GCSE Edexcel Biology Self-Studying Textbook Thank you to these people who helped make this resource possible Aimua Igbenehi Damilola Olatunji Faran Ahmad James San Ohm Joshi Sulaiman Galaria 1 Unit 1 – Key Concepts Biology…………………………………….………….3 Unit 2 – Cells and Control …………………………………………………...15 Unit 3 – Genetics ……………………………………………………...……...21 Unit 4 – Natural Selection and Genetic Modification ……………………...31 Unit 5 – Health, Disease, and the Development of Medicine ………...……41 Unit 6 – Plant Structures and their Functions ……………………...……...49 Unit 7 – Animal Coordination and Homeostasis …………………………...59 Unit 8 – Exchange and Transport in Animals ……………………………...69 Unit 9 – Ecosystems ………………………………………………………….77 Foreword Although I was pleased with my results, the lockdowns had shut out education for many students. Tens of thousands of schoolboys and schoolgirls had fragmented knowledge with regards to their syllabus. They had internet issues. The recommended school textbooks were expensive. It was not their fault. Earlier in the February of 2021, my laptop had broken down. The solder that connects the power button to the motherboard had snapped off, so I had some minor problems with online school. Fortunately, I was able to use my phone to hear what the teacher was saying and still learn during my lessons. For others, they are not so fortunate. Fuelled with a sense of responsibility, I decided to embark on a project alongside the best students at my school. A team of seven of the top students at WCGS helped to synthesise this free ‘GCSE Edexcel Self-Studying Physics Textbook’ and the ‘GCSE Edexcel Self-Studying Biology Textbook over the duration of summer and we began working the week after our exams had finished. We had read through all the specification points and have completed a myriad of past paper questions and mark schemes to ensure that the knowledge delivered to you is correct. Please use this book in supplement to practice questions. I hope that you will be inspired to do the best for yourself in education because it is a powerful tool that will leverage you through the difficulties and to the heights. Warm wishes, Ken Tu (L6 2021-2022) 2 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu Introduction to Biology 1.1) Prokaryotic vs Eukaryotic Cells can be prokaryotic or eukaryotic. Eukaryotic cells are bigger and complex (they also have a nucleus) and include all animal and plant cells. Prokaryotic cells are smaller and simpler (have no nucleus), e.g. bacteria. Both eukaryotic and prokaryotic cells have organelles. Nucleus: contains the genetic material which controls the activities of the cell. Cytoplasm: a jelly-like substance where most chemical reactions happen. It contains enzymes which control these chemical reactions. Cell membrane: this holds the cell together and controls what goes in and out of the cell. Mitochondria: these are where most of the reactions for aerobic respiration take place. Aerobic respiration produces ATP, which releases energy that the cell needs to work. Ribosomes: these are involved in protein synthesis, where new proteins are made for the cell. Plant cells contain the same organelles as animal cells and these: Cell wall: this is a rigid layer made of cellulose. It supports and strengthens the cell. Vacuole: this large structure contains cell sap – a weak solution of sugar and salts. It maintains the internal pressure to support the cell, keeps the cell turgid and prevents the cell from undergoing lysis. Chloroplasts: these contain a green pigment called chlorophyll. This absorbs the light needed for photosynthesis. Photosynthesis creates glucose and oxygen, which are needed by the plant. Note: you can remember the above for plant cells only organelles as CCV, Chloroplast, Cell wall, and Vacuole. 3 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu Specialised Cells 1.2) Specialised Cells A specialised cell is a cell that performs a specific function. Most cells in an organism are specialised. A cell’s structure (e.g. the shape and the parts it contains) helps it to carry out its function. Sperm cells transport the male DNA to the female DNA in the egg via sexual reproduction to create a zygote. As a result, sperm cells have: • • • • long tails to swim to the egg lots of mitochondria in their middle pieces to provide the energy they need to swim to the egg enzymes in the acrosome of their heads that digest through the membrane of the egg haploid nuclei (23 chromosomes in the nuclei; every healthy human has 23 pairs of chromosomes i.e 46 total) to ensure that the zygote has the correct number of chromosomes. The main functions of an egg (ovum) are to carry the female DNA and to nourish the developing embryo in the early stages. To enable it to do this, egg cells contain nutrients in the cytoplasm to feed the embryo. Like sperm cells, egg cells have haploid nuclei. Straight after fertilisation, its membrane hardens to stop any more sperm getting in. This makes sure the offspring end up with the correct amount of DNA. Epithelial cells line the surfaces of organs. Some of them have cilia (hair-like structures) on the top surface of the cell. The function of these ciliated epithelial cells is to move substances – the cilia beat to move substances in one direction, along the surface of the tissue. The lining of the airways contains lots of ciliated epithelial cells. These help to move mucus (and all of the particles from the air that it has trapped) up to the throat so it can be swallowed and doesn’t reach the lungs. 4 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu Microscopes 1.3 - 1.5) Microscopy Light (optical) microscopes: These were invented in the 1590s. They use light and lenses to form an image of a specimen and magnify it. They let us see individual cells and larger organelles, like nuclei and chloroplasts. Electron microscopes: These were invented in the 1930s. They use beams of electrons instead of light, and so they have a higher magnification and resolution than light microscopes. Electron microscopes allow us to see organelles in much more detail, e.g. the internal structure of mitochondria and chloroplasts, as well as smaller organelles like ribosomes. Magnification is the process of enlarging the physical appearance or image of something. If you know the power of the microscope lenses used to view a specimen, you can work out the total magnification of the image using this formula: Total magnification = eyepiece lens magnification × objective lens magnification If you don’t know the power of the microscope lenses, but know the actual size of the specimen and the measurement of the image, you can use this formula: Magnification = image size ÷ actual size Or remember the mnemonic AIM, a formula triangle. Actual size (bottom left), Image size (top), Magnification (bottom right). Microscopes are used at very small objects, and so the actual sizes of the specimen may be in standard form – so you need to know how to calculate with them. Resolution is the ability to distinguish separate structures at close points. If resolution is low, the image is ‘blurry’ and unclear, but if resolution is high, then the image is clearer and generally more saturated. 5 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu You need to be able to convert between units of length. Here’s a guide: Metres = m 1 m = 1000 mm Millimetres = mm 1 mm = 1000 μm Micrometres = μm 1 μm = 1000 nm Nanometres = nm 1 nm = 1000 pm. Picometres = pm 1.6) Microscopy Core Practical To carry out microscopy, you need: a specimen, a light microscope, a slide, a coverslip, a mounted needle, a stain, a pipette, a paper towel, tweezers / cotton buds, distilled water, a knife and disinfectant. Using a pipette, add a drop of distilled water to the middle of a clean slide. If examining onion cells, cut up an onion with a knife and separate it into layers. Use tweezers to pull off some epidermal tissue from one of the layers. If examining cheek cells, stroke the inside of your cheek gently with a cotton bud, collecting only the loose cells. Use the end of the cotton bud to stir the distilled water on the slide. Put the used cotton bud in disinfectant. • • • • • • • • • • Use a different pipette to add a stain. For onion cells, add iodine solution. For cheek cells, add methylene blue solution. Place a coverslip onto the slide at a 45° angle on one edge of the drop of distilled water. Gently lower the coverslip down onto the drop with a mounted needle, without trapping air bubbles. Dab on excess liquid from under the coverslip with a paper towel. Examining the specimen Start by clipping the slide you’ve prepared onto the stage. Select the lowest-power objective lens (i.e., the objective lens with the lowest magnification). Use the coarse adjustment knob to move the stage upwards to just below the objective lens. Look down the eyepiece. Use the coarse adjustment knob to move the stage downwards until the image is roughly in focus. Adjust the focus with the fine adjustment knob, until you get a clear image of the specimen on the slide. If you need to see the slide with greater magnification, swap to a higher-power objective lens and refocus. 