CELLS Chapter:3 Cell Theory • The cell is the smallest structural and functional living unit • Organismal functions depend on individual and collective cell functions • Biochemical activities of cells are dictated by their specific subcellular structures • Continuity of life has a cellular basis CELLS Definition: cells are the smallest units that perform life functions (functional unit of life) Two classes of cells in the body: 1. Germ cells: reproductive (sex cells); Examples: sperm ovum 2. Somatic cells: (body) all other body cells Cell Diversity • Over 200 different types of human cells • Types differ in size, shape, subcellular components, and functions Erythrocytes Fibroblasts Epithelial cells (a) Cells that connect body parts, form linings, or transport gases Skeletal Muscle cell Smooth muscle cells (b) Cells that move organs and body parts Macrophage Fat cell (c) Cell that stores (d) Cell that nutrients fights disease Nerve cell (e) Cell that gathers information and control body functions (f) Cell of reproduction Sperm CELLS • Cells have many structures in common; however, in addition, cells have special adaptations to help them perform their functions • The “generalized” cell helps us learn those structures that may be present in any one cell. • No cell has all the structures of this “generalized” cell. Chromatin Nucleolus Nuclear envelope Nucleus Smooth endoplasmic reticulum Mitochondrion Cytosol Lysosome Centrioles Centrosome matrix Cytoskeletal elements • Microtubule • Intermediate filaments Plasma membrane Rough endoplasmic reticulum Ribosomes Golgi apparatus Secretion being released from cell by exocytosis Peroxisome Generalized Cell • All cells have some common structures and functions • Human cells have three basic parts: – Plasma membrane - flexible outer boundary – Cytoplasm - intracellular fluid containing organelles – Nucleus - control center Plasma (Cell) Membrane • The plasma membrane or cell membrane separates the cell contents from the extracellular fluid. • The main structural components of the plasma membrane are phospholipids, proteins, and carbohydrates • The phospholipid molecules are arranged in a double layer (phospholipid bilayer) Extracellular fluid (watery environment) Polar head of phospholipid molecule Cholesterol Glycolipid Glycoprotein Carbohydrate of glycocalyx Outwardfacing layer of phospholipids Integral proteins Filament of cytoskeleton Peripheral Bimolecular Inward-facing proteins lipid layer layer of containing phospholipids Nonpolar proteins tail of phospholipid Cytoplasm molecule (watery environment) Membrane Lipids • 75% phospholipids (lipid bilayer) – Phosphate heads: polar and hydrophilic – Fatty acid tails: nonpolar and hydrophobic • 5% glycolipids – Lipids with polar sugar groups on outer membrane surface • 20% cholesterol – Increases membrane stability and fluidity Membrane Proteins • Integral proteins – Firmly inserted into the membrane (most are transmembrane) – Functions: • Transport proteins (channels and carriers), enzymes, or receptors Membrane Proteins • Peripheral proteins – Loosely attached to integral proteins – Include filaments on intracellular surface and glycoproteins on extracellular surface – Functions: • Enzymes, motor proteins, cell-to-cell links, provide support on intracellular surface, and form part of glycocalyx Extracellular fluid (watery environment) Polar head of phospholipid molecule Cholesterol Glycolipid Glycoprotein Carbohydrate of glycocalyx Outwardfacing layer of phospholipids Integral proteins Filament of cytoskeleton Peripheral Bimolecular Inward-facing proteins lipid layer layer of containing phospholipids Nonpolar proteins tail of phospholipid Cytoplasm molecule (watery environment) Transport A protein (left) that spans the membrane may provide a hydrophilic channel across the membrane that is selective for a particular solute. Some transport proteins (right) hydrolyze ATP as an energy source to actively pump substances across the membrane. Receptors for signal transduction Signal Receptor A membrane protein exposed to the outside of the cell may have a binding site with a specific shape that fits the shape of a chemical messenger, such as a hormone. The external signal may cause a change in shape in the protein that initiates a chain of chemical reactions in the cell. Attachment to the cytoskeleton and extracellular matrix (ECM) Elements of the cytoskeleton (cell’s internal supports) and the extracellular matrix (fibers and other substances outside the cell) may be anchored to membrane proteins, which help maintain cell shape and fix the location of certain membrane proteins. Others play a role in cell movement or bind adjacent cells together. Enzymatic activity Enzymes A protein built into the membrane may be an enzyme with its active site exposed to substances in the adjacent solution. In some cases, several enzymes in a membrane act as a team that catalyzes sequential steps