome. Likewise, divergent regions may confer speciesspecific function and contribute to morphological and functional changes. 61. Answers should include specific examples of how the chosen scientist’s research would benefit the scientific research community and the general public. Social, legal, and ethical implications may be addressed. The paragraph should be convincing, as this is an example of writing that would be included in a grant application. 62. a. When the last RNA primer from the lagging strand is degraded in linear DNA, the gap that remains is unable to be filled since there is no adjacent fragment where nucleotides can be added. Therefore, the new DNA molecule will be shorter than the parent DNA molecule. Since telomeres are at the ends of eukaryotic chromosomes, they are the sequences which become shorter after each round of replication. b. Telomerase is an enzyme that synthesizes telomeres and replaces sequences that have been lost. In childhood, telomerase activity in cells is high. As people age, the activity of telomerase decreases, which can result in shorter telomeres and therefore shorter chromosomes. This may lead to loss of important coding information. Certain lifestyle factors may influence telomere length based on its effects on telomerase activity. For example, smoking may cause accelerated symptoms of aging due to 10 MHR TR • Biology 12 Answer Key Unit 3 decreasing telomerase activity. Exercise, on the other hand, may delay the symptoms of aging since it increases telomerase activity. 63. Answers may include: • If there was a method to increase telomerase activity, who would have access to “fountain of youth” technology? • Should we be interfering with the natural aging process? • Why would certain individuals want to delay aging? • What are the possible benefits and risks of being able to delay aging? 64. a. Telomerase activity may be higher in cancer cells since these cells divide rapidly. b. Telomerase is present and active in normal cells. Inhibiting telomerase activity as a potential cancer therapy could therefore cause damage to normal cells (i.e., shortened or lack of telomeres, which would lead to more rapid shortening of chromosomes). 65. a. Students’ opinions should be supported with examples. b. Issues may addressed include: • How would appropriate credit be determined? • Should contributions be based on the percentage of work performed for the study or for the analysis? • Should primary credit go to the scientist who proposed the hypothesis, or should it go to the scientist who actually carried out the experiment (i.e., did the “bench work”)? 66. Answers may be based on cultural, religious, or family values. Accept any reasoned argument. 67. Answers may include: • DNA sequencing • Genetic screening for diseases • Therapeutic gene targets • Gene expression (RNA and protein) • DNA mutations 68. This required a rethinking of many ideas that formed the basis of other ideas. The lower number of genes may mean that • the structures function differently than anticipated • the number of number genes does not determine an organism’s complexity • there are a large number and sizes of introns • non-coding regions act as regulatory sequences • genes work in combinations (groups) to perform diverse function 69. In Linus Pauling’s model, DNA replication would have to occur without nitrogen base pairing. Accept any well-reasoned answer. 70. Anti-viral drugs specifically target viral DNA polymerase to interfere with viral replication. Specificity is also required to ensure eukaryotic DNA polymerase activity in not adversely affected. 71. a. Because of the shared features/structure of their DNA. b. Graphic organizers (such as a table) should include the advantages and disadvantages of using the chosen organism and specific examples of significant research findings that were obtained using that organism. c. Ethical issues will vary but may include the harm done to the animal either by being kept in captivity or by the experimental process. 72. a. Mispairing of bases. Thymine should be paired with adenine, and cytosine should be paired with guanine. b. Mispairing of bases occurs during replication and may be due to flexibility in the structure of DNA. c. Mismatch repair can correct this error. A group of mismatch repair enzymes recognizes deformities that are caused by mispairing of bases. These enzymes then excise the incorrect nucleotide and insert the correct nucleotide. DNA polymerases can also correct this error by excising the incorrect nucleotide in a newly synthesized strand, and adding the correctly paired nucleotide. Answers to Chapter 5 Self-Assessment Questions (Student textbook pages 240–1) 1. b 2. c 3. e 4. c 5. a 6. e 7. c 8. a 9. e 10. b 11. C = 19%, G = 19%, T = 31% 12. a. Two different radioactive isotopes were used to trace each type of molecule. One sample of T2 virus was tagged with radioactive phosphorus (32P), since phosphorus is present in DNA but not in protein. The other sample of T2 virus was tagged with radioactive sulfur (35S), since sulfur is only found in the protein coat of the capsid. b. In one experiment, Hershey and Chase observed that most of the radioactively labelled viral DNA was in bacteria and not in the liquid medium. In a second experiment, they observed that the radioactively labelled viral capsid protein was in the liquid medium and not in the bacteria. These results demonstrated that viral DNA, not viral protein, enters the bacterial cell. Therefore, DNA is the hereditary material. 13. Franklin’s X-ray diffraction images showed that DNA has a helical structure with two regularly repeating patterns. She also concluded that the nitrogenous bases were located on the inside of the helical structure, and the sugar-phosphate backbone was located on the outside, facing toward the watery nucleus of the cell. 14. Diagrams should include labels for sugar-phosphate molecules (“handrails”), nucleotide base pairing (“rungs”), and directionality of both strands and resemble the close up part of Figure 5.7 on page 213 of the student textbook. 15. Prokaryotic DNA is double-stranded, circular, and packed in the nucleoid. It is compacted via supercoiling. Linear eukaryotic DNA is compacted in the nucleus through different levels of organization. DNA associates with histones to form nucleosomes. It can be further compacted by the coiling of nucleosomes to produce 30 nm fibres. Additional compacting is achieved through the formation of loop domains of the 30 nm fibre on a protein scaffold. This scaffold can condense further through folding. The differences are due to structure (circular prokaryotic DNA versus linear eukaryotic DNA) and size. Since the total amount of DNA in eukaryotes is much greater than in prokaryotes, they have greater compacting and levels of organization. 16. Answers should include support for the student’s interpretation of the statement. While protein-coding regions include genes which code for proteins, the noncoding regions have regulatory sequences which can influence and regulate the production of proteins and RNA molecules. 17. a. Answers could include identity theft or the identification of an individual’s traits (e.g., disease) without consent (such as for job or insurance screening purposes). Biology 12 Answer Key Unit 3 • MHR TR 11 b. Answers could include forensics, comparative genomics, screening for diseases, or tracing the origin or source of an illness. c. Opinions should be supported with an explanation that includes evidence of scientific understanding of the nature of a DNA sequence. Answers may also consider consent under certain circumstances (i.e., genetic screening for disease or identifying lineage). 18. a. Arrow should indicate movement to the left. b. Okazaki fragment C was made first. Primase synthesizes an RNA primer, which binds to the parental strand of DNA. DNA polymerase III adds new nucleotides to the free 3′-hydroxyl end of the primer. This newly synthesized fragment is an Okazaki fragment. c. Okazaki fragments are necessary for the discontinuous synthesis of the lagging strand during DNA replication. Once the Okazaki fragments are made, DNA polymerase I removes the RNA primer and the Okazaki fragments are joined together by DNA ligase to form a complete lagging strand. 19. DNA has weak hydrogen bonds, which exist between the nucleotides on opposite strands. These weak hydrogen bonds break easily, making it easier for the two strands to separate during replication. The strong covalent bonds that exist on the sugar-phosphate backbone ensure that the sequence of nucleotides remains fixed in each strand, since these bonds are not easily broken. 20. Diagrams should resemble Figure 5.17 on page 223 of the student textbook, with labels identifying the replication bubble, replication forks at each end of the bubble, and the double-headed arrow showing the direction of unwinding. 21. Answers should include the information summarized in Table 5.2 on page 224 of the student textbook, which lists the important proteins involved in DNA replication and their functions (helicase, primase, single-strand-binding protein, topoisomerase II, DNA polymerase I, II, and III, and DNA ligase). 22. A person without DNA polymerase would not exist, because DNA replication could not occur and cells would not be able to divide and survive. 23. Mutations in Mut genes could lead to an inability to correct errors in replication, such as mispairing of bases. Uncorrected errors become mutations in the genome, which are then passed on to daughter cells once cell division occurs. 12 MHR TR • Biology 12 Answer Key Unit 3 24. Telomerase activity decreases as we get older, which results in the shortening of telomeres in somatic cells. This means that the age of an organism is reflected in the length of telomeres. 25. Venn diagrams should include: • Prokaryotes Only—rate of replication is faster; five DNA polymerases identified; circular chromosome of prokaryotes have a single replication origin • Prokayotes and Eukaryotes—require replication origins; have 5′-3′ elongation; have continuous synthesis on the leading strand, and discontinuous synthesis on the lagging strand; require a primer for Okazaki fragments on the lagging strand; require the use of DNA polymerase enzymes • Eukaryotes Only—rate of replication is slower due to complicated enzymes complexes and proofreading mechanisms; 13 DNA polymerase enzymes identified; linear chromosome has multiple replication origins; presence of telomeres due to linear nature of eukaryotic chromosome Chapter 6 Gene Expression Answers to Learning Check Questions (Student textbook page 246) 1. The black urine phenotype shown to be caused by a recessive inheritance factor (gene) that caused that production of a defective enzyme (protein). 2. Answers could use Figure 6.1 on page 245 of the student textbook as a guideline. The results of the Beadle and Tatum experiment showed that a single gene produces one enzyme (one-gene/one-enzyme hypothesis). This was later modified to the one-gene/one-polypeptide hypothesis since not all proteins are enzymes. 3. RNA is found in the nucleus and cytoplasm; the concentration of RNA in the cytoplasm is correlated with protein production; RNA is synthesized in the nucleus and transported to the cytoplasm. 4. Jacob and colleagues saw that bacteria infected with a virus had a newly synthesized virus-specific RNA molecule. This RNA molecule associated with bacterial ribosomes, which are the sites of protein production. Therefore, the RNA molecule carried the genetic information for the production of a viral protein. 5. Having DNA continually transport itself could increase the likelihood of damage to the DNA. Multiple steps in gene expression provide many opportunities for regulation. This allows the cell to have increased control over protein synthesis. 6. 5′-GAUUAACGG-3′ (Student textbook page 254) 7. Answers could include: DNA is the genetic material that controls protein synthesis, whereas RNA helps DNA and is involved in protein synthesis. DNA has the sugar called deoxyribose whereas RNA has ribose sugar. The bases in DNA are adenine, guanine, thymine, and cytosine; the bases in RNA include adenine, guanine, cytosine, and uracil. DNA is a double-stranded helix, and RNA is single stranded without a helix. 8. Answers could include information in Table 6.3 on page 252 of the student textbook: mRNA is the template for translation, while tRNA and rRNA are involved in the translation of mRNA. 9. Initiation—Transcriptional machinery is assembled on the sense strand. RNA polymerase binds to the promoter region of the sense strand. Elongation—RNA polymerase synthesizes a strand of mRNA that is complementary to the sense strand of DNA. Termination—RNA polymerase detaches from the DNA strand when it reaches a stop signal. The mRNA strand is release and the DNA double helix re-forms. 10. To the cytoplasm, for translation 11. During the elongation phase of transcription, a second RNA polymerase complex can bind to the promoter region immediately after the previous RNA polymerase complex starts moving along the DNA. Therefore, multiple strands of mRNA can be synthesized from one gene at a time. This is advantageous for the cell since having more mRNA leads to more protein that can be produced in a given amount of time. 12. Errors in transcription would be less damaging than errors in DNA replication. An error in transcription would results in an error in one protein molecule, while an unrepaired error in DNA replication would cause a change in the genetic makeup of an organism. (Student textbook page 260) 13. Answers may be based on Table 6.4 on page 257 of the student textbook and should include: • mRNA—contains genetic information which determines a protein’s amino acid sequence • tRNA—a molecule that links mRNA codons with their corresponding amino acid • ribosomes—a structure composed of rRNA and proteins which provides the site for protein synthesis • translation factors—accessory proteins which are necessary for each stage of translation 14. A polyribosome is a complex composed of multiple ribosomes along a strand of mRNA. It can produce many copies of a protein at the same time. 15. Translation consumes large amounts of energy since many molecules (i.e., proteins and nuclei acid components) must be synthesized and assembled. Energy is also needed to form peptide bonds that exist between the amino acids in proteins. This energy is provided by mitochondria, which supply the cell with most of its energy. 16. Translation is initiated when initiation factors assemble the translation components. The small ribosomal subunit attaches to the mRNA near the start codon (AUG). The initiator tRNA (with anticodon UAC) binds to the start codon. The large ribosomal subunit then joins to form the complete ribosome. Translation is terminated when a stop codon on the mRNA is reached. This causes the polypeptide and the translation machinery to separate. The polypeptide is then cleaved from the last tRNA by a release factor. 17. Answers could be based on Figure 6.14 on page 259 of the student textbook. 18. The antibiotic would prevent the initiation of translation of bacterial proteins. Therefore, the bacterial cells would not survive. (Student textbook page 265) 19. Mutations that occur in reproductive cells can be passed on to future generations. Mutations which occur in somatic cells do not get passed on from one generation to another. 20. No, since the deletion of nucleotides is divisible by three. 21. A silent mutation has no effect on the amino acids of a protein, and therefore would be the least harmful to an organism. Missense mutations cause alterations in the amino acids of a protein, and nonsense mutations results in a shortened protein due to a premature stop codon. 22. Single-gene mutations involve changes to the nucleotide sequence of one gene. Chromosomal mutations involve changes in chromosomes, and therefore may affect many genes. 