6 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu The Purpose of Enzymes 1.7 - 1.9) Enzyme Activity Enzymes are biological catalysts – they increase the speed of a reaction, without being changed or used up in the reaction. Enzymes are proteins with different structures. Since they are proteins, they are made up of chains of amino acids. These chains are folded into unique shapes, which enzymes need to perform their functions. The lock-and-key model is used to show how enzymes work. The enzyme has an active site which is specific to a substrate. When this substrate joins with the enzyme, this is an enzymesubstrate complex. Their shapes can fit because they have complementary shapes to each other. The enzyme is also to slightly change its shape to be fully complementary to the substrate. This is called induced fit. When the reaction finishes, products are made. These products are from two types of enzymesubstrate complexes: catalysis and synthesis. Catalysis is when a complex substance (e.g., a lipid) is separated or broken down into simpler substances (e.g. fatty acids and glycerol). The diagram above demonstrates an example of catalysis. Synthesis is when simpler substances (e.g., glucose) are joined to make a complex substance (e.g. starch). If the active site changes shape so that it is no longer specific to the substrate, the enzyme is denatured. Enzyme Activity Temperature is a major factor to the rate of enzyme activity. At first, an increase in temperature increases the rate of reaction as the enzymes have more kinetic energy, and so they move more quickly and collisions with substrates are more likely. However, if the temperature goes past the optimum temperature – the temperature the enzyme works best at – the bonds holding the amino acids in the enzyme break, causing the enzyme to denature and lose its specificity. Enzymes in the human body generally work best at around 37 °C – this is also the normal body temperature for a human. The pH can also affect the rate of enzyme activity. If the pH is too high or too low for an enzyme, it can interfere with the bonds holding the enzyme together. Therefore, the active site can change and so denatures the enzyme. All enzymes have an optimum pH in which they work best at. 7 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu Another major factor of enzyme activity is substrate concentration. If the substrate concentration is initially increased, the rate of an enzymatic reaction also increases. This is because since there are more substrates, there is a more likely chance that an enzyme can form an enzyme-substrate complex with it. However, if the substrates are too concentrated, then the active sites of enzymes will be full, and no more substrates can be catalysed or synthesised with them, therefore there is no increase in the rate. 1.10 - 1.11) Core Practical Effect of pH on Enzyme Activity This practical investigates how pH affects the enzymatic activity amylase, a carbohydrase enzyme. You will need: iodine solution, a spotting tile, a water bath / Bunsen burner with heatproof mat, tripod and gauze, a beaker, distilled water, syringes, amylase solution, buffer solutions of different pH, a boiling tube, a stop clock, and a dropping pipette. • • • • • Put a drop of iodine solution into every well of a spotting tile. Place a Bunsen burner on a heat-proof mat, and a tripod and gauze over the Bunsen burner. Put a beaker of distilled water on top of the tripod and heat the water until it reaches the optimum temperature of the amylase you are using. Alternatively, use a water bath. Use a syringe to add 3 cm of amylase solution and 1 cm of a buffer solution with a pH of 5 to a boiling tube. Next, use a different syringe to add 3 cm of a starch solution to the boiling tube. 3 3 3 8 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu • Immediately mix the contents of the boiling tube and put into a water bath (or in a beaker if using a Bunsen burner) and start a stop clock. • Every 30 secs take a sample from the beaker and place it in the wells. When it stays brown, orange, no starch is present Calculate rate of reaction by doing the amount of substance / time taken! Carbohydrates, proteins, and lipids are big and complex biological molecules, which are essential for life. Organisms need to be able to break them down into smaller and simple molecules, so that they can be used for growth and other life processes. These breakdown reactions are catalysed by enzymes. For example, the molecules in the food we eat are too big to pass through the walls of our digestive system, and so digestive enzymes break them down into smaller, soluble molecules. These can now pass through the walls and be absorbed into the bloodstream. Organisms also need to be able to synthesise carbohydrates, proteins and lipids from their smaller components (monomers) to their complex molecules (polymers). Synthesis enzymes are used for these reactions. Carbohydrates can be synthesised from simple sugars. Proteins can be synthesised from joining amino acids. Lipids can be synthesised from fatty acids and glycerol. Different types of digestive enzymes (hydrolases) catalyse the breakdown of carbohydrates, proteins, and lipids. Carbohydrases convert carbohydrates into simple sugars. Examples are amylase with starch, maltase with maltose and lactase with lactose. Proteases convert proteins into individual amino acids. Examples are pepsin, trypsin and chymotrypsin. Lipases convert lipids (or more specifically, triglycerides) into fatty acids and glycerol. An example is human pancreatic lipase (HPL) which breaks down dietary fats 9 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu Testing for substances 1.13B) Food can be tested for specific substances e.g reducing sugars like glucose or proteins. This is how it can be done! Benedict’s Test Benedict’s test: Sugars are classed into reducing sugars and non-reducing sugars. You can use Benedict's test for both. For reducing sugars, you’ll need a food sample, a test tube, Benedict’s reagent and a water bath. • Transfer some of the food samples to a test tube. • • • • • Prepare a water bath to about 75 °C. Add some Benedict’s reagent to the food sample and put into the water bath. After a few minutes, take the test tube and examine its colour. • Benedict’s test is semi-quantitative, so there is a range of colours depending on how much reducing sugar is present. It goes from blue (nothing) to green (little) to orange (some) to red (lots). For non-reducing sugars, you can do the same method as above, but you need to hydrolyse the sugar first. Add dilute hydrochloric acid, put it into the water bath, take it out and then add sodium hydrogen carbonate. This hydrolyses the sugar and then you can use Benedict’s as normal. The results should be the same colours as the reducing sugars Starch is a non-reducing sugar, however it reacts with iodine. For the iodine test, you’ll need a food sample, a spotting tile, distilled water and iodine solution. • Place some of the food samples on a spotting tile. • Add some distilled water to the food sample to create liquid. • Add some iodine solution to the liquid. If starch is present in the food sample, it will become blue-black. If not, it will remain brownorange. 