of a metabolic pathway as indicated (left to right) here. Intercellular joining Membrane proteins of adjacent cells may be hooked together in various kinds of intercellular junctions. Some membrane proteins (CAMs) of this group provide temporary binding sites that guide cell migration and other cell-to-cell interactions. CAMs Cell-cell recognition Some glycoproteins (proteins bonded to short chains of sugars) serve as identification tags that are specifically recognized by other cells. Glycoprotein Membrane Junctions Three types: v Tight junction - Impermeable junctions prevent molecules from passing through the intercellular space. v Desmosome - Anchoring junctions bind adjacent cells together and help form an internal tensionreducing network of fibers v Gap Junctions - Transmembrane proteins form pores that allow small molecules to pass from cell to cell – For spread of ions between cardiac or smooth muscle cells Tight junctions Plasma membranes of adjacent cells Microvilli Intercellular space Basement membrane Interlocking junctional proteins Intercellular space (a) Tight junctions: Impermeable junctions prevent molecules from passing through the intercellular space. Desmosomes Plasma membranes of adjacent cells Microvilli Intercellular space Basement membrane Intercellular space Plaque Intermediate filament (keratin) Linker glycoproteins (cadherins) Gap junctions Plasma membranes of adjacent cells Microvilli Intercellular space Basement membrane Intercellular space Channel between cells (connexon) Gap junctions: Communicating junctions allow ions and small molecules to pass from one cell to the next for intercellular communication. Membrane Transport Transport through the plasma membrane can be 1.Passive ( No energy required ) • Passive processes: üSimple Diffusion üFiltration 2. Active ( requiring energy and ATP ) 3.Carrier mediated transport (active and passive) • Filtration: the process by which water and solutes are forced through a membrane by fluid pressure. Water and urea To urinary bladder Diffusion • Diffusion is the net movement of molecules from an area of relatively high concentration to an area of relatively low concentration – molecules mix randomly – Solute spreads through solvent – Solutes move down a concentration gradient Diffusion 1. Simple diffusion 2. Facilitated diffusion – Carrier mediated facilitated diffusion – Channel mediated facilitated diffusion Passive Processes: Simple Diffusion • Nonpolar lipid-soluble (hydrophobic) substances diffuse directly through the phospholipid bilayer Extracellular fluid Lipidsoluble solutes Cytoplasm (a) Simple diffusion of fat-soluble molecules directly through the phospholipid bilayer Figure 3.7a Facilitated diffusion • Special type of diffusion that involves a carrier molecule • Carrier molecules transport down a concentration gradient • Energy is not required • Example: movement of glucose from the blood into the cells Passive Processes: Facilitated Diffusion • Certain lipophobic molecules (e.g., glucose, amino acids, and ions) use carrier proteins or channel proteins, both of which: • Exhibit specificity (selectivity) • Are saturable; rate is determined by number of carriers or channels • Can be regulated in terms of activity and quantity Copyright © 2010 Pearson Education, Inc. Facilitated Diffusion Using Carrier Proteins • Transmembrane integral proteins transport specific polar molecules (e.g., sugars and amino acids) • Binding of substrate causes shape change in carrier Copyright © 2010 Pearson Education, Inc. Lipid-insoluble solutes (such as sugars or amino acids) (b) Carrier-mediated facilitated diffusion via a protein carrier specific for one chemical; binding of substrate causes shape change in transport protein Copyright © 2010 Pearson Education, Inc. Figure 3.7b Facilitated Diffusion Using Channel Proteins • Aqueous channels formed by transmembrane proteins selectively transport ions or water • Two types: • Leakage channels • Always open • Gated channels • Controlled by chemical or electrical signals Copyright © 2010 Pearson Education, Inc. Passive Processes: Osmosis • Movement of solvent (water) across a selectively permeable membrane • Water diffuses through plasma membranes: – Through the lipid bilayer – Through water channels called aquaporins (AQPs) Water molecules Lipid billayer Aquaporin (d) Osmosis, diffusion of a solvent such as water through a specific channel protein (aquaporin) or through the lipid bilayer Figure 3.7d Passive Processes: Osmosis • Water concentration is determined by solute concentration because solute particles displace water molecules • Osmolarity: The measure of total concentration of solute particles • When solutions of different osmolarity are separated by a membrane, osmosis occurs until equilibrium is reached (a) Membrane permeable to both solutes and water Solute and water molecules move down their concentration gradients in opposite directions. Fluid