23. Spontaneous mutations may arise during DNA replication if there is incorrect base pairing by DNA polymerase. DNA transposition can also cause mutations by the movement of specific DNA sequences (transposons or “jumping genes”) moving within and between chromosomes. Biology 12 Answer Key Unit 3 • MHR TR 13 24. UV radiation can lead to a mutation by covalently linking thymines to form a thymine dimer. A specific mechanism for repairing thymine dimers is photorepair, where an enzyme specifically recognizes and cleaves thymine dimers. A non-specific mechanism for repairing UV damage is excision repair, where a group of excision repair enzymes identify and correct many different types of DNA damage. (Student textbook page 269) 25. Constitutive genes code for proteins that needed for cell survival. Therefore, they are always active and are expressed at constant levels. 26. The regulation of genes allows for cell specialization. Gene expression is controlled so that only certain genes are active at certain levels and at certain times in each cell type. Therefore, each cell type can have its own set of proteins. 27. Many genes in bacteria are clustered together in operons and are therefore under transcriptional control of a single promoter. This type of transcriptional control is energy efficient since these genes are transcribed together into a single polycistronic mRNA, rather than individual mRNA molecules. Individual proteins are then synthesized from the polycistronic mRNA. 28. Answer could be based on Figure 6.23 on page 267 of the student textbook. Diagram should include the regulatory region, promoter region, operator, and the coding region. 29. The lac operon is inducible since the transcription of genes is induced when lactose is present. In the trp operon, the genes are actively transcribed until a repressor binds to inhibit transcription. 30. A common analogy used is the regulation of temperature by a thermostat, since the feedback mechanism is similar (i.e., at low temperatures, the thermostat turns on to increase the temperature; at high temperatures, the thermostat turns off to decrease the temperature). Answers to Caption Questions Figure 6.1 (Student textbook page 245): Growth would occur after each addition of intermediates since glutamate is the first step of the arginine pathway. Figure 6.3 (Student textbook page 249): The drugs will also inhibit translation, since it follows transcription. Figure 6.8 (Student textbook page 253): The increasing length of the mRNA strands indicates the direction of transcription. 14 MHR TR • Biology 12 Answer Key Unit 3 Figure 6.11 (Student textbook page 257): The genes that code for tRNA produce tRNA molecules, which are not translated into proteins. Figure 6.16 (Student textbook page 261): Cysteine Figure 6.18 (Student textbook page 263): A silent mutation occurs when a nucleotide substitution has no effect on the polypeptide sequence (i.e., ACU to ACC) Figure 6.24 (Student textbook page 268): Both operons have the same basic structure. The lac operon is inactive unless lactose is present. The trp operon is normally active, but becomes inactive if enough tryptophan is made. Answers to Section 6.1 Review Questions (Student textbook page 250) 1. While Garrod’s findings suggested a link between genes and proteins, it was Beadle and Tatum who found experimental evidence of the relationship between genes and proteins. 2. a. The arg mutants would be able to grow since all the required amino acids for growth are provided in the medium. b. It would be impossible to determine what enzyme in the arginine pathway is affected by each mutation since all of the mutants would be able to grow on the complete medium (i.e., the medium that is supplemented with all the required amino acids for growth). Therefore, these results would not be able to show that one gene codes for one enzyme. 3. Questions may include: • Why was the one-gene/one-enzyme hypothesis updated to the one-gene/one-polypeptide hypothesis? • Is the one-gene/one-polypeptide hypothesis an accurate description of gene expression? Explain your answer. • If you could update the one-gene/one-polypeptide hypothesis, what changes would you make? Explain your answer. 4. Jacob and colleagues showed that messenger RNA (mRNA) acts as a “genetic messenger.” mRNA is synthesized from the DNA of genes and carries information to produce a protein. 5. The triplet hypothesis proposes that the genetic code consists of a combination of three nucleotides (codon). 6. a. Answers may resemble Figure 6.2 on page 247 of the student textbook, showing experimental set-up and results. b. Crick and Brenner showed that the genetic code is read continuously in triplets, with no spaces in the code. 7. Answers should include an explanation of why the suggested genetic code system could be used. Genetic codes should be able to code for 20 different amino acids, with some duplication. For example, a genetic code of four nucleotides per codon could result in a maximum of 44 or 256 amino acids. This allows for the 20 different amino acids, with some duplication. 8. • A redundant genetic code means that more than one codon can code for the same amino acid. • A continuous genetic code means that the code reads as a continuous series of three-letter codons without spaces, punctuation, or overlap. • A universal genetic code means that almost all living things use the same genetic code to build proteins. 9. Because the start codon AUG also codes for methionine. 10. Stop codons, also known as terminator codons, signal the end of polypeptide growth. 11. Answers should indicate that the genetic code is redundant—that is, more than one codon can code for the same amino acid. Only three codons do not code for any amino acid. The redundancy in the genetic code is extremely valuable to the organism. For example, if a mutation occurs to the DNA, causing an AAT sequence to become AAC, the mRNA codon transcribed by the original DNA is UUA while the mutated DNA transcribes a UUG codon. The mutation, however, will not harm the organism because these two codons both correspond to leucine. 12. a. The central dogma of genetics. b. Genetic information flows from DNA to RNA to protein. 13. Almost all living organisms have the same genetic code. Everyone has his or her own unique set of nucleotides (and therefore DNA bases). 14. Amino acid sequence: arg-iso-val-ser-leu Key: arg = arginine; iso = isoleucine; val = valine; ser = serine; leu = leucine 15. a. The universality of the genetic code refers to the discovery that the same genetic code is used by all living things. This indicates that all living things share similar ancestry. For example, a codon in a fruit fly codes for the same amino acid in humans. b. The universality of the genetic code has significant implications for molecular biology techniques, such as cloning. For example, a gene from one organism can be inserted into a different organism to produce the same protein. Answers to Section 6.2 Review Questions (Student textbook page 256) 1. Each type of RNA has a different function in the cell. Some RNA are involved in translation (e.g., tRNA, rRNA), while others act as part of an enzyme (e.g., RNA in RNAses). Answers may refer to examples in Table 6.3 on page 252 of the student textbook, which lists the different types of RNA molecules and their functions. 2. Flowcharts should include: • Initiation—Transcriptional machinery is assembled on the sense strand. RNA polymerase binds to the promoter region of the sense strand. • Elongation—RNA polymerase synthesizes a strand of mRNA that is complementary to the sense strand of DNA. • Termination—RNA polymerase detaches from the DNA strand when it reaches a stop signal. The mRNA strand is release and the DNA double helix re-forms. 3. The objective of transcription is to produce an accurate copy of a small section of genomic DNA in the form of mRNA. The objective of DNA replication is to produce two identical DNA molecules from a parent DNA molecule. While they have defined stages, different proteins are used in transcription (e.g., RNA polymerase instead of DNA polymerase). 4. For each gene, only one strand of the DNA molecule is transcribed. The sense strand is also known as the coding strand—the strand that is transcribed. The antisense strand is also known as the non-coding strand—it is not transcribed. 5. A promoter region is a sequence of nucleotides on DNA where RNA polymerase complex binds. These regions are important for transcription because RNA polymerase must bind to them for transcription to be initiated. 6. Venn diagrams should include: • DNA polymerase Only—synthesizes two new strands of DNA from template DNA; has proofreading abilities • DNA and RNA polymerase—work in a 5′-3′ direction; add new nucleotides to the 3′-hydroxyl group of the previous nucleotide • RNA polymerase Only—synthesizes new strand of RNA; transcribes only one strand of template DNA; catalyzing synthesis of RNA rapidly because it has no proofreading abilities Biology 12 Answer Key Unit 3 • MHR TR 15 7. a. 5′-TATGATCAC-3′ b. sense strand c. 5′-UAUGAUCAC-3′ d. tyrosine-aspartate-histidine 8. Sample answer: Because DNA is double stranded, DNA polymerase is able to recognize whether hydrogen bonding is taking place between a base in the newly synthesized strand of DNA and its complement in the original strand. The absence of hydrogen bonding indicates a mismatch between bases, and DNA polymerase excises the incorrect base and inserts the correct one. This proofreading ability reduces the incidence of mutation in the genetic code and the possible translation of a non-functional protein. 9. Protein synthesis cannot occur at the same time as transcription since eukaryotic mRNA must undergo modification before it can be transported from the nucleus to the cytoplasm. 10. a. 5′ cap, Exon, Exon, Exon, AAA, 3′ b. 5′ cap—a modified G nucleotide covalently links to the 5′ end; recognized by protein synthesis machinery Splicing—introns removed and exons are joined together poly-A tail—a series of A nucleotides covalently linked to the 3′ end; makes mRNA more stable 11. The discrepancy in the number of genes and the number of proteins in the human proteins may be explained by alternative splicing, where one gene can code for more than one protein. Answers should include a diagram illustrating alternative splicing in eukaryotic genes. 12. Alternative splicing allows for one gene to code for more than one protein. For some genes, all exons are spliced together. In certain cases, only certain exons are spliced together to form mature mRNA. 13. a. The presence of introns allows a gene to produce multiple transcripts by alternative splicing. In some cases introns also contain regulatory sequences to control gene expression. b. In prokaryotes, transcription and translation can occur at the same time since no post-transcriptional modifications (such as removal of introns) are needed. 16 MHR TR • Biology 12 Answer Key Unit 3 Answers to Section 6.3 Review Questions (Student textbook page 266) 1. See Table 6.4 on page 257 of the student textbook. 2. Diagrams should resemble Figure 6.11A on page 257 of the student textbook. Sample caption: Transfer RNA (tRNA) is a molecule that links codons on mRNA to the corresponding amino acid during protein synthesis. Each tRNA molecule contains an anticodon loop, which has complementary base pairs to a specific mRNA codon, and an acceptor step, which has the corresponding amino acid. 3. Codon (mRNA) Anticodon (tRNA) Amino Acid GCC 3′-CGG-5′ alanine UUU 3′-AAA-5′ lysine AAC 3′-UUG-5′ asparagines 4. Ribosomes are the sites of protein synthesis. Each ribosome is composed of two sub-units: a small ribosomal sub-unit and a large ribosomal sub-unit. The small ribosomal sub-unit has a binding site for mRNA, while the large ribosomal sub-unit contains the three binding sites for tRNAs. 5. Translation requires large amounts of energy since many molecules must be synthesized and assembled during this process. Energy is also needed to form peptide bonds that exist between the amino acids in proteins. 6. Answers should resemble Figure 6.14 on page 259 of the student textbook, showing one amino acid being added at a time to the growing polypeptide chain. 7. This mutation will not be passed to future offspring. Mutations in somatic cells, such as skin cells, do not get passed from one generation to another. Only mutations in reproductive cells will get passed to future generations. 8. Single-gene mutations involve changes in the nucleotide sequence of one gene. Chromosomal mutations involve changes in chromosomes, and involve many genes. 9. Transposons would likely cause the most damage if they inserted into coding regions (exons), since this would lead to disruption of protein synthesis. Transposons inserted into non-coding regions (introns) may also cause damage if they disrupt regulatory sequences that control gene expression. 10. Physical mutagens such as X-rays and UV radiation cause mutations by physically changing the structure of DNA. Chemical mutagens such as nitrites, gasoline fumes, and compounds found in cigarette smoke cause mutations by reacting chemically with DNA. 11. Specific repair mechanisms involve a set of proteins that are tailored to fix certain types of DNA damage. Photorepair is a specific repair mechanism that repairs thymine dimers caused by UV radiation. Photolyase enzyme recognizes the damage, binds to the dimer, and then excises the dimer by using visible light. Non-specific repair mechanisms can fix different types of DNA damage. For example, excision repair involves removing a damaged region of DNA and replacing it with the correct sequence. 12. a. GUU-ACC-UGU-UAU-U; frameshift mutation b. valine-threonine-cysteine-tyrosine 13. a. 5′-AUGAAUGAGCAGUUGGAA-3′ methionine-asparagine-glutamate-glutamineleucine-glutamate b. 5′-AUGAAUGAGCAGUAGGAA-3′ methionine-asparagine-glutamate-glutamine c. nonsense mutation 14. a. DNA damage caused by UV radiation is not repaired to due defective photorepair mechanisms. This leads to an accumulation of harmful mutations that could lead to cancer. b. Individuals with XP would need to avoid UV radiation by protecting themselves from sunlight. Answers to Section 6.4 Review Questions (Student textbook page 272) 1. Gene regulation allows for cell specificity. Gene expression is controlled so that only certain genes are active at certain levels and at certain times in each cell type. Therefore, each cell type can be specialized and have its own set of proteins. 2. Constitutive genes include genes that code for proteins that are required at constant levels for cell survival and maintenance. Answers may include genes involved in cell cycle regulation, DNA replication, transcription, and translation. 3. Certain genes may only be required at certain times, such as genes involved in early development. If these genes were always active, they may have unwanted side effects on cells, since they are not needed in later development. 4. a. An operon is a cluster of genes that are grouped together in a region that is under the control of a single promoter. An operator is a DNA sequence to which a protein binds to regulate transcription. b. Activators and repressors alter levels of transcription by interacting with RNA polymerase, transcription factors, and enhancers. The activator enhances the level of transcription, whereas the repressor inhibits the level. 5. Diagrams should resembled Figure 6.23 on page 267 of the student textbook. 6. a. Allolactose binds to the repressor so that the repressor can’t bind to the operator. Therefore, transcription of genes proceeds to produce the required enzymes. b. Lac repressor binds to the operator and prevents RNA polymerase from binding to the promoter, inhibiting transcription of genes. c. Transcription of genes proceeds, but at a slower rate due to lack of activator protein. d. Transcription of genes is inhibited. 7. The lac operon is inducible since the transcription of genes is induced when lactose is present. In the trp operon, the genes are actively transcribed and only become inactive if enough tryptophan is made. This causes the binding of a repressor to inhibit transcription. 8. Gene regulation is more complex in eukaryotes than in prokaryotes. In eukaryotes, gene regulation occurs at five levels: pre-transcriptional, transcription, posttranscription, translational, and post-translational. In eukaryotes, gene regulation occurs at three levels: transcriptional, translational, and post-translational. The most common level of regulation in prokaryotes is at the transcriptional level, where genes are regulated through operons. 