10 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu Biuret Test Proteins can be tested using the Biuret test. For the Biuret test, you’ll need a food sample, a test tube, potassium hydroxide solution and copper(II) sulfate solution. • Transfer some of the food sample to a test tube. • Add a few drops of potassium hydroxide solution to make the solution alkaline. • Add a few drops of copper(II) sulfate solution. If proteins are present, then the food sample will change from blue to pink / purple. Otherwise, the food sample will stay blue. Ethanol Emulsion Test You can test for the presence of lipids (fats and oils) using the emulsion test. For the emulsion test, you’ll need a food sample, test tubes, ethanol and distilled water. • • • • Transfer some of the food samples to a test tube. Add some ethanol to the test tube. Shake the test tube well for 1 minute until the test substance dissolves. Pour the solution into another test tube containing some distilled water. If lipids are present, a milkywhite emulsion will form on top of the liquid. If there are lots of lipids in the food sample, the milky whiteness of the emulsion will be more noticeable. 11 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu 1.14B) Food can be burnt to see how much energy it contains. The energy is released as heat. This is called calorimetry. Calorimetry can be done in the lab. You’ll need dry food, a mounted needle or tongs, a boiling tube, distilled water, a clamp stand, a thermometer, a Bunsen burner and a scale. • • • • • • Pour cold distilled water in a boiling tube. Record the starting temperature of the water with a thermometer. Record the mass of the food sample with a scale. Hold the food sample with a mounted needle and heat it with a Bunsen burner until it catches fire. Heat the cold water using the flame from the food sample. Record the final temperature of the water. Use the equation below to calculate the energy transferred: Energy transferred = mass of water x temperature change x 4.2 Use the equation below to calculate the energy per gram of the food burnt: Energy per gram = energy transferred / mass of food 12 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu Transporting Substances 1.15-1.17) Diffusion is the spreading out of particles from an area of higher concentration to an area of lower concentration, down or along a concentration gradient. It happens in both liquids and gases – this is because the particles are free to move about randomly. Diffusion is a passive process – it doesn’t require energy to work. Cell membranes hold the cell together but also control the transport of molecules in and out of the cell. They are partially permeable – small molecules can diffuse through the membranes (such as oxygen, glucose, and water), but large molecules cannot (such as proteins and starch). Just like diffusion in air, particles flow through the cell membrane from a higher concentration to a lower concentration. As they move randomly, particles can flow in both horizontal directions, but if the concentration gradient is steep, a net movement of particles in one direction will be more likely. Osmosis is a special type of diffusion involving water molecules. It is the net movement of water molecules from a higher water concentration to a lower water concentration, across a partially permeable membrane. Like diffusion, osmosis is a passive process. The water molecules pass both ways through the membrane in osmosis, as they move randomly. But if the concentration gradient is steep, a net movement of water molecules is more likely. A solution with a high-water concentration will have a low solute concentration, and a solution with a low water concentration will have a high solute concentration. The net movement of particles in osmosis will cause a solute concentrated solution to be more dilute. The solution surrounding a cell will usually have a different concentration to the fluid inside the cell. This means that water will either move into the cell from the surrounding solution, or out of the cell, by osmosis. If a cell is short of water, the solution inside it will become quite concentrated with water. This usually means the solution outside the cell is more dilute and so water will move into the cell by osmosis. If a cell has lots of water, the solution inside it will be less dilute, and water will be drawn out of the cell and into the fluid outside by osmosis. 13 Biology: Unit 1 - Key Concepts written by Faran Ahmad, edited by Ken Tu Active transport is the movement of particles against a concentration gradient (i.e. from an area of lower concentration to an area of higher concentration) using energy transferred during respiration (ATP). Active transport is different from diffusion because particles are moved against or up a concentration gradient (i.e. from an area of low concentration to an area of high concentration), and the process requires energy, so it is an active process. It allows cells to absorb substances from very dilute solutions. Active transport is also useful in plants, e.g. to absorb mineral ions from the soil. Core Practical - Osmosis in potatoes: Plant cells gain and lose water by osmosis. You can investigate how changing the concentration of the solution surrounding the cell affects osmosis. To investigate osmosis, you’ll need: a potato, a cork borer, a scale, 6 beakers, a waterproof pen, 6 salt solutions from 0% to 5%, forceps and paper towels. • • • • • • • Using the waterproof pen, label each beaker with the name of one of the solutions. Cut 6 potato strips from a potato with a cork borer. Dry each potato strip carefully by blotting it with a paper towel. Measure its mass on the scale. Place the potato strip into one of the beakers. Record the label on the beaker and the mass of the strip in your results table. Repeat steps 3 and 4 until all strips have been measured and placed in beakers. Carefully fill each beaker with the appropriate solution, so that the potato strip is fully covered. Leave the potato strips in the salt solutions for at least 15 minutes. For each potato strip, use the forceps to remove it from its solution, blot dry on a paper towel and measure its mass again. Record all the masses in the results table. 14 Edexcel GCSE Biology: Unit 2 - Cells and Control written by Ohm Joshi, edited by Ken Tu Mitosis Mitosis is one of the processes of cell duplication, where one cell and all of its properties divide into two genetically identical diploid daughter cells. (Diploid cells are cells with 2 set of chromosomes and almost all cells are diploid apart from gametes/sex cells which are haploid). First interphase occurs, then mitosis which includes 5 stages: • Interphase: Subcellular parts of a cell (mitochondria, chromosomes, etc) in the nucleus are duplicated. • Prophase: The membrane of the nucleus begins to break down and spindle fibres appear on either side of the cell. • Metaphase: The nucleus has fully broken down and the chromosome copies line up on either side of the cell along the spindle fibres. • Anaphase: The chromosome copies are then separated and move to either side of the cell along the spindle fibres. • Telophase: A membrane begins to form around each pair of chromosomes on either side of the cell to form nuclei. • Cytokinesis: The cell surface then forms a membrane between the two halves and separates it, causing the one cell to now become two genetically identical daughter cells. Cancer is when a cell begins to divide uncontrollably as a result of a change in the cell, which over time can create lumps of cells called tumours which damage the body and result in death if not able to be treated. 