volume remains the same in both compartments. Left compartment: Solution with lower osmolarity Right compartment: Solution with greater osmolarity Both solutions have the same osmolarity: volume unchanged H 2O Solute Membrane Solute molecules (sugar) Figure 3.8a (b) Membrane permeable to water, impermeable to solutes Solute molecules are prevented from moving but water moves by osmosis. Volume increases in the compartment with the higher osmolarity. Left compartment Right compartment Both solutions have identical osmolarity, but volume of the solution on the right is greater because only water is free to move H 2O Membrane Solute molecules (sugar) Figure 3.8b Importance of Osmosis • When osmosis occurs, water enters or leaves a cell • Change in cell volume disrupts cell function Tonicity • Tonicity: The ability of a solution to cause a cell to shrink or swell • Isotonic: A solution with the same solute concentration as that of the cytosol • Hypertonic: A solution having greater solute concentration than that of the cytosol • Hypotonic: A solution having lesser solute concentration than that of the cytosol (a) Isotonic solutions Cells retain their normal size and shape in isotonic solutions (same solute/water concentration as inside cells; water moves in and out). (b) Hypertonic solutions Cells lose water by osmosis and shrink in a hypertonic solution (contains a higher concentration of solutes than are present inside the cells). (c) Hypotonic solutions Cells take on water by osmosis until they become bloated and burst (lyse) in a hypotonic solution (contains a lower concentration of solutes than are present in cells). Figure 3.9 Osmosis • A special type of diffusion – Osmosis is the diffusion of water across the cell membrane – Water molecules diffuse across membrane toward solution with more solutes Tonicity • Tonicity : The ability of a solution to change the shape or tone of cells by altering the cell’s internal water volume. – Isotonic – Hypertonic – Hypotonic Tonicity • Isotonic: Solutions that have the same concentration of solute outside of the cell • Hypertonic: Solution that has a greater concentration of solutes • Hypotonic: Solution where the solute concentration is low Tonicity § If a cell is placed in a hypertonic solution it will shrink and lose its water volume § More solutes → gains water by osmosis Tonicity • If a cell is placed in a hypotonic solution it will swell and gain the water volume • Lysis- rupture of a cell Active transport • Atoms, ions and molecules move from LOW concentration to high concentration through a cell membrane • The cells USE energy (ATP) to perform active transport • Active transport also require a protein carrier molecule – Example: Sodium - Potassium “Pump” Vesicular Transport • In vesicular transport, fluids containing large particles and macromolecules are transported across the cellular membrane inside membranous sacs called vesicles. • Requires cellular energy (e.g., ATP) Vesicular Transport • Functions: – Exocytosis - transport out of cell – Endocytosis - transport into cell – Transcytosis - transport into, across, and then out of cell – Substance (vesicular) trafficking - transport from one area or organelle in cell to another Endocytosis and Transcytosis • Involve formation of protein-coated vesicles • Often receptor mediated, therefore very selective Vesicular Transport Endocytosis • Phagocytosis—pseudopods engulf solids and bring them into cell’s interior – Macrophages and some white blood cells Phagosome (a) Phagocytosis The cell engulfs a large particle by forming projecting pseudopods (“false feet”) around it and enclosing it within a membrane sac called a phagosome. The phagosome is combined with a lysosome. Undigested contents remain in the vesicle (now called a residual body) or are ejected by exocytosis. Vesicle may or may not be proteincoated but has receptors capable of binding to microorganisms or solid particles. Figure 3.13a Endocytosis • Fluid-phase endocytosis (pinocytosis)— plasma membrane infolds, bringing extracellular fluid and solutes into interior of the cell – Nutrient absorption in the small intestine (b) Pinocytosis The cell “gulps” drops of extracellular fluid containing solutes into tiny vesicles. No receptors are used, so the process is nonspecific. Most vesicles are protein-coated. Vesicle Figure 3.13b Endocytosis • Receptor-mediated endocytosis— clathrin-coated pits provide main route for endocytosis and transcytosis – Uptake of enzymes low-density lipoproteins, iron, and insulin Vesicle Receptor recycled to plasma membrane (c) Receptor-mediated endocytosis Extracellular substances bind to specific receptor proteins in regions of coated pits, enabling the cell to ingest and concentrate specific substances (ligands) in protein-coated vesicles. Ligands may simply be released inside the cell, or combined with a lysosome to digest contents. Receptors are recycled to the plasma membrane