9. Constitutive genes would more likely be in less condensed areas since they need to be constantly transcribed. Being in less condensed areas of chromatin allows the transcriptional machinery easier access to DNA. Biology 12 Answer Key Unit 3 • MHR TR 17 10. Level of Gene Regulation Location in the Cell Description Example Pre-transcriptional Nucleus Regulation occurs at the DNA level Alteration of chromatin structure and nucleosome structures Transcriptional Nucleus Regulation is controlled by various proteins during transcription Transcription factors enable the initiation of transcription; activators enhance transcription initiation Post-transcriptional Nucleus Regulation occurs at mRNA level Alternative splicing of mRNA; addition of 5′ cap and 3′ poly-A tail Translational Cytoplasm Regulation occurs during protein synthesis Small RNAs can associate with proteins to inhibit translation Post-translational Cytoplasm Regulation occurs after the protein has been synthesized Protein folding into a three-dimensional structure; ubiquitin tagging of proteins for degradation 11. Activators enhance levels of transcription by binding to transcription factors, RNA polymerase, and enhancers. Regulation of genes can require many different types of activators, which allows for greater control of gene expression. 12. RNA interference could be useful in the development of new therapeutics since they could potentially control the expression of genes implicated in diseases. For example, some diseases are caused by over-production of certain proteins. Using RNA interference to target the mRNA transcript could “turn off ” the production of the protein. This technology has its disadvantages, however, since it is not always desirable to completely stop the production of a certain protein. 13. A pre-mRNA strand which lacks a 3′ poly-A tail will undergo rapid degradation, while lack of a 5′ cap will result in the mRNA not being transported from the nucleus to the cytoplasm. Therefore, the mRNA will not be available for protein synthesis. 14. Mutation in the VHL gene could lead to proteins not being degraded efficiently. Therefore, a build-up of certain proteins may lead to unwanted side effects on cells and lead to disease. 15. C Answers to Chapter 6 Review Questions (Student textbook pages 277–81) 1. b 2. d 3. c 4. a 5. b 6. e 18 MHR TR • Biology 12 Answer Key Unit 3 7. c 8. c 9. d 10. a 11. b 12. a 13. c 14. e 15. Beadle and Tatum’s experiment showed that a single gene produces one enzyme (one-gene/one-enzyme hypothesis). This was later modified to the one-gene/ one-polypeptide hypothesis since it applies to all polypeptides, not just to enzymes. 16. The structure of a protein is determined by the structure of the DNA molecule. The order of the base pairs in a DNA molecule makes up the genetic code of an organism. The genetic code determines how the amino acids are strung together and how the proteins are made. 17. One-nucleotide and two-nucleotide genetic codes could not account for the 20 different amino acids. For example, a one-nucleotide genetic code would only yield 41, or four possible amino acids and a two-nucleotide genetic code would only yield 42, or 16 possible amino acids. The triplet hypothesis allows for 43, or 64 amino acids, which is enough to account for the 20 different amino acids, with some duplication. 18. • A redundant genetic code means that more than one codon can code for the same amino acid. • A continuous genetic code means that the code reads as a continuous series of three-letter codons without spaces, punctuation, or overlap. • A universal genetic code means that almost all living things use the same genetic code to build proteins. 19. The antisense strand is also known as the non-coding strand. It is not transcribed. Its counterpart is the sense strand, the one that is transcribed. That is also known as the coding strand. 20. a. A codon is a specific sequence of three mRNA nucleotides, the nitrogen bases of which code for an amino acid. The mRNA “reads” the genetic information of the DNA, and transfers that information to ribosomes in the cytoplasm, where a corresponding polypeptide is synthesized. b. An anticodon is a specific sequence of three tRNA nucleotides, the nitrogen bases of which complement those on the mRNA. The tRNA carries a specific amino acid to the ribosome and attaches the amino acid to the growing polypeptide chain according to the complementary mRNA codon. c. The ribosome is the site of protein synthesis, and moves along the mRNA chain as each codon is read by a tRNA that carries a specific amino acid to the polypeptide chain. A polyribosome is composed of multiple ribosomes that are attached to a single mRNA. 21. Answers may be based on Table 6.4 on page 257 of the student textbook and should include: • mRNA—contains genetic information which determines a protein’s amino acid sequence • tRNA—a molecule that links mRNA codons with their corresponding amino acid • ribosomes—a structure composed of rRNA and proteins which provides the site for protein synthesis • translation factors—accessory proteins which are necessary for each stage of translation 22. P (peptide)— contains the tRNA with the growing polypeptide chain A (amino acid)—contains the tRNA with the next amino acid to be added to the growing polypeptide chain E (exit) site—the uncharged tRNA (tRNA that is no longer carrying an amino acid) is ejected from this site 23. Sample answer: • In bacteria, operons regulate expression of a cluster of genes whose encoded proteins are involved in the same metabolic pathway. • In eukaryotic cells, transcription factors regulate which genes are transcribed and when in a particular cell type. • Prokaryotes have three levels of gene regulation: transcriptional, translational, and post-translational. Eukaryotes have five levels of gene regulation: pretranscriptional, transcriptional, post-transcriptional, translational, and post-translational. 24. A physical mutagen physically changes the structure of DNA. For example, X-rays tear through DNA molecules, causing random physical changes to DNA structure. A chemical mutagen causes mutations by reacting chemically with DNA. Nitrites are an example found in many cured meats. 25. Specific repair mechanisms involve a set of proteins that specifically repair certain types of DNA damage. Photorepair is a specific repair mechanism that fixes thymine dimers caused by UV radiation. Photolyase enzyme recognizes the damage, binds to the dimer, and then excises the dimer by using visible light. Nonspecific repair mechanisms can fix different types of DNA damage. For example, excision repair involves removing a damaged region of DNA and replacing it with the correct sequence. 26. a. In a eukaryotic cell, transcription occurs in the nucleus and translation occurs in the cytoplasm. In a bacterial cell, the DNA is in the cytoplasm since there is no nucleus. Furthermore, in eukaryotes, newly synthesized mRNA undergoes modification (removal of introns and addition of 5′ cap and 3′ poly-A tail) to produce a mature mRNA before translation can begin. b. The main advantage is that protein synthesis can occur faster because the mRNA does not have to leave the nucleus as it does in a eukaryotic cell. A possible disadvantage is that in bacterial cells, DNA is not protected by a nucleus and the chance of DNA mutation may be increased. 27. Because they perform different functions and have different needs. 28. • Transcription of RNA from DNA (A pairs with U, C pairs with G) • mRNA attachment at AUG to the small ribosomal sub-unit during initiation of translation • mRNA codon and tRNA anticodon pairing during translation • tRNA conformation (intramolecular base pairing) 29. methionine-proline-threonine-threonine 30. If this mRNA came from an eukaryotic source, it is likely a mature mRNA with its introns excised and exons joined together. This would explain why the mRNA has fewer bases compared to its DNA sequence. However, if the source was a prokaryote, then the mRNA is either partially degraded or the incorrect DNA was isolated. Biology 12 Answer Key Unit 3 • MHR TR 19 31. a. Spliceosomes remove introns from pre-mRNA. If all the spliceosomes were removed from the yeast sample, genes would not be correctly expressed since the introns would remain in the mature mRNA. b. The introduction of spliceosomes would most likely not affect gene expression since prokaryotic genes do not have introns. 32. a. serine b. threonine c. valine d. histidine 33. a. CAA, CAG, CAU, CAC b. UAC c. GAA, GAG, GAU, GAC d. AUA, AUG 34. a. Synthesize an RNA molecule that only contains G and A nucleotides for translation. This molecule would then be cultured in a medium to undergo translation. b. Supplement the growth medium with the 20 different amino acids and protein synthesis machinery. c. glycine (GGA, GGG) 35. a. 5′-CATATTCGT-3′ b. 5′-CAUAUUCGU-3′ c. histidine-isoleucine-arginine d. 3′-GUA-5′; 3′-UAA-5′; 3′-GCA-5′ 36. a. If the substitution causes coding of the same amino acid. b. If the substitution causes coding of a different amino acid, resulting in a slightly altered protein. c. If the substitution causes coding of a different amino acid, and the resulting polypeptide is non-functional. 37. a. The wrong protein would be made since the amino acid sequence would not correspond with the mRNA codons. b. A protein would not be produced since initiation of translation is inhibited. c. The protein would not be produced. d. The protein would be incorrectly translated. 38. • Ribosomes are made up of rRNAs as well as proteins. • Initiation factors are proteins responsible for assembling the translational machinery. • Elongation factors are proteins responsible for enabling tRNA anticodons to bind to mRNA codons. • Release factors are proteins responsible for cleaving the polypeptide from the last tRNA during termination. 20 MHR TR • Biology 12 Answer Key Unit 3 39. It is advantageous for the cell to keep its DNA inside the nucleus rather than have it move from the nucleus to the ribosomes in the cytoplasm. This reduces the chances of a mutation (damage) occurring to the DNA during this process. As well, if the DNA stays inside the nucleus, only the gene required to synthesize the protein has to be exposed. Once again, this reduces the chances of the DNA being damaged. Other answers are also possible. For example, the transcription step allows amplification of protein synthesis since mRNA is present in much greater copies in the cytoplasm compared to DNA of a given gene. 40. a. The photorepair mechanism can repair damage to DNA caused by UV light. A photolyase enzyme recognizes the thymine dimers caused by UV light and then uses visible light to repair the dimers. b. DNA repair is an essential mechanism for cells since it ensures that potentially harmful mutations do not accumulate too rapidly. 41. Four: Exon 1, Exon 2, Exon 3, Exon 4; Exon 1, Exon 2, Exon 3; Exon 1, Exon 2, Exon 4; Exon 2, Exon 3, Exon 4 42. Three bases, or a multiple of three, can be added or deleted. This results in the code shifting one or more full frames, which returns the sequence to its original coding. 43. a. X-ray exposure could disrupt the function of critical genes resulting in the activation of DNA damage response in the cell. This will cause production of new polypeptides that will work to repair the damage. b. The newly synthesized polypeptides will persist for a short period of time. After the cell has repaired the damage, it is expected that normal protein synthesis will resume. 44. Transposons which insert themselves in non-coding regions are not necessarily less harmful if the noncoding regions contain regulatory sequences which are involved in the control of gene expression. 45. a. Nutrient X acts as an inducer that is most similar to how lactose acts in the regulation of the lac operon. When there are high levels of lactose, allolactose binds to the repressor so that the repressor can’t bind to the operator. Therefore, transcription of lactose-metabolizing genes in the operon is high. When lactose is not present, the lac repressor binds to the operator and prevents RNA polymerase from binding to the promoter. Therefore, transcription of genes is low. b. Nutrient Y is similar to how tryptophan acts in the regulation of the trp operon. In the trp operon, the genes are actively transcribed until a repressor binds to inhibit transcription. For example, when there are low levels of tryptophan, it must be synthesized. Therefore, the repressor does not bind to the operator, and transcription of tryptophansynthesizing genes is high. When there are high levels of tryptophan, it binds to a repressor which leads to lower transcription levels. 46. Genes that are not constitutive (i.e., genes that are not always expressed and are not needed in constant amounts to ensure cell survival) are most likely to be present in highly condensed areas of chromatin. These genes could be involved in early development, and therefore are only expressed during certain times. 47. Flowcharts should include: • Initiation—Transcriptional machinery is assembled on the sense strand. RNA polymerase binds to the promoter region of the sense strand. • Elongation—RNA polymerase synthesizes a strand of mRNA that is complementary to the sense strand of DNA. • Termination—RNA polymerase detaches from the DNA strand when it reaches a stop signal. The mRNA strand is release and the DNA double helix re-forms. 48. Answers may resemble Table 6.2 on page 251 of the student textbook. Characteristic DNA RNA Base components Adenine, guanine, cytosine, thymine Adenine, guanine, cytosine, uracil Sugar component Deoxyribose Ribose Single or double strand Double strand Single strand 49. a. Sample answer: a “protein factory” • DNA is the blueprint/instruction for making protein • RNA is the messenger that delivers instructions to the protein factory • Protein is the finished product b. Questions may include the difference between DNA and RNA, what protein is (other than a nutrient), why proteins can’t get information directly from DNA, what the information looks like, and how long the process takes. c. Answers should reflect a cursory level of understanding presented in language appropriate to Grade 5. 50. Diagrams of precursor mRNA may resemble 5′, Exon, Intron, Exon, Intron, Exon, 3′, with labels for directionality. Diagrams for mature mRNA may resemble 5′ cap, Exon, Exon, Exon, 3′ poly-A tail, with labels for directionality. 51. DNA provides the genetic information to produce proteins, but it is the proteins themselves which carry out the cell’s functions. Therefore, proteins are often considered to be the functional units of a cell. 52. Diagrams may resemble Figure 6.13 on page 259 of the student textbook and should include labels for A site (amino acid); P site (peptide); E (exit) site; large ribosomal sub-unit; small ribosomal sub-unit; initiator tRNA with anti-codon UAC pairing with mRNA start codon AUG. 53. Answers should resemble the first three rows of Table 6.3 on page 252 of the student textbook and include a summary for rRNA, mRNA, and tRNA. 54. a. Sample answer: Mutations (changes) to DNA are caused by natural copying errors, and by chemicals and radiation. Mutations can be noticeable, harmless, or cause disease. Only mutations in reproductive cells are passed on to children. b.