15 Edexcel GCSE Biology: Unit 2 - Cells and Control written by Ohm Joshi, edited by Ken Tu Growth Mitosis is used in growth of organisms, defined as ‘an increase in size as a result of increase in number of cells’ which would be as a result of mitosis. Growth in animals occurs by cell division and then cell differentiation/specialisation, where cells change their shape and parts according to their functions in the body. Growth in plants occurs by cell division, differentiation and then elongation at the meristems, where the cells in a plant continually increase in length throughout their lives. Asexual reproduction is when an organism produces genetically identical offspring also known as clones without the requirement of a partner, meaning asexual reproduction relies on mitosis. Percentile charts are used to monitor growth of new-born babies for the first 12 months of life to compare their growth rates alongside the rest of the new-born population and place them on a percentile. To be on a specific percentile means to have that percentage of babies as smaller than them (25th percentile means 25% of babies are less heavy, 70th percentile means 70% of babies are less heavy). Stem cells are cells which divide continuously and can differentiate into specialised cells. They are initially undifferentiated. These are found in the meristems of plants and can continually specialise and elongate for the rest of the plant’s life. Embryonic stem cells (ESCs) are the stem cells in an embryo, formed after the female egg cell is fertilised with the male sperm cell. ESCs can differentiate into any type of specialised cell. Adult stem cells are limited specialised cells which can only differentiate to specific cells which are in the surrounding tissues, only for replacing damaged cells. ESCs could possibly be cultured or extracted from embryos (which is seen as unethical as you would have to kill the embryo) to treat many diseases which damage and destroy cells. However, ESCs could continue to divide inside a new body and lead to cancer, as well as the body seeing the foreign ESCs as a threat and be killed off by the immune system, called rejection. 16 Edexcel GCSE Biology: Unit 2 - Cells and Control written by Ohm Joshi, edited by Ken Tu The Brain and the CNS The brain is made up of millions of nerve cells/neurons which run through the entire body to send signals and information up and down. 3 main parts of the brain include: • • • The cerebral cortex at the front, separated into 2 cerebral hemispheres controlling the body. The left hemisphere controls the right side of the body while the right hemisphere controls the left side. It is responsible for controlling most of our senses, language, memory, behaviour and consciousness. The cerebellum at the bottom of the brain is also separated into two halves, each controlling balance and posture, as well as fine tuning muscle activity and making movements smoother. The medulla oblongata connects the spinal cord to the brain and controls heart rate, breathing and reflexes such as sneezing, swallowing and vomiting. The spinal cord is a large bundle of nerves which carry information across the body to the brain. Brain and Spinal Cord Problems Scans allow for the brain to be remotely observed without having to perform surgery. CT scans show shape and structures of the brain by moving an X-ray beam around the head. Detectors on the opposite side measure the absorption of X-rays by the brain to create a clear image which is easily observable. PET scans show brain activity and what parts of the brain are working during certain activities. It is done by injecting radioactive glucose into the patient. Glucose is used in cellular respiration for energy, so the part of the brain which is more active takes in the glucose. The radioactive atoms in the glucose cause gamma rays to be emitted which scanners can detect and the more radiation from one area of the brain, the higher the activity is there for a certain task. Brain and spinal cord damage can cause paralysis (loss of use or feeling in parts of the body) and there is very little that can be done to cure this. Brain tumours are caused by cancer in the brain. This lump of cells can cause parts of the brain to not function as it is being obstructed. Tumours can be killed using radiotherapy (focusing high energy X-ray beams to kill the cells) and chemotherapy (injecting drugs to kill the tumour directly). However, they can harm the 17 Edexcel GCSE Biology: Unit 2 - Cells and Control written by Ohm Joshi, edited by Ken Tu body as well, and chemotherapy could be ineffective due to the blood-brain barrier which only allows certain substances to get from the blood into the brain. Nervous System The Central Nervous System (CNS) is made up of the brain, spinal cord and neurons which allow the body to send information around in the form of electrical impulses. These impulses are created by the detection of a stimulus by the receptor cells in the sensory organs which travel to the brain through neurotransmission along the nerves for the brain to formulate a response. Neurons meet each other at synapses which are tiny gaps and when an impulse reaches the synapses, a chemical substance called a neurotransmitter is released and detected by the next neuron and repeats along the CNS. This is done to slow down neurotransmission and to allow for impulses to travel in the correct direction. The different types of neurons have different functions. • • • The sensory neuron carries impulses to and from the receptor cells and brain. Impulses enter the neuron by the dendrites, travel along the dendron, through the axon and out to the next neuron by the axon terminals. They are surrounded by a layer called the myelin sheath which allows the impulse to travel along one neuron and prevent it from jumping to others, as well as insulating it to maintain speed of transmission Motor neurons carry impulses towards effectors (after the brain creates a response to a stimulus, it sends it to an effector to carry out that response). Relay neurons found in the spinal cord link up the motor and sensory neurons, as well as play an integral part in the reflex arc. In the diagram on the right, it refers to the relay neuron as an interneuron. Reflexes are actions which are taken by the body without having to think about it. It may be used to avoid harm, or it may be a natural bodily function (sneezing/swallowing). Reflexes do not need to be thought about so the impulses bypass the route to the brain. The impulse travels along the sensory neuron, onto the relay neuron at the spinal cord and then to the motor neuron to the effector to carry out what must be done to prevent harm to the body (example: pulling your hand away from a fire. Receptor cells feel pain, send an impulse, travel along the reflex arc, travel to the effector, muscle moves, pulling the arm away). 18 Edexcel GCSE Biology: Unit 2 - Cells and Control written by Ohm Joshi, edited by Ken Tu The Eyes The eyes are sense organs which allow for sight. Two types of receptor cells called rods (which detect light intensity) and cones (which detect colour of light) are found in the eye in a layer called the retina. Light enters the eye through the pupil, found as the dark area in the centre of the eye. The iris controls the amount of light entering the eye. Constricting the pupil (make it smaller) allows less light through, while dilating it (making it bigger) allows more light through. Light rays need to be focused on the retina in order to create a clear image and is done by the cornea which refracts light rays to bring them together. Then the lens fine tunes the focus which are controlled by ciliary muscles which fatten the lens to focus on nearer objects and make them thinner for further objects. If the lens does not change shape correctly, the light doesn’t converge at the retina and vision becomes blurry. Short sightedness (myopia) is when distant objects are blurry and light rays meet before the retina. This can be because the eyeball is too long. Long sightedness (hyperopia) is the opposite, where close objects are blurry and light rays meet after the retina. This can be because the eyeball is too long. This can be fixed by corrective lenses. Short sightedness is fixed by a diverging/concave lens which bends light outward to make light rays meet at the retina. Long sightedness is fixed by converging/convex lenses which bend light towards each other to meet at the retina, and not after it. Cataracts are an eye problem where protein build up makes vision cloudy and can be fixed by replacing the lens with a clear, plastic one in surgery. 19 Edexcel GCSE Biology: Unit 2 - Cells and Control Colour blindness is a sex-linked disorder and causes some cones in the retina to function incorrectly. It is a genetic disorder and cannot be corrected. 