in vesicles. Figure 3.13c Exocytosis • Examples: – Hormone secretion – Neurotransmitter release – Mucus secretion – Ejection of wastes Vesicular Transport PARTS OF THE CELL Plasma (Cell) Membrane Outside cell Inside cell Functions: 1. Physical barrier between the contents of the cell and the extra-cellular fluid. Functions of the cell membrane cont’d 2. Regulates exchange of chemicals into and out of the cell (transport) • Nutrients, gases (oxygen) go into the cell • Wastes, gases (carbon dioxide), cell secretions go out of the cell Functions of the cell membrane cont’d • 3. Sensitivity: Responds to the extracellular environment. Ø Receptors on the membrane allow the cell to respond to hormones Functions of the cell membrane cont’d 4. Structural support: some membranes have connections to other cells to help attach cells to other structures (cells or molecules) 5. Cell Identity: Special proteins help the immune system identify a cell as belonging to you. v Concept of “SELF”. PARTS OF THE CELL CYTOPLASM DEFINITION: Material located inside the plasma membrane and outside the nucleus. nucleus Plasma membrane CYTOPLASM cont’d 2 SUB-DIVISIONS: 1. Cytosol = intracellular fluid. Ø Its chemical nature is colloid (contains proteins, thickness similar to jello). Contains: • Carbohydrates, water • Small amounts of lipids • Large amounts of amino acids PARTS OF THE CELL CYTOPLASM cont’d 2. Organelles: • Have a specific structure to perform a specific function 2 Types: • Not enclosed in a membrane • Enclosed in a membrane (membranous) TYPES OF ORGANELLES MITOCHONDRIA (plural) MITOCHONDRION (singular) “power plant (house) of the cell” • Function: Continues the breakdown of glucose to release energy - then stores the energy in the ATP molecule. • This process requires oxygen. Mitochondrion (enlarged) Mitochondrion (cut in half, enlarged) MITOCHONDRIA Structure: Two membranes 1. Smooth outer membrane 2. Inner membrane forms folds called cristae Ø The inner membrane contains enzymes that are arranged in a special sequence to carry out the chain reactions required to form ATP. Ø Having the folds increases the surface area, thus increases the amount of enzymes in each mitochondrion Ø Enzymes are special proteins that speed up the rate of chemical reactions Ø ATP is a molecule that stores energy cristae MITOCHONDRIA Self-replication: Each mitochondrion has a small amount of DNA so they can replicate 1. Just before cell division 2. When the cell needs more energy (on a regular basis). Example: when a person increases the regular amount of exercise more ATP is needed so mitochondria in skeletal and cardiac muscle will multiply. RIBOSOMES Structure: Small granules composed of RNA and protein. Location: 1. Free floating in the cytoplasm 2. Attached to membranes called Endoplasmic reticulum RIBOSOMES Function: Site of protein synthesis. Nickname: protein factory of the cell. ENDOPLASMIC RETICULUM ENDOPLASMIC RETICULUM “ER” Structure: An extensive system of interconnected tubes made of membranes that extends from the nucleus to the plasma membrane. ENDOPLASMIC RETICULUM “ER”, cont’d Two varieties: 1. Rough ER = The exterior surface contains ribosomes Function: its ribosomes make proteins for secretion 2. Smooth ER = does not have ribosomes. Functions: • Contains enzymes for lipid metabolism • In liver cells, for detoxification of toxins, medication GOLGI APPARATUS (Golgi cell, Golgi Body) Golgi Apparatus GOLGI APPARATUS Only one per cell Structure: stacked membranous sacs Golgi Apparatus, cont’d Function: modifies, concentrates, packages the proteins and membranes made in the Rough ER. Proteins are packaged into membranous sacs called vesicles which will have one of three fates: 1. Vesicle moves to plasma membrane and proteins are secreted from the cell. 2.Vesicle moves to plasma membrane and the membrane of the vesicle becomes incorporated into the plasma membrane. 3 2 1 3. The vesicle becomes a lysosome that contains digestive enzymes which will break down structures in the cell. LYSOSOMES (many per cell) Lysosomes cont’d Structure: a vesicle made of membrane from the Golgi complex; can contain up to 40 different digestive enzymes (proteins). Functions: 1. Digest old cell organelles 2. Help digest damaged, dying or dead cells 3. In white blood cells that have “eaten” bacteria, lysosomes digest the bacteria Nicknames: “Suicide organelle” “Demolition organelle” CENTRIOLES with CENTROSOME Centrosome Centriole CENTRIOLES Structure: Each centriole is a bundle of tubules placed at right angles to each other. Function: Make the spindle fibers for cell division (mitosis) CENTRIOLES • Not found in: – Red blood cells – Adipose (fat cell) – Skeletal and Cardiac muscle – Neuron (nerve cells) • These cells do not divide so they don’t need centrioles. CYTOSKELETON: Internal protein framework of the cell Structure: Filaments (threads) and Tubules (tiny pipes) CYTOSKELETON: Internal framework of the