–c. Sample answer: • Introduction—DNA is the code that tells your cells how to behave (like eye cells or stomach cells, for instance). Mutations in DNA simply mean there is a bad copy of the cell, like a bad scan of a document in which the colours are off or the words are garbled. DNA has to be copied to create new cells to replace old, dead cells. • Causes of mutations—Mutations occur naturally when mistakes are made during copying. Some chemicals such as nitrous acid and benzene can cause regions of bad code. Radiation such as X-rays and UV light can change the DNA code too. • Examples of mutations—DNA mutations are responsible for a wide range of disorders such as sickle cell anemia and colour blindness. Some mutations are harmful, and some have no noticeable effect—especially those at appear at the end of a DNA strand. It is possible that a mutation would be beneficial (such as a colour change that aids camouflage), but it’s not likely to give you super powers. Cancer can be caused by mutations that turn off the signal for a cell to die, causing a tumour to grow. • Natural corrections—The process by which DNA is copied involves steps that check and repair the code. The cell has its own surveillance and repair system to ensure that DNA damage is detecting and fixed. Biology 12 Answer Key Unit 3 • MHR TR 21 • Conclusion—Your genetic make-up never changes, but the DNA in some of your cells can change. You can limit the number of mutations your cells must deal with by protecting your body from radiation and some chemicals. Only mutations to your reproductive cells will be passed on to your children. There are tests that can tell you whether you have the gene for a disease, or genes which are associated with an increased risk of a disease. Though you may live symptom free despite having the gene for a disease, such knowledge can give you the incentive to take preventive measures, and may factor in your decision to have children. 55. Flowcharts should include: • pre-transcriptional (in the nucleus) • transcriptional (in the nucleus) • post-transcriptional (in the nucleus) • translational (in the cytoplasm) • post-translational (in the cytoplasm) 56. Accept any justified arguments for or against the strength of the thermostat analogy. Graphic organizers should identify key concepts and relationships relating to the lac operon, such as the roles of: the CAP in enhancing transcription of the operon, the repressor protein in blocking transcription in the absence of lactose, and allolactose in inducing transcription in the presence of lactose. Students should also indicate that the lac operon is like a thermostat in that the operon is turned “off ” until a signal (the presence of lactose, rather than a low temperature) turns it on. The lac operon, however, is not involved in temperature regulation. 57. Graphic organizers should summarize the points given on page 276 of the student textbook. 58. a. Answers should include an introduction to the central dogma and a description of how retroviruses are able to reverse-transcribe their RNA to DNA using reverse transcriptase. This DNA then becomes integrated into the host cell’s genome and undergoes transcription and translation to produce the retroviral protein. b. Diagrams should resemble Figure 6.3 on page 249 of the student textbook, with the addition of an arrow showing reverse transcription from RNA to DNA. 59. a. Answers should clearly state the research question, show evidence of consulting at least two independent sources, with documentation, and show evidence of critical thinking that connects the research with concepts being studied in class. At 22 MHR TR • Biology 12 Answer Key Unit 3 least two or more hurdles should be identified—such as the difficulty in coming up with tRNA molecules or ribosomes that will work with new nucleotides. b. Accept any justified response. Examples include beneficial impacts, such as the use of new nucleotides to build new proteins for medical applications, and drawbacks such as uncertainties about the safety of this form of genetic engineering. 60. Answers should identify the role of DNA as a carrier of information as well as the roles of DNA polymerase, DNA ligase, and other proteins in DNA replication, and the roles of RNA polymerase and the ribosomal proteins in gene expression. Inferences should include that, at one time, RNA molecules might have carried out similar roles. Answers should be supported by one or more specific examples such as that mRNA is a carrier of information and that, through the action of snRNA molecules, mRNA can be cut and rejoined, much as DNA ligase rejoins DNA fragments. 61. a. Diagrams should illustrate the mechanism by which antibiotics on bacterial ribosomes inhibit bacterial protein synthesis. b. Antibiotics specifically target bacterial ribosomal sub-units. c. This specificity ensures that the antibiotics inhibit the production of bacterial proteins (which ultimately lead to death of bacterial cells), and do not affect eukaryotic protein synthesis. 62. Answers should address how to reduce exposure, as well as the potential harms of excessive exposure to these mutagens. Alkylating agents and azides (such as sodium azide in vehicle air bags) are common chemical mutagens. Answers may also discuss formaldehyde, benzene, and nitrous acid. Physical mutagens include electromagnetic radiation (e.g., gamma rays, X rays, UV light). Answers may also address safe exposure levels and government regulations surrounding each mutagen. 63. Answers should address the importance of proofreading in preventing mutations. Accept any reasonable and supported advantages and disadvantages such as: a. Researchers could, for example, find the new form of RNA polymerase useful in experimenting with methods to reduce mutation. Alternatively, the new form of RNA polymerase could perhaps contaminate experiments and interfere with the action of DNA polymerase. b. People could, for example, benefit from cancer prevention techniques that use the new form of RNA polymerase to prevent mutations. On the other hand, the new form of RNA could prevent beneficial mutations from occurring that could allow populations of certain organisms to evolve. 64. a. Nitrites are a fairly inexpensive preservative used in many cured meats. By using nitrites, food manufacturers can produce a product that has a longer shelf-life, which is less expensive than producing nitrite-free foods (which have a shorter shelf-life). Answers may also discuss how foods that are branded “healthier” or “health conscious” are often more expensive. Some consumers are willing to pay this premium. b. Any supported opinion is acceptable. 65. Answers may discuss: • The heavy taxation on cigarette sales, which provide revenue for the government. • The maximum allowable exposure levels of formaldehyde versus the mutagens present in cigarettes. • The once socially acceptable status of smoking, and the evolution of attitudes toward it. • People’s right to make their own health decisions. • Smoking lobbyists that are more successful than the hairspray companies at advocating for the sale of their product. 66. Answers may discuss: • Proteins are often considered to be the functioning units of a cell. While genes provide the instructions to produce proteins, it is the proteins themselves that are responsible for performing numerous functions in the cell. • While the genome of a cell remains relatively static throughout time, its proteome is constantly changing. The levels of proteins in a cell depend on factors such as cellular environment, disease, cell type, and developmental stage. • Many diseases can be traced to defects at the protein level (i.e., protein structure, levels of protein expression). Therefore, many therapeutic drugs are either proteins themselves, or have targets at the protein level. • Since a cell’s proteome is dynamic, research has been focused on identifying protein expression profiles for certain diseases. For example, it has been found that some diseases are correlated with high levels of certain proteins. These proteins can therefore be used as “biomarkers” when screening for disease. 67. Answers may discuss: • Epigenetic information determines how and when genes are accessed and transcribed. • Epigenetic changes are chemical modifications of DNA that alter gene expression but do not change the DNA base sequence. These changes can affect future generations. • Examples of epigenetic changes include modifications to chromatin and histone proteins and methylation of DNA. • An individual’s epigenome can change based on environmental factors. Some environmental factors which have been studied include malnutrition and epigenetic carcinogens (these substances do not damage the DNA itself, but can induce epigenetic changes). • The epigenome provides additional therapeutic targets which can be used for the diagnosis and treatment of disease. Answers to Chapter 6 Self-Assessment Questions (Student textbook pages 282–3) 1. c 2. e 3. a 4. a 5. a 6. c 7. a 8. d 9. c 10. b 11. Beadle and Tatum proposed the one-gene/one-enzyme hypothesis, which states that one gene specifies one enzyme. This hypothesis has since been updated to the one-gene/one-polypeptide hypothesis, since not all proteins are enzymes, and many enzymes are composed of more than one protein. 12. Diagrams may resemble Figure 6.3 on page 249 of the student textbook. 13. The main objective of transcription is to accurately produce mRNA from a section of DNA. The main objective of translation is to synthesize protein from an mRNA template. 14. Tables should include: • Ribosomal RNA (rRNA) is found in the ribosomes, which is where the messenger RNA (mRNA) is read and the amino acids are assembled to form a polypeptide. Biology 12 Answer Key Unit 3 • MHR TR 23 • Messenger RNA (mRNA) transcribes the genes, the sequence of nitrogen bases in a strand of DNA, and carries this “message” from the DNA in the nucleus to the ribosomes in the cytoplasm. • Transfer RNAs (tRNA) in the cytoplasm bond to individual amino acids and take them to the complementary codons of the mRNA at the binding site on the ribosome, where a growing polypeptide chain is built. 15. Once the first RNA polymerase complex moves along the DNA during the elongation phase of transcription, a second RNA polymerase complex can bind to the promoter region and synthesize another mRNA molecule. Therefore, multiple mRNA molecules can by synthesized at one time. 16. After transcription, pre-mRNA undergoes the following modifications: • 5′ cap—A modified G nucleotide is covalently linked to the 5′ end. This modification is recognized by protein synthesis machinery. • Splicing—Introns are removed by spliceosomes and exons are joined together. • poly-A tail—A series of A nucleotides is covalently linked to the 3′ end. This modification makes mRNA more stable. 17. Many mRNA sequences are possible due to the redundancy of the genetic code. For example: 5′-GGU-CUU-GUU-AGA-3′ 5′-GGC-CUC-GUC-AGG-3′ 18. During transcription, DNA serves as a template for mRNA. After transcription, mRNA undergoes modifications so that it can leave the nucleus and provide genetic information to ribosomes for protein synthesis in the cytoplasm. 19. The discrepancy in the number of genes and mRNA transcripts can be attributed to alternative splicing of mRNA. 20. Diagrams should resemble Figure 6.11A on page 257 of the student textbook plus labels for the anticodon serine (AGA, AGG, AGU, AGC, UCA, or UCG) and the amino acid (serine). 21. a. frameshift mutation b. A frameshift mutation causes the reading frame to be altered. The insertion of the G nucleotide has caused the reading frame to be shifted, which leads to a change in the amino acid sequence. 22. a. Reading from left to right—methionine-threoninelysine-glycine-tyrosine. Reading it from right to left—histitide-tryptophan-lysine-threonine-valine. 24 MHR TR • Biology 12 Answer Key Unit 3 The amino acid sequences in the two interpretations are different since they would result in the production of two different proteins. b. The original amino acid sequence is methioninethreonine-lysine-glycine-tyrosine. The mutated amino acid sequence would be methionine-lysinelysine-valine. c. frameshift mutation 23. a. Photorepair is a specific repair mechanism that fixes thymine dimers caused by UV radiation. Photolyase enzyme recognizes the damage, binds to the dimer, and then excises the dimer by using visible light. b. Not all DNA damage can be repaired, and therefore harmful mutations caused by UV radiation can still accumulate. 24. a. high amounts of lactose → allolactose binds to repressor → repressor no longer binds to operator → transcription of genes induced b. no lactose → lac repressor protein binds to operator → RNA polymerase inhibited from binding to promoter → transcription of genes inhibited 25. The regulation of gene expression allows for cell specificity. Gene expression is controlled so that only certain genes are active at certain levels and at certain times in each cell type. For example, there are some genes which are only expressed during certain periods of early development. Unwanted side effects on the cell (and possible developmental abnormalities) may occur if these genes continue to be actively expressed beyond their specified time and level. Chapter 7 Genetic Research and Biotechnology Answers to Learning Check Questions (Student textbook page 291) 1. • Specificity—The cuts made by an endonuclease are specific and predictable. That is, the same enzyme will cut a particular strand of DNA the same way each time, producing an identical set of small DNA fragments called restriction fragments. • Staggered cuts—Most restriction endonucleases produce a staggered cut that leaves a few unpaired nucleotides on a single strand at each end of the restriction fragment. These short strands, often referred to as “sticky ends,” can then form base pairs with other short strands that have complementary strands, creating a recombinant DNA molecule. 2. The construction recombinant DNA molecules require the use of restriction endonucleases. When a gene of interest and a vector have the same restriction endonuclease cutting site, “sticky ends” can be produced when they undergo a restriction endonuclease reaction. The “sticky ends” in the gene of interest can form base pairs with the “sticky ends” of the plasmid to create a recombinant DNA molecule. 3. Gene cloning is a process that produces many identical copies of a gene. Cloning genes is useful for studying gene function and for producing large amounts of mRNA or proteins from a gene for further study. 4. Selectable markers, such as antibiotic resistant genes or lacZ genes, are used to identify and specifically select bacterial colonies which have the recombinant DNA. 5. Answers should be based on Figure 7.6 on page 290 of the student textbook. 6. • Amplification of “ancient DNA” for evolutionary studies. • Screening of genetic defects using a DNA sample from a single cell. • Amplification of DNA from small crime scene samples for further analysis. (Student textbook page 295) 7. DNA fragments are negatively charged. In gel electrophoresis, the negatively charged DNA fragments are attracted to and travel toward the positive terminal. 8. The smaller fragments move more easily through the spaces between the protein molecules of the gel. 9. Gel electrophoresis allows the analysis of DNA fragments based on size. When cloning a gene, the size of the plasmid and the size of the gene are known. Therefore, to check if the gene was successfully cloned into a plasmid, researchers will cut the recombinant DNA with the same restriction endonucleases that were originally used to create the recombinant DNA. This sample is then run on a gel to analyze the size of the resulting fragments. If the fragments correspond to the same sizes of the gene and the plasmid, then cloning was successful. 10. A technology used to identify individuals by analyzing the DNA sequence of certain regions of their genome. 11. Short tandem repeats (STR) are short, repeating sequences of DNA in the genome that vary in length between individuals. In STR profiling, the STRs of an individual are amplified by PCR and analyzed by gel electrophoresis. Since each DNA fragment is fluorescently labelled, a detector can be used to measure the amount of fluorescence emitted from each STR. The resulting printout is a series of peaks that correspond to STRs of varying molecular mass. 12. Any two of: identifying paternity in court, identifying the remains of murder or accident victims, tracing the movement of wildlife, or in plant and animal breeding programs. Accept any ethical issues identified as they may be largely linked to family and cultural values. (Student textbook page 304) 13. The process of specifically altering the genetic material of an organism such as in the production of transgenic bacteria, plants, and animals. 