20 written by Ohm Joshi, edited by Ken Tu Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu Sexual and Asexual Reproduction Sexual reproduction is the most common method of reproduction involving a the fertilisation of a female gamete (female sex cell). Whilst asexual reproduction produces clones which are genetically identical to the parent without needed another gamete. As with any biological process, there are pros and cons. Asexual Reproduction - Producing new organisms from one parent only. These organisms are genetically identical to the parent. Advantages of Asexual Reproduction Disadvantages of Asexual Reproduction Asexual reproduction can produce lots of offspring very quickly because it does not require another gamete to begin reproduction. There is no genetic variation between offspring in the population. So, change in the environment (like a disease) makes conditions unfavourable leading to a whole population being affected. Only one parent is needed. This means organisms can reproduce when conditions are favourable, without having to look for a mate. Sexual Reproduction - This is where genetic information from two organisms ( a male and female parent) is combined to produce offspring which are genetically different from both parents. Advantages of Sexual Reproduction Disadvantages of Sexual Reproduction Sexual reproduction creates genetic variation within the population which means that everyone has different characteristics. • This means that they are less prone to being entirely wiped out by a change in the environment. Two parents are needed for sexual reproduction. This means that organisms must look for and find a mate in order to produce offspring. Involves meiosis hence it produces genetically Sexual reproduction takes more time and different haploid gametes, which fuse to form energy than asexual reproduction, hence they a diploid cell at fertilisation produce less offspring. 21 Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu Meiosis Meiosis is a form of cell division in which one parent cell produces four haploid daughter cells. • • • • Produces 4 cells Produces genetically varied cells Produces haploid cells Produces gametes/sex cells Gamete Production 22 Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu DNA DNA strands are polymers made up of nucleotides. Nucleotides consist of a sugar molecule, a phosphate backbone and one “base”. The sugar-phosphate groups form a backbone to DNA strands. The bases are A(adenine), T(thymine), C(cytosine), G(guanine). On the right, shows a diagram of the structure of DNA where the dotted lines in between represent the weak hydrogen bonds. The sugar molecule that connects the phosphate backbone to the bases is called deoxyribose although you don’t need to know this for GCSE. Double Helix A DNA molecule is coiled together in the shape of a double helix. Each base links to the corresponding base from the opposite direction strand in the helix. Complementary base pairing A pairs with T C pairs with G The bases are joined by weak hydrogen bonds. A gene is a section of DNA on a chromosome that codes for a particular protein. All an organism's DNA makes up its genome. DNA Extraction For the GCSE Biology specification, you are required to know how to extract DNA from a fruit using the following method: • • • • • Mix a solution of detergent and salt. o The detergent breaks down the cell membranes to release DNA o The salt will make the DNA stick together Add some strawberries that have been mashed to the solution and mix Filter the mixture to get froth and remove the insoluble bits of the cell out Add some ice-cold ethanol to the filtered solution The DNA will come out of the solution as it is not soluble in cold alcohol. It will appear as a stringy white precipitate. This can be taken out with a glass rod. 23 Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu DNA Composition DNA controls the production of proteins in a cell. Proteins are made up of a chain called amino acids. They are the monomers of proteins. The chains fold up to give the protein a different specific shape - hence they each have a different function. A gene is a section of DNA on a chromosome that codes for a particular protein. All an organism's DNA makes up its genome. The amino acids join to make proteins and the different sequences of bases allow it to code for specific proteins. Protein Synthesis This is the process whereby long polypeptide chains (proteins) are formed. Proteins are made in two stages, transcription, and translation. Transcription In transcription, the DNA bases are used to form a strand of RNA (ribonucleic acid). 1. RNA polymerase, an enzyme, binds to regions of non-coding DNA in front of a gene. 2. The two DNA strands unzip and the RNA polymerase moves along one of the strands of the DNA. 3. It uses the coding DNA in the gene to make the mRNA (messenger RNA). As the RNA polymerase moves along the template DNA strand, it adds complementary nucleotides (bases) to the mRNA. Except the T (thymine) base is replaced by another base - a U (uracil) base 4. The mRNA leaves the nucleus through the nuclear pore entering cytoplasm and joins with a ribosome. 24 Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu Translation 1. Amino acids are brought to the ribosome by another molecule called tRNA (transfer RNA). 2. The order of the amino acids matches the base triplets in mRNA (which can be known as codons). 3. The tRNA have anticodons which are complementary to the codons. 4. The amino acids are joined together by the ribosome. This makes a polypeptide chain. Overall, the process can be described as the following: a) RNA polymerase binds to non-coding DNA located in front of a gene. b) RNA polymerase produces a complementary mRNA strand from the coding DNA of the gene. c) The mRNA strand swims into the cytoplasm attaching itself to the ribosome. d) The coding by triplets of bases (codons) in the mRNA for specific amino acids. e) The transfer of amino acids to the ribosome by tRNA. f) The linking of amino acids to form polypeptides. When the protein is formed, its functionality depends on the original gene being correct. If the gene is faulty or experienced a mutation, the mRNA produced will be attached to different codons and therefore a different amino acid will be in the protein causing it to fold up differently. Consequently, the protein formed will be a different shape thus it may not perform its function as effectively as it should. A similar result would reduce the quantity of protein produced if the length of the two non-coding sections of DNA were mutated to be shorter. 25 Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu Mendel Gregor Mendel's (1822-1884) research formed a foundation for the genetics we know today. Mendel crossed plants with different characteristics. He observed the characteristics of the offspring and drew conclusions about the inheritance of characteristics. Mendel's Pea Experiment 1. Mendel crossed two pea plants. One tall pea plant and one short pea plant. The offspring were all tall. 2. He then crossed the offspring with each other and found that they were produced at ratio of tall: short at 3:1 The differences in the offspring are down to the dominant and recessive alleles. Mendel's conclusions 1. Characteristics in plants are determined by “hereditary units” 2. Hereditary characteristics are passed on from generations. 