cell Functions: Provides strength and structural support for the cell and its organelles; helps move organelles and change shape of cell. Examples of Filaments: Contractile protein in muscle Examples of Tubules: Centrioles, cilia, spindle fibers (for mitosis) CYTOSKELETON: Internal protein framework of the cell Structure: Filaments (threads) and Tubules (tiny pipes) Contractile fibers in muscle Provides shape to cell Centrioles MICROVILLI a special feature of some cells Structure: Small finger shaped projections of the cell membrane microvilli microvillus (singular) MICROVILLI • Function: Increase surface area of the membrane. • They function in absorbing materials from the extracellular fluid Ø They are most often found on the surface of absorptive cells such as the intestinal and kidney tubule cells. MICROVILLI Villi in the lining of the small intestine absorb the digested nutrients into the blood stream CILIA Structure : Tiny hair-like projections of the cell membrane that contain microtubules (part of the cytoskeleton) CILIA Function: Cilia “beat” rhythmically to move particles along the surface of the cells. Ex: Cilia that line the respiratory tract move mucus and trapped dust particles upward away from the lungs. FLAGELLA (plural) FLAGELLUM (singular) Structure: similar to cilia but much longer. Function: to move cells through liquid. NUCLEUS Function: Control center of the cell. Ø It contains the DNA that has the instructions for synthesizing all proteins of the cell (structure and function). nucleus NUCLEUS cont’d NUCLEUS cont’d • STRUCTURE: – Nuclear Envelope: Double membrane. – Outer membrane is continuous with the rough ER and is covered with ribosomes. – It has large pores called nuclear pores • Nucleoli (pl.) / Nucleolus (singular) – One or two per cell, dark staining spherical bodies – No membrane – Form ribosomes from rRNA and proteins NUCLEUS cont’d • Chromatin: long threads of DNA and proteins called histones. • Just before cell division, the chromatin coils condenses into rods called chromosomes. PROTEIN SYNTHESIS Terms to Review: Amino acids: subunits of protein; 20 different amino acids Protein: composed of amino acids bonded in a specific order Purposes: structure and function Examples: antibodies, hormones, blood clotting factors, enzymes Polypeptide: three or more amino acids bonded; a short chain of amino acids Peptide bond: the bond formed between two amino acids. DNA contains the genetic code because it has the instrucitons for the sequence of amino acids in proteins. Gene: the portion of DNA that codes for one protein. RNA: ribonucleic acid mRNA = formed in the nucleus (messenger) carries instructions to the ribosome tRNA = located in the cytoplasm (transfer) brings amino acids to the ribosome Ribosome = the protein factory of the cell RNA Molecules • Single strand of nucleotides • Each nucleotide contains: ribose, phosphate, base (A, G, C, and Uracil instead of Thymine) • Shorter than DNA • Different types: mRNA (carries code from DNA to ribosome), tRNA (brings amino acids to ribosome), rRNA (a component of ribosomes) RNA Molecules Protein Synthesis involves 2 steps, each requiring RNA and enzymes • Transcription occurs in the nucleus and is the process of copying DNA information into an RNA sequence • Translation occurs at the ribosomes in the cytoplasm as the code is transferred to a growing chain of amino acids PROTEIN SYNTHESIS 1. DNA (in the nucleus) contains the code for the sequence of amino acids in the protein. DNA cannot leave the nucleus, so it needs a messenger to carry the code to the ribosome, or protein factory of the cell PROTEIN SYNTHESIS 2. In the nucleus, the DNA code is transcribed into the RNA form as messenger RNA (mRNA) PROTEIN SYNTHESIS 3. mRNA leaves the nucleus and attaches to a ribosome. PROTEIN SYNTHESIS 4. Transfer RNA (tRNA) brings a specific amino acid to the ribosome. tRNA tRNA tRNA tRNA tRNA PROTEIN SYNTHESIS 5. tRNA (with the amino acid attached) transcribes or “reads” the mRNA code and places the amino acid in the correct spot. The process is called “translation” tRNA tRNA tRNA tRNA tRNA PROTEIN SYNTHESIS 6. Another tRNA brings the next amino acid to its correct spot (next to the first amino acid) and a peptide bond is formed between the two amino acids. tRNA tRNA tRNA tRNA PROTEIN SYNTHESIS 6. Another tRNA brings the next amino acid to its correct spot (next to the first amino acid) and a peptide bond is formed between the two amino acids. tRNA tRNA tRNA PROTEIN SYNTHESIS 7. This process is repeated until the entire chain of amino acids is assembled to form the protein. PROTEIN SYNTHESIS 8. A “stop” message on the mRNA will tell the tRNA that the protein is completed. The protein chain will be released from the ribosome into the cytoplasm or a vesicle made from the membrane of the ER. 9. Identical proteins will be formed until the cell has enough of that type. protein ribosome Endoplasmic reticulum