14. • Risks— higher costs and exclusivity, therefore shutting out researchers and other individuals who may wish to study or use a GMO; ethics surrounding ownership of organisms • Benefits—allows researchers to protect their intellectual property, provides financial incentive for development of GMOs, and stimulate further research. 15. Expression vectors have sequences which support transcription and translation of an inserted gene. Therefore, if a gene that codes for a therapeutic protein is inserted into an expression vector, it can be transcribed and translated in bacterial cells in large quantities. The protein can then be purified from the bacteria for medicinal use. 16. Bacteria are easy to use and inexpensive to maintain. Using transgenic bacteria to produce human insulin has also removed some of the allergic side effects that were present when insulin was produced in animal sources. 17. Some bacteria can be genetically modified to improve their ability to break down pollutants, such as pesticides, herbicides, and oil spills that are found in water. 18. Positive—environmental pollutants can be cleaned up; can be designed for the purpose Negative—food supply or habitat of native plants and animals may be diminished; mutations may occur in the transgenic bacteria, which would have unpredictable effects on an ecosystem (Student textbook page 307) 19. Increased tolerance to pesticides, herbicides, disease, and pests; increased yield; a reduced spoilage; reduced pesticide use; cost savings. 20. The biolistic method involves bombarding plant cells with particles coated with DNA. Since the bombardment occurs at a high speed, the DNA can penetrate the plant cells and integrate into the plant genome. Biology 12 Answer Key Unit 3 • MHR TR 25 21. Gene of interest inserted in T DNA of Ti plasmid → recombinant Ti plasmid is transformed into A. tumefaciens → plant cells exposed to A. tumefaciens which transfers and incorporates the T DNA into the plant cell chromosome → plant cells killed by kanamycin and A. tumefaciens killed by carbenicillin → surviving plant cells transferred to growth media with hormones that regenerate an entire plant 22. In horizontal gene transfer, transgenic plants may transfer their introduced traits to other organisms, such as other plants, animals, bacteria, or fungi. In vertical gene transfer, the transgenic plant could transfer its introduced trait into the genomes of the natural or wild version of the same plant. 23. Health Canada requires 7 to 10 years of health and safety research for each new GMO intended for human consumption. This research includes investigating food safety and how the GMO was developed. The main concern surrounding GMOs is the uncertainty surrounding the long-term effects of GMO consumption. 24. Answers may include: insecticides could affect unintended organisms; genes may transfer occur, creating other insecticide secreting organisms; and targeted insects may move to other crops. Answers to Caption Questions Figure 7.1 (Student textbook page 286): AATT Figure 7.3 (Student textbook page 287): Instead of the two different molecules being ligated together to produce one recombinant molecule, each molecule could react with itself by forming base pairs within the same molecule. Therefore, this would produce at least two different molecules. Figure 7.4 (Student textbook page 289): The gene is cloned in the last step, where the host divides to produce many cells. Figure 7.6 (Student textbook page 290): 230 = 1 073 741 824 copies Answers to Section 7.1 Review Questions (Student textbook page 300) 1. A restriction endonuclease can cleave the interior of double stranded DNA. Two features which make restriction endonucleases helpful to genetic engineers are: • Sequence specificity—The cuts made by an endonuclease are specific and predictable. That is, the same enzyme will cut a particular strand of DNA the same way each time, producing an identical set of small DNA fragments called restriction fragments. 26 MHR TR • Biology 12 Answer Key Unit 3 • Staggered cuts—Most restriction endonucleases produce a staggered cut that leaves a few unpaired nucleotides on a single strand at each end of the restriction fragment. These short strands, often referred to as “sticky ends,” can then form base pairs with other short strands that have complementary strands, creating a recombinant DNA molecule. 2. When working with DNA, it is important to ensure that contamination of the sample does not occur. Precautions include wearing gloves, working in a clean workspace, and careful pipetting. 3. Gene cloning involves making many identical copies of a gene. 4. Bacteria are inexpensive, grow very quickly in large amounts, and are easily maintained. 5. Answers should resemble Figure 7.4 on page 289 of the student textbook. 6. • Gene cloning—involves making several identical copies of a gene in foreign cells. It is used to produce enough RNA or protein from the gene of interest for further study. • PCR—is an automated method of making many copies of specific regions of DNA from very small quantities. It does not rely on the formation of recombinant DNA molecules or host systems, which are involved in gene cloning. PCR is used when only a small section of DNA is needed (e.g., purifying a fragment of DNA for analysis or for creating a fragment to be used for cloning), or when a segment of DNA needs to be amplified from very small DNA samples (e.g., crime scene investigations). 7. Denaturation of the double-stranded DNA molecule would not occur if the initial heating step was not carried out. Therefore, amplification of the DNA would not occur. 8. DNA is negatively charged, and therefore moves through the gel toward the positive anode. Small fragments of DNA will migrate the farthest since their size lets them can migrate through the gel more easily. 9. a. Restriction enzymes are added to a sample of DNA from each plant. The enzymes cut the DNA into fragments. Small amounts of the DNA sample are placed into gel electrophoresis wells. An electric charge is attached to the gel, and the DNA segments migrate in the gel according to their lengths. The resulting DNA “fingerprints” are analyzed to determine if segments from the two plants match, indicating whether the plants could be clones. b. Diagrams should show identical bands on the DNA fingerprints of each plant. 10. DNA fingerprinting is a technique that can identify individuals based on analysis of their DNA at certain regions. Applications of DNA fingerprinting include forensic sciences, determining maternity and paternity, identifying genetic links to individuals or across species, identifying genes associated with disease, and creating DNA fingerprint banks. 11. Male 1 is the father of the child. The child’s DNA fingerprint shows more matches with the DNA fingerprint of Male 1 compared to Male 2. 12. The objective of Human Genome Project was to determine the sequence of DNA in the chromosomes of the entire human genome. The Human Genome Project is an important step in understanding how genes determine our genetic characteristics. This understanding can be applied to medical genetics and the treatment of disease, as well as to other sciences. Answers to Section 7.2 Review Questions (Student textbook page 311) 1. This method is not ideal since most diseases involve defects in multiple genes. Gene therapy is a possible therapeutic approach for diseases which are associated with a defect in a single gene. There is concern about the possible negative side effects of altering the human genome with foreign genes. 2. The term transgenic is used to describe an organism that is produced from the introduction of foreign DNA into its genome. A genetically modified organism (GMO) is an organism whose genetic material has been altered, not always with foreign DNA. 3. Benefits—Patents offer incentive in the form of potential monetary compensation, and thus promote innovation in scientific research. Risks—Patents may discourage research collaboration and increase competition. There are also ethical issues surrounding ownership. 4. An expression vector is a plasmid vector that contains sequences which support transcription and translation of the introduced gene. Expression vectors are useful for producing transgenic bacteria which produce foreign proteins. 5. Diagrams should resemble Figure 7.17 on page 303 of the student textbook. Advantages include: • Less expensive to maintain and easier to grow. • Removes side effects associated with insulin purified from animal sources. 6. Bioremediation is the use of micro-organisms to reduce environmental pollutants. • Benefit—bacteria are inexpensive and easy to maintain; avoid chemicals • Risk—transgenic bacteria can also negatively affect the balance of an ecosystem (i.e., effects on the food supply or habitat of native plants and animals). There is also the potential of mutations which may occur in the transgenic bacteria, which could have undesirable side effects on an ecosystem. 7. Biolistic method—Plant cells are bombarded at a high speed with particles coated with DNA; the speeds aids penetration. Ti plasmid method—Ti (tumour-inducing) plasmid is used as a vector for the insertion of a foreign gene into the plant genome. 8. a. Gene pharming involves the use of animals to produce therapeutic proteins. For example, a foreign protein can be made in the mammary cells of a sheep by using a recombinant DNA vector that has a promoter which specifically expresses introduced genes in the mammary cells. The foreign protein therefore is expressed in the mammary cells and is secreted in the sheep’s milk, which will undergo further processing to purify the foreign protein. b. Sample answer: The therapeutic proteins produced have all necessary modifications to function. Additionally, if the proteins are secreted in an animal’s milk, it is easily collected and purified. c. Sample answer: Transgenic animals may breed with non-transgenic animals, resulting in undesired offspring or introduction of the gene in the wider population. The transgenic animals may experience unwanted side effects from producing foreign human proteins. Therapeutic proteins may enter the food supply. d. Answers may include: Is it ethical to use animals as “production factories” for human proteins? Should research look for alternatives to using animals for gene pharming? e. Answers may suggest methods such as broad community consultation, consultation with experts, and educational campaigns to make the issues and options clear. Answers may suggest that the variety of religious and culturally based objections are insurmountable. 9. a. More salmon are produced in a shorter time. b. More nutrients are required in their short growth cycle. Those grown in crowded conditions have a greater risk of contracting and spreading disease to Biology 12 Answer Key Unit 3 • MHR TR 27 other fish—both the transgenic and the wild stocks. They may breed with wild salmon and adversely affect wild salmon stocks or their role in the ecosystem. They may be susceptible to disease. c. Sample answer: Commercial fish-farming operations should have measures in place that prevent diseases from being transmitted to other fish. Commercially grown fish should be contained to prevent escape and breeding with wild fish. 10. a. The keratin protein may not have been modified properly since it is in a bacteria host. Therefore, due to improper modifications, the protein may have quickly degraded. b. Express the recombinant DNA with the keratin gene in human or animal cells (i.e., a non-bacteria host) to see if the protein is properly expressed. c. If the results of the experimental approach described in b are correct, then the recombinant DNA with keratin should be cultured in a human or animal cell host instead of in bacteria. 11. Flow charts should resemble Figure 7.21 on page 309 of the student textbook. 12. Answers may include: • What would be the effects of introducing previously extinct species into new ecosystems? How could this positively or negatively affect an ecosystem? • Would these species survive in presentday environments? • What benefits would result from reviving extinct species? Answers to Chapter 7 Review Questions (Student textbook pages 319–23) 1. c 2. c 3. e 4. e 5. a 6. a 7. c 8. b 9. a 10. a 11. c 12. a 13. b 28 MHR TR • Biology 12 Answer Key Unit 3 14. c 15. The universality of the genetic code means that almost all organisms can make proteins using the same codons. Therefore, a gene that is taken from one type of organism can be inserted into another and will produce the same protein. If the genetic code was not universal, it would be difficult to assess if a recombinant DNA molecule containing DNA from two different organisms would be able to express the proper protein. 16. • Specificity—The cuts made by an endonuclease are specific and predictable. That is, the same enzyme will cut a particular strand of DNA the same way each time, producing an identical set of small DNA fragments called restriction fragments. • Staggered cuts—Most restriction endonucleases produce a staggered cut that leaves a few unpaired nucleotides on a single strand at each end of the restriction fragment. These short strands, often referred to as “sticky ends,” can then form base pairs with other short strands that have complementary strands, creating a recombinant DNA molecule. 17. Certain drugs, such as insulin, were previously purified from natural sources such as animals. This method was very complex, labour-intensive, and expensive. Furthermore, individuals who used the insulin purified from the animal sources often experienced allergic reactions. Using transgenic bacteria to produce human insulin has eliminated the allergic side effects. Producing drugs in transgenic bacteria is also relatively inexpensive since bacteria is easy to maintain and grows quickly. 18. DNA is negatively charged and will therefore migrate through the gel toward the positively-charged anode. 19. STRs are repeating short sequences of DNA that vary in length between individuals. In STR profiling, STRs of an individual are amplified by PCR and then separated by gel electrophoresis. These fragments are fluorescently labelled, which allows a detector to measure the fluorescence emitted from each STR. The DNA fingerprint produced from STR profiling is a unique pattern of peaks which correspond to specific molecular masses (which correspond to the different STR lengths). Each individual has a unique series of these peaks in their STR profile. 20. Dideoxynucleotides lack an –OH group at the 3′ and 2′ carbons on the ribose sugar. A 3′–OH group is needed for synthesis to occur since it is the site that reacts with a new nucleotide. Therefore, DNA synthesis stops when a dideoxynucleotide is incorporated into the growing strand. 21. It increased the amount of DNA that could be read in one sequencing reaction, allowed for multiple reactions to be run at a time, used smaller tubes and smaller gels to increase efficiency, and provided computerized data. 22. Site-directed mutagenesis is a method that allows researchers to specifically alter the nucleotide sequence in a region of DNA. This technique allows researchers to perform mutational analysis to investigate the structure and function of genes and proteins. 23. Genetic engineering is the alteration of the genetic material of an organism—making specific changes to the organism’s sequence of DNA (i.e., site-directed mutagenesis). Biotechnology, however, refers to the application of technologies that involve the use of an organism, or product of an organism, to benefit humans; such as the creation and use of transgenic animals to produce therapeutic human proteins. 24. Creating transgenic animals can be complicated, time-consuming, and expensive. However, creating transgenic bacteria is less complicated, since bacteria grow quickly and are easy and inexpensive to maintain. 25. Answers may include: to produce therapeutic proteins (gene pharming); to create pest-resistant crops (and increase yields); to clean up environmental pollutants (bioremediation). 