3. These characteristics can be dominant or recessive. In the case that the person has both the characteristics the dominant characteristic is expressed. Below is the terminology used to describe genotypes and phenotypes in the genetics an organism may receive. Chromosome - A thread-like structure found in the nuclei of cells. Each chromosome contains one enormously long DNA molecule packed with proteins. Gene - A section of the long strand of DNA found in a chromosome that often contains instructions for a specific protein. Allele - Most genes come in different versions called alleles. Dominant - Describes an allele that will always affect a phenotype as opposed to a recessive allele, whose effect will not be seen if a dominant allele is present. Recessive - Describes an allele that will only affect the phenotype if the other allele is also recessive. It has no effect if the other allele is dominant. Homozygous - When both alleles for a gene are the same in an organism. Heterozygous - When both the alleles for a gene are different in an organism. Genotype - The alleles for a certain characteristic that are found in an organism. Phenotype - The characteristics produced by a certain set of alleles. Gamete - A haploid cell produced by meiosis used for sexual reproduction. Zygote - A fertilised egg cell. 26 Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu Inheritance A monohybrid (single gene) cross can show the probability of having offspring with certain traits with a Punnett square. Uppercase letters are for dominant alleles and lowercase letters for recessive alleles. The Punnett square demonstrates the probability that an offspring will receive a certain characteristic. Family pedigrees show how alleles are passed down generations. Squares represent males, circles represent females, black shows affected and white shows unaffected. The sex of a child can be represented using a punnet’s square too. Females have two X chromosomes hence they are XX. Males have an X and Y chromosome hence they are XY. As shown below, when the two gametes fuse, there is a 50% chance that they are male or female. Using the on the right, diagram we can see that the XY (probability of a male) is 50% as it only appears 2 out of 4 times. 27 Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu Multiple and Missing Alleles 1. There are multiple alleles that determine blood groups. 2. There are 4 different blood types O, A, B, and AB. 3. The gene for the blood types in humans has only 3 alleles: I I I 4. I I are codominant hence the blood type AB. I is recessive 5. A A B O B O Sex-linked Genetic Disorders 1. A characteristic is sex-linked if the allele is on a sex chromosome (X or Y). To is linked to the sex. 2. The Y chromosome is smaller, so it carries fewer genes than the X chromosome. 3. As men only have one X chromosome, they often only require one allele for sex-linked genetic disorder. 4. Men inherit the X chromosome from mother, and the Y chromosome from father. 5. Women inherit the X chromosome from mother, and the X chromosome from father. Hence for a man to receive a sex-linked disorder e.g., colour-blindness, they only require one allele to be colour-blind. The Punnett’s square for colour-blindness may look like the following. Let B = the dominant allele for non-colour blindness and b = recessive allele for colour blindness. XB Y Xb XBXb XbY Xb XBXb XbY In the example above, the homozygous woman with colour blindness is crossed over with a man who has the dominant allele for non-colour blindness. The probability of a girl being born with colour blindness is 0% whilst the probability of a boy being born with colour blindness is 100% as the Y chromosome has no allele for colour blindness. 28 Edexcel GCSE Biology: Unit 3 - Genetics written by Sulaiman Galaria, edited by Ken Tu Although some characteristics are determined by two alleles, some phenotypic features like eye colour are determined by as many as 16 genes. Hence single gene inheritance is not always the case. There are different factors that can influence phenotype such as the following: Genetic Variation – different characteristics as a result of mutation and sexual reproduction Environmental Variation – different characteristics caused by an organism’s environment for example if you grew up in a poor country with food insecurity, you would lack the nutrients to grow properly. These characteristics created as a consequence of their environment are called acquired characteristics. The Human Genome Project Thousands of scientists have collaborated on the Human Genome Project and was created to find every single human gene. It started in 1990 and ended in 2003 and was able to map 20,500 genes. The project helped to identify 1800 genes related to disease to benefit medicine. Medical Applications • Prediction and prevention of disease o If doctors could identify which gene predisposed people to what diseases, we could get tailored advice on diet and lifestyle and give early treatment. • Testing and treatment of inherited disorder o Due to the Human Genome project doctors can identify faulty alleles in a person's genome. This can help to develop better treatment and cures. • New and better medicines o Scientists can design new drugs specifically tailored to a particular genetic variation. Drawbacks • Increased stress o People can panic if they know they are susceptible to a certain disease • Gene-ism o People with genetic problems could come under pressure to never have children. • Discrimination by employers and insurers o Genetic likelihood of certain diseases can prevent people from getting jobs and insurance (or it will be very expensive) 29 30 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu Natural Selection As time goes on, species of animals can randomly mutate. This is caused by the radiation absorbed from a wide variety of sources such as the background radiation from small amounts of Uranium in rocks to the Sun projecting its UVA (ultraviolet) and UVB rays. These mutations cause minute differences (genetic variation) in the characteristics of that species. Some are more advantageous than others. The species that receive an advantageous genetic variation is more competitive in seeking food/hunting prey or resistant to a particular pathogen. So the weaker species dies out leaving the species with the advantageous genome higher in population. When that species then breeds, the genes are passed on from offspring to offspring resulting in the large majority of that species having the superior gene. Hence the species is naturally selected i.e higher in population by the weaker species dying out. During the 18th Century, Charles Darwin (1809-1882) and Alfred Russel Wallace (1823-1913) came up with this idea. In essence you can think of this in four stages: Genetic Variation: the characteristics of individuals in the species alter due to random changes in DNA. Competition/Environmental Changes: changes in the environment may have allowed one genetically varied species to compete more effectively against other organisms. Natural Selection: by chance, the variations made on species better at surviving whilst the weaker species with inferior adaptations did not survive AKA “survival of the fittest”. Inheritance: the survivors will breed and pass on their heredity (genetic information). Evolution: this whole process occurs over and over again over millions of years where species evolve with more advantageous traits pertaining to whatever difficult environment the species migrate to. Modern scientists now use this idea of evolution to demonstrate how a species shared a common ancestor. Resistance Organisms In the 1960s, scientists discovered bacteria which evolved to have a strain of genetically resistant DNA, meaning the bacteria with this DNA would not be affected by antibiotics. This genetic variation would increase the number of species of those bacteria with that trait. As a result, this increased the number of resistant bacteria. The genetically resistant bacteria continue to pass this gene on rendering antibiotics ineffective as they reproduce and spread, most likely causing more infections if pathogenic. The emergence of resistance organisms supports Darwin's idea of Natural Evolution as by chance, the random mutation in DNA led to the strongest (the species most likely to survive) bacteria increasing in population and evolving. 