26. • Biolistic method—Plant cells are bombarded at a high speed with particles coated with DNA; the speeds aids penetration of the DNA which has been selected for pest resistance, which gets integrated into the corn genome. • Ti plasmid method—Ti (tumour-inducing) plasmid is used as a vector for the insertion of the pest-resistance gene into the plant genome. Pestresistance genes are inserted into the Ti plasmid to form recombinant DNA. The recombinant DNA is transformed into a bacterium which then infects the corn cells, resulting in the integration of the pestresistance genes into the corn genome. 27. • Advantages of transgenic animals—Certain therapeutic proteins can undergo necessary modifications for proper functioning in animal cells compared to bacterial cells. • Disadvantages of transgenic animals—Complex and expensive process; safety concerns about products; concerns about effect of human proteins on the health of transgenic animals • Advantages of transgenic bacteria—Less expensive and easier to grow and maintain bacteria compared to animals; can produce therapeutic proteins very quickly due to bacteria growth rate • Disadvantages of transgenic bacteria—Certain therapeutic proteins cannot undergo necessary modifications in bacteria cells 28. a. The donor sheep provided a mammary cell that was extracted and then cultured in a flask. Another sheep provided an unfertilized egg. The mammary cell and the unfertilized egg were then fused together. The resulting embryo was then transferred to the third sheep (the surrogate sheep). b. Dolly was genetically identical to the donor sheep. Therefore, the donor sheep was Dolly’s clone. 29. • Many genes that are implicated in human disease have parallel versions in model organisms such as yeast, mice, and fruit flies, where they can be studied easily in various experimental settings. • Studying parallel human genes in model organisms may also provide insight into gene function. • Comparing genomes also allows researchers to study which regions of a genome have been conserved amongst different species. These conserved regions are thought to be essential and important regions of the genome. 30. The genetic code is nearly universal. Nearly all organisms use the same genetic code to synthesize proteins. Therefore, a human gene (such as ras) can be transcribed and translated in mouse cells, since both humans and mice use the same codons. 31. Two pieces of DNA cut with the same restriction endonuclease can readily join together to form a recombinant DNA molecule since complementary single-stranded sticky ends are produced. 32. a. Diagrams should show the first 4 steps of Figure 7.4 on page 289 of the student textbook, for creating the desired plasmid. Digest both plasmids with a restriction endonuclease enzyme to release gene A and gene B. In the parallel, a new plasmid containing a selectable marker, such as the ampicillin resistance gene, is also digested with the same enzyme. When DNA fragments are mixed together and incubated in the presence of DNA ligase, in some cases gene A and gene B will ligate with the linearized new plasmid leading to the formation of the desired recombinant plasmid. b. Three plasmids, two of which will be the modified parental plasmids lacking gene A and gene B. The new third plasmid will be the recombinant, since it contains both genes. Biology 12 Answer Key Unit 3 • MHR TR 29 33. 215 = 32 768 copies of DNA; 230 = 1 073 741 824 copies of DNA. The amount of DNA doubles with each replication cycle (i.e., one copy of DNA produces two copies after one cycle, four copies after two cycles, eight copies after three cycles, etc.) 34. PCR would be used to increase the amount of ancient DNA. Only a very small amount of template DNA is required for amplification by PCR. 35. 1; 2; || || 2; 4; || || || || 3; 8; || || || || || || || || 36. a. Diagrams should show two distinct bars. The top bar should be labelled 2000 base pairs (vectors) and the bottom bar should be labelled 500 base pairs (gene) b. Diagrams should show one distinct bar labelled 2000 base pairs (vectors only). 37. Diagrams should show a bar where each of the woman’s and man’s showed a bar. 38. • Amplify STRs using primers and PCR • Separated resulting STR fragments on a gel (fluorescently labelled) • Measure fluorescence emitted from each STR fragment. This is recorded as a series of distinct peaks, which represent STRs of differing molecular mass (differing lengths) 39. 5′-GTGAAAAGAG-3′ 40. Premature termination of DNA synthesis. Therefore, only a few (if any) bases would be able to be sequenced. 41. 5′-TCGGATCTTAAC-3′ 42. a. If the gene for stoat coat colour could be isolated with endonuclease, the DNA could be inserted into a dog egg cell, which could then be artificially fertilized and implanted into the uterus of a dog. If the coat colour gene was coded for, the offspring may show stoat coat colour. b. Consideration should be given to the biological characteristics of the transgenic product, compared with the characteristics of the natural variety. Will the dog be healthy and able to breed? Will the dog have adverse behavioural characteristics and how will these be controlled? 43. a. The protein synthesized in bacteria may not have undergone the necessary modifications (i.e., post-translational modifications) needed for its proper function. b. The plant gene could be inserted into a eukaryotic cell rather than a bacterial cell. The eukaryotic cell would have the proper cellular environment to perform the necessary post-translational modifications. 30 MHR TR • Biology 12 Answer Key Unit 3 44. Sample answer: Sticky ends 5 G 3 Blunt ends A AT T C 3 C T TA A G 5 G A T A T C 3 3 C TA TAG 5 5 45. Diagrams should resemble Figure 7.4 on page 289 of the student textbook. 46. Answers should summarize Figure 7.6 on page 290 of the student textbook. 47. Sample answer: a. DNA fingerprinting is a chemical process that makes a map of the genes found in the cells in your body. Or in a plant or another animal. b. Who owns your DNA fingerprint? Why would companies or the government want to collect everyone’s DNA fingerprint? Should everyone have their genes checked for potential to develop diseases? What privacy concerns do you have about someone being able to access and use your DNA fingerprint? c. Procedure, of applications, social and ethical issues, and data management. 48. Essays should describe the micro-organism and how it is used in bioremediation, and advantages and disadvantages of using the micro-organism for bioremediation. 49. Distribute BLM A-33 Communication Rubric to show students how the content of the brochure will be assessed. Brochures should use language and diagrams that are appropriate for the general public. Creative use of colour and design should also be assessed in terms of attractiveness and readability. 50. While answers will be based on students’ beliefs, the answer should clearly define biotechnology in relation to food productivity and security. An opinion agreeing or disagreeing with the statement must be included with an explanation of the concepts of food productivity and security using relevant examples. The author’s conclusion must be clear. 51. Diagrams should resemble Figure 7.17 on page 303 of the student textbook. 52. Benefits— Produce therapeutic proteins for humans; therapeutic proteins produced in transgenic animals have necessary modifications of proteins for proper functioning; therapeutic proteins produced in a transgenic animal’s milk are easy to obtain and purify Risks— Transgenic animals may experience long-term side-effects due to foreign protein production; transgenic animals may enter wild populations, resulting in unknown consequences on other organisms 53. Sample answer in support of human cloning: • may contribute to further understanding of the complexities of gene expression in humans • may provide a reproductive alternative for infertile couples Sample answer against human cloning: • cloned offspring have a high mortality rate, and high incidence of disease • many clones show signs of metabolic disorders, such as premature aging • social/ethical issues such as eugenics and gene discrimination 54. Graphic organizers should include the key concepts and relationships from the Chapter 7 Summary on page 318 of the student textbook. 55. Sample answer: Government regulations do require testing of new products, technology, and procedures before they are approved for the general public. For example, Health Canada and the Federal Drug Administration in the United States regulate the use of new drugs. While this may be an effective way to protect the general public from risks associated with biotechnology, in some instances, personal risk assessment may be a better option. A person who is terminally ill may wish to have a “last resort” treatment, or access to a drug that has not been approved for use. Thus, in some specific cases, government regulations may not serve the individual. 56. Objections could focus on concerns about sampling practices or lab practices relating to the storage and handling of samples, testing and record keeping. Points in support should explain the uniqueness of DNA and the ability to use it to avoid wrongful convictions. 57. a. Answers may take the form of a risk/benefit analysis or may reflect students’ beliefs. Accept any supported answer. b. Answers should indicate an understanding of the ethical impacts of the genetic testing on an individual, a society, and a government. 58. a. Answers should reflect the Canadian government’s most current policies on labelling GMFs. As of 2011, the food labelling standard for genetically engineered foods (GE foods) was the national standard developed in 2004. Labelling of GE foods was voluntary. b. Opinion should be clear and supported by coherent and concrete examples for the statement for or against the policy. 59. a. The significance of the discovery of the herbicide resistant weed depends on the genetic relationship and interaction between the weed and the canola. Will the presence of the weed make it difficult to grow canola? If this is the case, are there other herbicides that are safe to use with canola that are effective against the weed? How did the weed acquire resistance to the herbicide? Could the original research that produced the transgenic canola have predicted the occurrence of the herbicide resistant weed? b. Answers may include: • The farmer worries that the weed will affect the quality and quantity of the canola crop and worries about how to control the weed without using herbicides that will reduce the market value of the canola. • An official from the genetic engineering corporation that created the transgenic canola expresses regrets that this happened. The company will work on a solution that may be years away. The farmer is reimbursed for the cost of the canola seed and potential crop loss. • The owner of a nearby organic farm is concerned about the possible use of herbicides on canola. If the herbicide should drift to his/her neighbouring crops, it may result in the loss of his/her organic crop designation. • A consumer organization opposed to the development of genetically modified organisms wants the public to be informed about the health risks of consuming GMO foods. The organization is concerned that the developers of the transgenic herbicide-resistant canola have not researched the long-term health effects of this product. • A genetics researcher wants a grant from the genetic engineering corporation to study the weed and how it developed resistance to the herbicide. 60. a. Sample answer: Who owns the genetic information? Should companies have the right to sell DNA information to other companies without the permission of the people who provided the samples? Should companies that use DNA in medical research be required to share the results of their work with the individuals, or communities, whose genetic information was used? Where is the boundary between public and private genetic property rights? Biology 12 Answer Key Unit 3 • MHR TR 31 b. Sample answer: Providing genetic information should be voluntary. Genetic information can provide medical benefits to many. Research should be funded so as to maximize benefit for as many as possible. It is reasonable for companies to expect a return on their investment in genetic research. The outcome of the research should be widely available. 61. Answers should describe and address the two scenarios (production of human insulin in bacterial cells to treat diabetes vs mixing animal or plant DNA in agricultural biotechnology). Answers could take into account the historical times (early 1920s vs 2000s) and the level of public knowledge about science and/or trust in science and medicine in general. Answers may also address the idea that while the development of insulin quickly saved lives, the suggested benefits of consuming GM foods may not be realized and the risks are unknown. 62. a. Either yes or no is acceptable. b. Answers should list sources or data that support their position using scientific terms and concepts. 63. Novel foods: • result from a process not previously used for food • do not have a history of safe use as a food • are modified by genetic manipulation or are biotechnology-derived The Novel Foods Regulation (under the Food and Drugs Act) requires that notification be made to the Health Products and Food Branch (HPFB) by any company wanting to sell the product prior to marketing or advertising it. Health Canada conducts a safety assessment of all biotechnology-derived foods to demonstrate that a novel food is safe and nutritious before it is allowed in the Canadian marketplace. 64. a. Answers could include a survey of how other countries have dealt with the issue. Be aware that student research into the Canadian decision may uncover suggestions of controversy within Health Canada. The final decision was made after consultation with an independent panel. b. Answers should state a clear yes or no and be supported by scientific reasoning. Using transgenic pigs as organ donors 65. • an increased amount of DNA that can be read in one sequencing reaction • multiple reactions can be run at a time • all dideoxynucleotides can be put in one tube, since each is dye labelled • smaller reaction tubes and smaller gels increase efficiency • computerized data collection 66. As of 2011, answers should reflect the fact that cloning is governed under the Assisted Human Reproduction Act. According to Health Canada’s web site, “The AHR Act is one of the most comprehensive pieces of legislation in the world concerning reproductive technologies and related research. The legislation has three objectives: it prohibits human cloning and other unacceptable activities; it seeks to protect the health and safety of Canadians who use AHR procedures; and it requires that AHR related research, which may help find treatments for infertility and diseases such as Parkinson’s and Alzheimer’s, takes place in a controlled environment? Students using the relevant Health Canada site should be able to include references to legislation in Australia, France, Germany, Italy, Japan, Singapore, Sweden, United Kingdom, the United Nations, and the United States when they make their comparisons. 67. a. and b. Any one of: DNA fingerprinting/profiling; the Human Genome Project; gene therapy; genetic engineering; genetically modified organisms; bioremediation; or gene pharming. c. Reports should support opinion using relevant scientific concepts and terminology. 68. Sample answer: • Cost—Is it affordable? Should it be covered by OHIP? • Quality and usefulness of information provided—Is it medically useful? Are health care professionals involved? How should an individual interpret data? • Privacy concerns—How do the companies ensure that your information is secure, and not shared or sold? 69. Sample answer: Benefits Risks To individual people • disease treatment • long term use of anti-rejection drugs and side-effects are unknown To society • increased longevity • better quality of life • ethical challenges might arise • possibility of infectious disease transferring from pigs to humans To the economy • fewer health care requirements • individuals remain productive • bearing the cost of potential adverse effects To other species None None To the environment None None 32 MHR TR • Biology 12 Answer Key Unit 3 Answers to Chapter 7 Self-Assessment Questions (Student textbook pages 324–5) 1. a 2. e 3. a 4. b 5. d 6. a 7. a 8. c 9. a 10. d 11. a. The cuts made by an endonuclease are specific and predictable. That is, the same enzyme will cut a particular strand of DNA the same way each time, producing an identical set of small DNA fragments called restriction fragments. b. Most restriction endonucleases produce a staggered cut that leaves a few unpaired nucleotides on a single strand at each end of the restriction fragment. These short strands, often referred to as “sticky ends,” can then form base pairs with other short strands that have complementary strands, creating a recombinant DNA molecule. 12. DNA ligase is used to covalently join two different cut fragments of DNA. This creates a stable, doublestranded recombinant DNA molecule. 13. a. Answers should summarize the information in Figure 7.4 on page 289 of the student textbook. GHI and the expression vector (with selectable markers) should be labelled. b. Selectable markers are used to identify successful recombinant DNA. For example, if the expression vector contained the lacZ gene and an ampicillin resistance gene, the bacteria cells (after transformation) would be spread onto growth media which contains ampicillin antibiotic and X-gal (which turns bacterial colonies blue when bacteria are broken down by the enzyme coded by the active lacZ gene). Bacterial colonies that grown on plates containing ampicillin contain the recombinant DNA or the plasmid only since both have the ampicillin-resistance gene. From this population, the bacterial colonies will either be blue (due to the presence of active lacZ gene, and therefore no GHI gene) or white (due to inactive lacZ gene caused by the insertion of the GHI gene). Therefore, all the white colonies will contain the recombinant DNA. 14. The two nucleotide primers will not be able to anneal to the denatured strands of DNA and amplification will not occur. 15. a. Dideoxynucleotides lack an –OH group at the 3′ and 2′ carbons on the ribose sugar. Therefore, DNA synthesis stops when a dideoxynucleotide is incorporated. b. The 3′–OH group normally reacts with a new nucleotide during DNA synthesis. 16. Yes, the DNA of an individual is unique and shared among all of the individual’s cells. 17. Sample answer: • Privacy concerns—Who will have access to this information? What types of regulation would be needed regarding databank access? • Use—Under what circumstances would national DNA databank be useful/harmful? 18. Answers should be written with consideration for the general public. Diagrams may also be used. 19. The Ti plasmid method could be used to produce a transgenic tomato containing insecticide genes. This method involves inserting the insecticide gene into the Ti plasmid to form a recombinant DNA molecule. The recombinant DNA plasmid is then transformed into the bacterium A. tumefaciens. The tomato cells are then exposed to the bacterium. The recombinant DNA plasmid with the insecticide gene integrates into the tomato cells. Selection of tomato cells containing the recombinant DNA plasmid is performed by using selectable markers. 20. Sample answer: individuals may be denied insurance coverage and/or employment based on their DNA profile or DNA fingerprint and any associated potential for disorders or diseases. 21. Answers may include: • increased crop yield; increased nutritional value and food quality due to less spoilage; greater resistance to pests and diseases; reduction of pesticide usage; reduction of harvesting costs • genes may transfer to other plants and animals; insecticide-resistance plants may release toxins into ecosystems by affecting non-target organisms; food safety issues are unknown, as are the long-term side effects 22. a. Risks—Genes may transfer to other organisms; disruption to ecosystems (effects on food chains, toxicity to other organisms); unknown side-effects of transgenic mosquito bites on humans Biology 12 Answer Key Unit 3 • MHR TR 33 Benefits—Malaria could be controlled without individuals having to use expensive drugs or vaccinations; spread of malaria could be slowed or halted quickly b. Answers will be based on students’ beliefs. 23. Graphic organizers should include: • Transgenic animals—Production is complex and expensive; concerns about safety of therapeutic proteins produced; certain therapeutic proteins can undergo necessary modifications for proper functioning in animal cells • Transgenic bacteria—Inexpensive and easy to grow and maintain; can produce therapeutic proteins very quickly due to bacteria growth rate; certain therapeutic proteins cannot undergo necessary modifications in bacteria cells 24. Answers should resemble Figure 7.22 on page 309 of the student textbook. 25. Answers may include: • Cloning as a reproduction alternative for infertile couples • Cloning as a way to produce organs for transplants • Risks of the commodification of human cloning Answers to Unit 3 Review Questions (Student textbook pages 329–33) 1. c 2. a 3. e 4. b 5. b 6. d 7. a 8. e 9. c 10. d 11. c 12. c 13. b 14. b 15. c 16. The parent DNA is antiparallel and the enzymes need to attach at the 3′ end and travel toward the 5′ end. 34 MHR TR • Biology 12 Answer Key Unit 3 17. They both facilitate the sequencing of the new strand by connecting complimentary bases according to the template. DNA polymerase produces DNA. RNA polymerase produces mRNA. DNA polymerase has proofreading ability and RNA polymerase does not. 18. Proteins can be functional or structural. Proteins are found in the cell membrane as markers and channels. They are also found inside the cell and create the exoskeleton as microtubules and microfibers. Some proteins are enzymes and others are hormones. The combination of these proteins will determine what the cell looks like and what it is able to do. 19. Gene expression refers to the synthesis of protein from DNA in is two steps: transcription and translation. By having two discrete stages, more control mechanisms can be applied to the production of protein. It also allows for mistakes to be corrected in more than one stage. Transcription occurs inside the nucleus and can result in many copies of mRNA travelling to many different ribosomes for the production of the protein through translation. If proteins were made directly from DNA, only one protein could be made at a time. 20. Energy for binding the amino acid to tRNA comes from ATP conversion to ADP. Proteins are essential for cell functioning and growth so translation occurs all of the time and tRNA is constantly picking up new amino acids for the process. 21. The structure of the codon (3 bases) provides several different codons for each amino acid. If a mistake is made during transcription and the variable nucleotide is the one affected, the same amino acid is coded for. Transcription only affects the proteins made from that strand of mRNA. However, if DNA replicates incorrectly, every cell from that point on will have the error. 22. • Prokaryotes—rate of replication is faster, have one origin of replication due to their single chromosome • Similarities—require origins of replication, have elongation in the 5′-3′ direction, have continuous synthesis of a leading strand and discontinuous synthesis of a lagging strand, require the use of a primer for the lagging strand, use DNA polymerase enzymes • Eukaryotes—13 different DNA polymerases (compared to five in prokaryotes), have multiple origins of replication, replication occurs inside the nucleus 23. • Specific—DNA polymerase II proofreads the newly synthesized strand to make sure that the correct bases are added. • Non-specific—Other enzymes that participate in the mismatch repair process look for deformities in the new strand and remove an incorrectly added nucleotide. 24. AUG, UAC, methionine 25. • Initiation—Transfer RNA picks up amino acids as per their anticodon. mRNA combines with rRNA and slips along it until AUG is in the “P” site. • Elongation—The next anticodon on the mRNA fits into the “A” site of the ribosome and the two amino acids are joined by a peptide bond. When methionine is bonded to the next amino acid, its tRNA is released and goes to pick up another methionine. The mRNA is read one codon at a time, with the A site containing the new amino acid and the P site containing the tRNA with the polypeptide growing from it. • Termination—When the stop codon is reached, there is no tRNA to bind and the polypeptide is released. 26. Multiple copies of mRNA can be made from a gene and travel to multiple ribosomes. This allows large amounts of enzymes to be made at once when the cell requires them. 27. • Gene cloning—Recombinant DNA is inserted into E. coli cells which are then cultured. The DNA is later removed and purified. This is used to amplify large segments of chromosomal DNA. • PCR—DNA is denatured, cooled, and has DNA polymerase added. There is no need for a host and this provides large amounts of DNA very quickly. This is used to amplify a gene and can be used on very small traces of DNA. 28. Individualized medicine based upon a person’s genome sequence and cancer diagnosis and treatment by tumour profiling. 29. Biolistic method—Plant cells are struck with tiny particles of gold or platinum that are coated with DNA. The DNA penetrates the walls of the cells and is incorporated. Ti plasmid method—The plasmid is placed into a bacteria which infects the plant. The DNA then integrates into the host genome. 30. A foreign gene is inserted into the egg which is then fertilized. The fertilized egg is implanted into the host and allowed to develop. Applications include increasing digestive efficiency in pigs which reduces their environmental impact and increases the size of salmon to increase the yield at harvest. 31. It would be too difficult to “unzip” them during replication. ATP would be needed for each step. The process would be much slower and would consume a lot more energy. 32. a. produces the antiparallel complementary strand b. produces the correct mRNA sequence which is complementary to the DNA sequence being transcribed c. attaches tRNA to the correct location on the mRNA by matching its anticodon to the mRNA codon 33. Although it depends on the type of mutation, in general, the answer is yes. The exons are the coding regions which are used in the production of proteins. Therefore, a mutation could alter the protein sequence. Introns are non-coding regions and if they are mutated, will not likely to have an effect on protein production. 34. The DNA is wrapped around proteins called histones. 35. 26% adenine, 23% cytosine, 23% guanine 36. To make more protein at one time. 37. a. The promoter region is the place where an activator or repressor attaches to control transcription. Specifically in E. coli, the promotor regions consist of two specifically positioned sequences that are necessary for RNA polymerase complex to correctly bind to the DNA template to promote transcription in the correct direction. Transcription will not occur if the mutation does not allow RNA polymerase to bind to it. b. Same answer as in a. Transcription of the gene will not occur if the mutation affects the binding of RNA polymerase to the promoter region. 38. a. Genes code for all kinds of proteins (which are polypeptides). The hypothesis was updated when the genetic code was broken and the process of protein synthesis was molecularly defined instead of being defined by examining gene defects and metabolic disorders. b. Some proteins are composed of more than one subunit made by more than one gene. Variation can exist in genes which code for the same protein. In addition, there are non-coding regions of genes which are excised before translation occurs. It would be more accurate to say that DNA codes for polypeptides. 39. They look for a complementary sequence. They create a spliceosome. snRNPs are involved in the modification of mRNA molecules. They recognize the regions where exons and introns meet. This allows for the removal of introns. Biology 12 Answer Key Unit 3 • MHR TR 35 40. a. th edo gwa sma d b. The entire sequence of amino acids can be altered; a stop codon can occur that stops translation. 41. Protein synthesis is catalyzed by enzymes. In addition, the attraction of mRNA for rRNA depends on the presence of “active sites”—the AUG sequence on mRNA connects to the P site of the ribosome. Each time tRNA attaches to mRNA, it occurs due to the complementary attraction between the codon and anticodon. 42. a. 5′-CAAUUUCCG-3′ b. GUUAAAGGC c. glutamine-phenylananine-proline 43. Enzymes (which are made of proteins) assist the process of synthesizing proteins. 44. An operon has a promoter followed by a coding region. This allows for simple control of transcription through positive gene regulation (an activator turns it on) or negative gene regulation (a repressor turns it off). 45. • Restriction endonucleases—These enzymes specifically cleave double-stranded DNA in a sequence-specific manner. They can be used to cut the gene from purified genomic DNA, and to cut the vector. • Gene cloning—This process manipulates DNA to produce many copies of a gene or segment of DNA in foreign cells. A gene of interest can be inserted into a vector to form a recombinant DNA molecule. This recombinant DNA molecule can be taken up into a bacterial host to make several identical copies for further study. • PCR—The polymerase chain reaction is an automated method for amplifying specific regions of DNA. It can be used to amplify the gene from genomic DNA. • Gel electrophoresis—This technique uses an electric field to separate fragments of DNA, based on size, as they pass through a gel. It can be used for DNA fragment analysis and purification, and to check if a gene has been successfully inserted into a vector. • Dideoxy sequencing—This method determines the sequence of DNA using dideoxynucleotides. It can be used to determine the sequence in a specific fragment of DNA (such as a gene). • Site directed mutagenesis—Allows insertion of mutations in a DNA sequence. It can be used to study the structure and function of a gene, as well as its protein products. For example, a specific mutation can be inserted in a gene to see what affect it has on the activity of the resulting mutant protein. 36 MHR TR • Biology 12 Answer Key Unit 3 46. a. When lactose is present, the gene will be making lactase to break it down. The gene would always be transcribed due to the lack of a repressor. b. The cell would continue to make lactase even if there is no substrate since there is no way to turn the gene off. 47. a. Use EcoR 1 because it will release Gene B DNA that can be cloned into the EcoR 1 site in Plasmid A. b. I wanted to remove the resistance gene and it has EcoR 1 sequence to create sticky ends that would attach to the sticky ends of Gene B. The other restriction endonuclease Hind III does not disrupt the resistance gene. c. The removal of the resistance gene will make testing for tetracycline resistance possible. If the bacteria is not resistant, the new gene has been inserted. 48. a. –b. Diagrams should show identical lines in column A as those in the Evidence column. Column B should have the same number of lines but in different locations. 49. a. Isolate the gene for the protein from the bacteria using restriction endonucleases, then insert the gene into a Ti plasmid and then insert the plasmid into A. tumefaciens. Infect plant cells with the bacteria. Culture the plant cells in kanamycin and carbenicillin to kill cells that do not contain the new plasmid. Grow the remaining cells into a plant. b. Making sure that the fruit is safe to consume and that the new crops do not harm other organisms/ the environment. 50. a. Isolate the gene and insert it into a plasmid that has the β-lactoglobulin promoter. Then insert the resulting recombinant DNA molecule into a cow oocyte. Fertilize the egg and place the embryo into a host female cow. The milk of the new cow should now contain the protein. b. Diagrams should resemble Figure 7.20 #1 on page 308 of the student textbook. c. The production of proteins in bacteria do not always result in the correct form of the protein. Animal hosts perform the correct modifications to the proteins so they are functional. The protein also does not degrade as rapidly in animal hosts as they do in bacteria. 