31 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu Evidence for Human Evolution As evolution is the gradual change in the characteristics of an organism over time, scientists discovered fossils which indicate how the human has evolved over eons. Although the fossil record is complete. There are species missing which would indicate more of the ancestry of humans. This could be because they are yet to be found or the environmental conditions for fossil formation may not be right. You are required to know the following ancestors of homo sapiens (human species). Name of Fossil Age Characteristics Ardi 4.4 million years ago 1.2m tall; leg bones show she could walk upright; long big toes allowing her to climb trees. Lucy 3.2 million years ago 1.07m tall; she could walk upright - her toes were curved similar to modern humans. Leakey’s discovery of the homo habilis (2nd most recent human ancestor) 2.4-1.4 million years ago Short with long arms but walked upright. Ardi and Lucy were the names given to the fossils found from the Scientist's discovery. In the 1960s, Mary Leaky and Louis Leaky found the homo habilis fossil. Australopithecus africanus – Lucy 32 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu Homo habilis was just before the time period of the homo erectus. Ardi existed between the period of Lucy and the Ape (Sahelanthropus tchadensis). It is also believed that humans evolved from Apes. As both species have tails of some sort. The human coccyx resembles the longer tail of an Ape. As humans evolved from Apes, we became more intelligent. The skull volume increased from the original Ardi (350cm ) to the Homo sapiens (1450cm ). Subsequently the way humans hunted for prey evolved. We began to use stone tools. Minecraft, I know right! 3 3 As tools in the diagram progress to the left, the stone tools become sharper and sharper. This is also indicative of the time. Older ancestors of humans had more blunt tools whilst the closer ancestors used tools which were sharper. When the tools were often used for hunting prey. The blunt rock could be used to crush animals whilst the sharper stones would be used as an arrowhead. Development of Darwin’s Theory Context: in 1838, Darwin read an essay by Thomas Malthus (1766-1834), an English Economist, which argued that if people gave birth to many children, this could result in food shortages as more children needed more food, provided that the supply of food does not increase of course. This would result in a struggle for survival which only the genetically strongest could survive. This gave Darwin the idea that when 33 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu organisms produce many offspring, only those individuals best suited to the environment would survive thus reproducing and passing on their genes. Many people during Darwin’s time (19th Century) believed that a God created all of Earth’s species, including their characteristics and that they could not evolve. However, in 1835, Darwin visited the Galapagos Islands where he noticed different characteristics of the mockingbirds on the different islands. They were close geographically and held similar characteristics but minute differences e.g., beak shape. Long story short Darwin published a book called On the Origin of Species and towards the end he considers the evolution of vertebrates (animals with a spine) who all have five fingers - a pentadactyl limb. Essentially the idea behind the existence of the pentadactyl limb is to support how all these vertebrates have similarities: a Radius and Ulna connecting to a Humerus with five fingers (Phalanges) which must mean that at one point, they shared a common ancestor and evolved into their various species from then. Classification in Genetic Analysis In 1735, a Swedish Zoologist named Carl Linnaeus published his classification system - how he thought different animals/species should be divided. He classified the species based solely on the physical characteristics of each animal. NOT considering their genetics. He would create only two kingdoms of classification whilst in the modern days, we now have five kingdoms: animals, plants, fungi, protists, and prokaryotes (cells with no nuclei). Of course, with Linnaeus’ original model there were problems that arose where although two species had evolved similar characteristics e.g., an elephant and a polar bear, they both have four legs, they were not closely related in terms of their genetic information. Here is a table to demonstrate the main characteristics of each kingdom: Context: 34 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu Kingdom Main Characteristics Animals Multicellular organisms where cells are arranged to form tissue and organs, cells have nuclei but no cell walls. Plants Multicellular organisms where cells are arranged to form tissue and organs, chloroplasts for photosynthesis, cells have nuclei with cell wall made from cellulose. Fungi Multicellular, live on dead matter which they feed off of, cells have nuclei, cell walls contain chitin not cellulose Protists Unicellular, the cells have nuclei and cell walls. Prokaryotes Unicellular, no nuclei and flexible cell walls. However, after microscopes were invented, scientists discovered the genes of plant and animal cells and found that Archaea genes (unused section of DNA - most DNA is used to produce proteins, but the “unused” section doesn’t help with this) existed. This led a scientist named Carl Woese (1928-2012) to propose the system of classification into three domains: • • • Archaea (prokaryotes but distinct from bacteria); cells with no nucleus, genes contain unused sections of DNA. Bacteria: cells with no nucleus, no unused sections of DNA, no Archaea genes). Eukarya: cells with nucleus, had unused sections of DNA, and had Archaea genes. Selective Breeding Some species adapt to the environment to form characteristics which, by chance, benefit them. Artificial selection is where humans will choose certain organisms to breed with each other. This causes the offspring to have characteristics which humans may desire in a species e.g they bred a white thick-wooled sheep with a black sheep to produce an offspring to be black and thick-wooled. By repeating this process over and over, over the course of years, they will end up with the species with the desired characteristics. Hence by breeding animals this way, it is called selective breeding. A strong real-life example of selectively bred animals are hybrid dogs. The dog breeder will breed two different dogs to produce a puppy with qualities from the mother and from the father. The same selective breeding technique can be implemented in the plants where breeders will cross breed crops to produce plantlets which will grow and have qualities of both parents. This can be useful if one parent plant has a stronger disease resistance system than the other. Plants and animals may be selectively bred to produce the subsequent results: 35 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu • • • • Crops with a higher disease resistance defence system against pathogens/pests. Yield, selectively bred fish may produce offspring which grow more than normal. Flavour. To have higher survival rates within their given environment. However, selectively breeding animals may not always be a good thing. In the case of dogs, many pugs (a species of dog with a flat face) suffer from health problems such as brachycephalic obstructive airway syndrome (BOAS) breathing problems caused by their cute but squished noses or a range of eye problems such as dry eyes. These are at the detriment of the pug’s life, yet humans desire these cosmetic features as they’re deemed cute. This can be argued as unethical. Tissue Culture Tissue culture is the cultivation of tissue. Essentially you are growing/reproducing the group of cells in a controlled environment. Often the new tissue is placed in a liquid solution which contains all the nutrients to allow the new tissue to grow. Sometimes this source of nutrients can be solid medium such as nutrient agar. When the cells divide and grow into many identical cells, this can form a callus (a clump of undifferentiated cells). Hormones or different forms of treatment can be introduced to the cells to cause them to differentiate and specialise. The photo on the right shows many plant clones produced. Clones of the same cells can be used to produce new plants which are at risk of extinction. It is also used to produce plants which may be difficult to have grown only from a seed, such as orchids. 36 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu The following steps describe how a tissue culture is grown. 1. A piece of the plant such as the root, is cut off. The root contains the meristem cells which are undifferentiated. 2. The cells are placed into a nutrient medium to grow. These are aseptic conditions (sterile) to prevent the growth of unwanted microorganisms as they may compete for nutrients. 