51. Diagrams should resemble Figure 5.3 in the student textbook. Answers should mention the main procedures and results of the experiments. The terms bacteriophage, radioactive, DNA, protein, capsid, and centrifugation should be included. Results showed that the bacteria were shown to be radioactive in the pellet when the DNA was radioactively labelled. When the capsid protein was radioactively labelled, the bacteriophage “ghosts” were radioactive. These results were significant because it provided evidence that DNA was the source of genetic information for viral reproduction. 54. A—DNA to be copied or 5′ to 3′ DNA strand to be copied B—DNA polymerase C—DNA ligase D—leading strand E—Okazaki fragments F—lagging strand 52. Diagrams should include different symbols to represent sugar, phosphate, and the nucleotides. Diagrams should demonstrate an understanding of structure by showing an alternating of sugar and phosphate for the sugar-phosphate backbone. The use of nucleotide symbols should show complementary base pairing (A and T, G and C). See Figures 5.7 and 6.5 on pages 213 and 251 of the student textbook. 55. Answers might include a rhyme, song, or mnemonic. Manipulatives such as games and Foldables™ can also be generated as a study tool. 53. If DNA replication were conservative, the banding pattern of bands after one round of replication would have shown two bands: one at 14N and one at 15N. Subsequent rounds of replication and centrifugation would show a similar pattern. Diagrams should resemble Figure 5.16 on page 221 of the student textbook (except with the new banding pattern). The representation of the strands should display the original strand of DNA being conserved throughout rounds of replication, with only 15N labelling. Subsequently replicated strands should only have 14N labelling. Type of Mutation 56. Prokaryotic mRNA does not need modification before it can be used for protein synthesis. Eukaryotic precursor mRNA requires several modifications. One of these modifications is the removal of introns through the process of splicing. Diagrams should show that the eukaryotic precursor mRNA has introns and exons whereas the prokaryotic mRNA does not. 57. Diagrams should illustrate the addition of a 5′ cap and a 3′ poly-A tail. The removal of introns through splicing should also be indicated. 58. Diagrams should be similar to Figure 6.25 on page 269 of the student textbook. Components (DNA, pre-mRNA, mRNA, ribosome, polypeptide), processes (transcription, RNA processing, translation), and location (nucleus, cytosol) should be labelled. Arrows should be used to show correct sequence of events. 59. Description Example Effect on cell or organism Point mutation A change in a DNA sequence resulting from a substitution, insertion, or deletion of a single base pair. Substitution: AAG CCT AGC to AAG CTT AGC Variable effects, depending on the result of the mutation. Frameshift mutation An insertion or deletion of nucleotides in a number not divisible by three, which affects neighbouring coding sequences and causes a shift in the reading frame. AAG CCT AAC to ATG CCC TAG C Change in amino acid sequence of the resulting protein. Silent mutation AAG CCT AGC to AAG CCC AGC A change in the DNA sequence that does not result in a change in amino acid sequence (e.g., due to redundancy of the genetic code). Amino acid sequence is unaffected and therefore the protein remains unaffected. There are no effects on the organism. Missense mutation A change in the DNA sequence that changes the amino acid sequence. Substitution of a single base pair: AAG CCT AGC to AAG ACT AGC Results in a change in amino acid sequence. Effects will vary due to the extent of amino acid sequence change. Nonsense mutation A change in the DNA sequence that introduces a premature stop codon that results in a truncated protein. Substitution of a single base pair causing a premature stop codon: AAG CCT AGC to AAG CCT ATC A premature stop codon will be produced. This will result in a truncated protein which may cause loss of function. Biology 12 Answer Key Unit 3 • MHR TR 37 60. Tables should include: • mRNA (messenger RNA)—contains genetic information that determines the amino acid sequence of a protein, the template for translation • tRNA (transfer RNA)—contains an anticodon that base-pairs with a codon on the mRNA and has the corresponding amino acid attached to it according to the genetic code, involved in the translation of mRNA • rRNA (ribosomal RNA)—involved in the translation of mRNA, associates with proteins to produce ribosomes which provide a place for the interaction of mRNA, tRNAs, and enzymes for protein synthesis 61. Graphic organizers such as charts or concept maps should include pre-transcriptional, transcriptional, post-transcriptional, translational, and posttranslational (summarized on pages 269–70 of the student textbook). 62. Diagrams should illustrate that sticky ends have complementary overhangs whereas blunt ends do not produce overhangs and lack specificity. For sticky ends, see Figure 7.1 on page 286 of the student textbook. 63. Diagrams should show the parts of both operons (see Figures 6.23 and 6.24 on pages 267 and 268 of the student textbook) and should identify: • The CAP-binding site for the binding of the activator protein CAP is present in the lac operon but not in the trp operon. • The lac operon contains three genes whereas the trp operon contains five genes. • The two operons use opposite modes of regulation. In the case of lac operon, transcription is off in the absence of lactose. Whereas in the case of trp operon, transcription remains on in the absence of tryptophan amino acid. 64. a. Therapeutic cloning involves the use of SCNT (Somatic Cell Nuclear Transfer). A somatic cell is taken from the patient and the nucleus is removed and placed into a donor egg whose nucleus was previous removed. Replication is then stimulated for the production of stem cells. These stem cells can then be used for therapeutic treatment of the patient. Diagrams may include a step by step outline of the SCNT procedure or possible uses. b. Therapeutic cloning is not permitted in Canada. The process of SCNT is banned under the Canadian Assisted Human Reproduction Act. c. Benefits— • Many possibilities for disease treatment 38 MHR TR • Biology 12 Answer Key Unit 3 • Generated stem cells can be used to grow tissue or organs required • Host DNA provides genetic information for the cells Risks— • There are ethical, legal, and financial concerns • Difficulties in generating a viable cell after nuclear transfer • Research is limited in this area due to bans in certain countries 65. Flowcharts resemble Figure 7.20 on page 308 of the student textbook. 66. Students should use ethical, practical, and financial reasons to support their Point/Counterpoint editorial. The article should have a clear thesis statement and should show a clear understanding of cloning practices, using proper terminology. Articles should also be supported by points and concrete examples from several reputable reference sources. 67. a. Inhibiting translation halts translation and thus prevents bacterial growth, since proteins (the products of translation) are an essential part of growth. b. By only binding to bacterial ribosomes, these antibiotics only inhibit bacterial growth and therefore do not affect the machinery of the host. This allows the antibiotic to target only bacteria. 68. I. Patient A will not produce a protein for the parkin gene if the gene is deleted. II. lengthen III. no change 69. a. Since the BLM gene is a member of the DNA helicase family, it can be hypothesized that a mutation in the BLM gene could affect the unwinding action of the helicase during DNA replication. Defects in the helicase could cause the high frequency of chromosomal breaks and rearrangements that are seen in Bloom’s syndrome. b. • Symptoms could be highly skin related (not optimal for gene therapy). • The higher proportion of chromosomal breaks and rearrangements could cause problems for potential integration therapy. • Ethical issues. 70. a. The policy states that the information collected for the National DNA Data Bank will be used for law enforcement only. Various safeguards and procedures are also in place to ensure the information is not misused. A National DNA Data Bank Advisory Committee has been established to work with the RCMP. b. Any opinion is acceptable if it is includes well thought-out arguments supported by research. Answers should show evidence of critical analysis of the hypothetical situation, possibly supported by strengths or flaws in the National DNA Data Bank’s Privacy and Security policy. 71. Answers should show an understanding of patents in the field of scientific techniques and tools. Answers should be supported by well thought-out arguments. For example, if patents exist for techniques and tools, the process of research will be impeded due to lack of competition. On the other hand, if patents are not allowed, how are companies compensated for their expensive discovery? 72. a. Since certain genes in the Ras family have shown unregulated overexpression in many cancers, RNAi therapy could be used to target these genes for “gene silencing.” RNAi can target specific mRNAs to stop the expression of certain gene products. A reduction in gene products will counteract the overexpression of these genes which are associated with different cancers. b. Drawbacks could include a complete silencing of the Ras family of genes which have functions in normal cells. It is hard to regulate gene expression to appropriate levels. Also, multiple genes may need to be targeted, which could lead to complications. 73. Answers should address the process of “personalized” medical treatment using appropriate terminology. Supporting arguments should show evidence of critical thinking regarding the benefits and drawbacks. Issues such as effectiveness, feasibility, privacy, security, and cost may be addressed. Answers to Unit 3 Self-Assessment Questions (Student textbook pages 334–5) 1. c 2. b 3. c 4. a 5. a 6. d 11. Hershey and Chase used bacteriophages to find out whether DNA or protein was the hereditary material. Bacteriophages are viruses that inject their genetic material into bacterial cells. Hershey and Chase found that a virus with radioactively-labelled protein did not transfer this protein to bacteria, but a virus with radioactively-labelled DNA did transfer its DNA to bacteria. 12. The X-ray shows the diffraction pattern of DNA. From this, Franklin determined that DNA has a defined helical structure with two repeating patterns at intervals of 0.34 nm and 3.4 nm. This evidence supported Watson and Crick’s idea that the components of DNA fit together in a ladder-like helix, with sugar-phosphate molecules on the outside and nitrogenous bases on the inside. In the Watson and Crick model, the “rungs” of the DNA ladder have a constant width, as shown by Franklin’s X-ray diffraction pattern. 13. Beadle and Tatum proposed that a single gene determines the production of one enzyme, a concept known as the “one-gene/one-enzyme hypothesis.” This hypothesis was later updated to account for the fact that not all proteins are enzymes, and that some enzymes are composed of two or more polypeptide chains. The onegene/one- polypeptide hypothesis states that one gene codes for one polypeptide (or protein). 14. Tables should include: • DNA—deoxyribonucleic acid; polymer of nucleotides, each with a phosphate group, sugar group, and base; contains deoxyribose; contains the nucleotides adenine, thymine, guanine, and cytosine; double-stranded (double helix); a template for RNA synthesis (transcription) • RNA—ribonucleic acid; polymer of nucleotides, each with a phosphate group, sugar group, and base (same as DNA); contains ribose; contains the nucleotides adenine, uracil, guanine, and cytosine; single-stranded; codes for amino acids; provides instructions for protein synthesis (translation) Has various forms with different functions; key types are messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA) 8. a 15. The structure of a protein depends on its amino acid sequence. The amino acid sequence is ultimately encoded in the sequence of nucleotide triplets in DNA. 9. a 16. 18% thymine, 18% guanine, and 18% cytosine 7. b 10. e Biology 12 Answer Key Unit 3 • MHR TR 39 17. Enzyme/Protein Functions Helicase Helps unwind the parent DNA Single-strandbinding protein Stabilizes single-stranded regions of DNA during unwinding Topoisomerase II Relieves strain on DNA caused by unwinding Primase Synthesizes RNA primer DNA polymerase III Adds nucleotides to the 3′ end of growing DNA strand DNA polymerase I Removes RNA primer and fills gaps between Okazaki fragments; proofreads newly synthesized DNA DNA polymerase II Proofreads newly synthesized DNA DNA ligase Joins the ends of Okazaki fragments 18. Graphic organizers should identify key concepts and relationships illustrated in Figure 5.12 on page 216 of the student textbook, from the simplest level of DNA organization (nucleosomes) to its highest (chromosomes). 19. a. 5′-TACACATGCATC-3′ 3′-ATGTGTACGTAG-5′ b. The 3′ end of the segment has the free –OH group. c. The amino acid sequence of the polypeptide product of this gene is methionine start-cysteinethreonine-stop. d. Sample answer: A nucleotide substitution in the DNA segment 5′-TACACATGCATC-3′ to 5′-TACACATGGATC-3′ would be a silent mutation because the mutation does not result in an amino acid change: TGG is transcribed into ACC, which codes for threonine. 20. Diagrams should resemble Figures 6.12 to 6.15 on pages 258–60 of the student textbook. Answers should show an understanding of initiation, elongation, and termination. 21. The sequence of amino acids in a protein can be traced back to the sequence of nucleotides in DNA. Because only complementary bases can pair (A with T or U, and G with C), the nucleotide sequence in DNA is a template for mRNA, and the codons in mRNA pair with specific anticodons in tRNA. Each tRNA carries a specific amino acid. 40 MHR TR • Biology 12 Answer Key Unit 3 22. Sample answer: 1. Isolate the Bt gene from Bacillus thuringiensis using restriction enzymes. 2. Insert the Bt gene into the altered T-DNA region of the Ti plasmid using DNA ligase. 3. Move the recombinant Ti plasmid into Agrobacterium tumefaciens. 4. Infect plant cells with A. tumefaciens. 5. Select plant cells with selectable markers. 6. Grow plants from the recombinant plant cells. 23. To make the DNA visible it is treated with a chemical, such as ethidium bromide. → Mixtures of differentsized DNA fragments are added to wells at the end of a gel. → The gel is placed in a buffer solution and exposed to an electric current. → The negatively charged DNA fragments move toward the positively charged anode. → The electric current is turned off and the gel viewed under ultraviolet light. 24. a. Sample answer: The transgenic carrot plant can be grown without the addition of harmful pesticides. However, prior to approving the transgenic plant for consumption by people, livestock, or pets, it should be demonstrated that it is safe to eat. Other risks to consider are environmental effects, such as negative impacts on beneficial insects and worms or gene transfer to wild plants in or near the croplands. b. Sample answer: Farmers will no longer be exposed to harmful pesticides when growing this crop and will not have to spend money on pesticides. However, the seeds/plant may be expensive and the farmer may have difficulty controlling the spread of the pest-resistance gene to other plants. 25. Answers should use relevant formal biology vocabulary, be free from grammar and spelling errors, and be substantiated by a reasoned argument. Sample answer: The potential negative effects of transgenic plants on ecosystems need to be better understood, so this area of research will be awarded $20 million. Gene therapy holds promise for treating devastating genetic human diseases, so will be awarded $40 million. Cell cycle regulation holds promise of understanding and treating cancer and stopping the spread of malignant tumours, so will be awarded $40 million.