3. Although sometimes only a few cells are cut off and placed into the nutrient medium to grow into a callus which will then be treated with hormones, similar to the description in point 2, so they develop into roots and shoots. 4. When the plantlet grows large enough, they can be moved into soil/compost to grow. Tissue culture also has its applications in medicine. By culturing a thin layer of cells onto a solid medium agar, scientists can more easily experiment with how cells communicate with each other. For context, Nobel Prize winners for Medicine in 2019 were given to three Scientists who discovered how cells sense and adapt to the availability of oxygen. This was using tissue cultures. Cell structures may also be used to study viruses, which require a host i.e cannot replicate outside of a cell, whereby scientists can investigate how infected cells will respond to new medicines without harming/risking harm to real animals or humans. Tissue culture may also be developed into real functioning organs if correctly supported by the right conditions, e.g., tissue-engineering a synthetic windpipe. 37 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu Genetic Engineering Genetic engineering involves directly altering the DNA of an organism by inserting or taking out genes from one species to another. This organism with its DNA genetically modified is called a genetically modified organism (GMO). Often this is done to produce an organism with more desirable attributes such as higher yield, stronger defence system against pathogens/pests or possibly for the organism to produce extractable insulin that can be used to treat diabetic patients. How an organism(bacteria) is genetically engineered can be described as the following: 1. A bacteria’s DNA is one large loop (chromosomal DNA). Some of its DNA is in smaller loops called plasmids. 2. A section of the chromosomal DNA or plasmid is cut by using restriction enzymes. 3. Which leaves a few unpaired bases at the end of the chromosomal DNA to which a new DNA strand can be inserted into and bond to the unpaired bases. 4. Once the new DNA strand is inserted the complementary bases from the new DNA and the chromosomal DNA pair up and an enzyme called a ligase is used to join the strands of DNA together again. 5.The new DNA is called the recombinant DNA which is inserted back into the bacteria cell. The insertion of the recombinant plasmid DNA can also be referred to as a vector because it carries new information into the cell. Selective Breeding Risks and Genetic Engineering Issues As with any process, there are the advantages and disadvantages. Selective breeding may reduce genetic diversity. As genes are divided into alleles, with selective breeding there is a higher prevalence of one particular allele whilst others may become scarce and rare. These genes/alleles which would have been useful in the future are no longer available. This can impact the biodiversity of different species so if conditions change e.g., a new pathogen is introduced, then entire species will die as the selective breeding has led to a species with a major, single weakness that affects every organism. 38 Edexcel GCSE Biology: Unit 4 - Natural Selection and Genetic Modification written by Ken Tu Genetic Engineering and Agriculture GM crops have been genetically modified to be resistant to insects therefore less insecticide is required to kill the insects as they no longer affect the yield of crops. Other crops may be genetically modified to be resistant to weed killing herbicides which then kills weeds but not the crops. So, less herbicide is required for maintenance. In the 1900s, a soil bacterium (Bacillus thuringiensis) was discovered to produce a natural insecticide called Bt toxin. What’s great about genetically modifying crops to contain this gene producing Bt toxin, is that crops will begin to naturally secrete this. The toxin was only released if pests/insects ate the crop as the toxin is only released when cells are broken. This differs from insecticide because that kills a whole range of insects including ones which do not feed on the crop. However, this can lead to problems with an increase in insects which are resistant to the Bt toxin. Luckily, the Bt toxin has many different strains (varieties) which all produce slightly different toxins allowing the toxin to still impact the insects. GM bacteria can be genetically modified to insert an insulin producing gene which can allow bacteria to produce insulin available for extraction and use on diabetic patients. This can be great because it's cheaper and suitable for ethical/religious reasons as insulin, previously, used to be extracted from cows/pigs. Fertilisers and Biological Control As mentioned before, sometimes insecticide is used to control the number of pests feeding on crops. So, to solve this problem farmers may introduce organisms to control pests. This is an example of biological control whereby new organisms are introduced to control populations levels of others. Biological control can reduce the level of weeds by introducing a species of insect that can consume weeds. Fertilisers are of supplementary nutrients to crops. This may include compounds which have nitrogen, phosphorus, and potassium in them as they help a plant grow therefore increasing yield. However, a negative effect this can have is that if excess fertiliser is used, and not all the nutrients are absorbed by the crop, the nutrients can be absorbed by algae in the river as the excess nutrients wash up into the river. See Unit 9, Ecosystems for this in further detail. 39 40 Edexcel GCSE Biology: Unit 5 - Health, Disease and the Development of Medicines written by Oluwadamilola Olatunji, edited by Ken Tu What is Disease? At the beginning of this topic, the most important thing to understand is the definition of health. Heath is a state of complete physical, mental and social wellbeing and not just merely the absence of disease. Communicable and Non-Communicable Diseases There are two types of diseases: non-communicable and communicable diseases. Noncommunicable diseases are diseases that cannot be passed from person to person, often inherited via genetics or one's lifestyle, while communicable diseases can be spread through microorganisms called pathogens. The types of pathogens are viruses, protists, bacteria and fungi. Diseases can be correlated, meaning having one disease can lead to having another. This is because: • One disease damages the immune system, making it easier for other pathogens to cause disease • Diseases also damage the body’s natural barriers and defences, allowing pathogens to get into the body more easily • Diseases stop organ systems from working effectively, making other diseases likely to occur The idea that a person can be more susceptible to another disease as they contract one can be seen in examples such as HIV (human immunodeficiency virus) leading to AIDS (acquired immunodeficiency syndrome) where the viruses will infect and attack the immune system. The progressive failure of the immune system allows life-threatening, opportunistic infections to thrive. There are several types of non-communicable diseases. One type is genetic disorder which is caused by faulty alleles in the genes. These are non-communicable diseases as they can only be passed onto offspring. Non-communicable diseases can also be caused by a poor lifestyle such as malnutrition, exercise amount or obesity. An example of this is cirrhosis, caused by large amounts of alcohol consumption impairing the liver’s functionality. 41 Edexcel GCSE Biology: Unit 5 - Health, Disease and the Development of Medicines written by Oluwadamilola Olatunji, edited by Ken Tu Cardiovascular disease Another example of a non-communicable disease is cardiovascular disease. This is caused by the circulatory system functioning poorly due to large amounts of fat in the body. To measure the amount of fat in the body you can use either the body mass index (BMI) or the waist-to-hip ratio. For body mass index, you use the equation: If a person’s BMI is above the value of 30 they are considered obese. Obese people are more likely to develop cardiovascular disease as they have a disproportional amount of fat in comparison to their height. For waist-to-hip ratio you divide the measurement around the waist by the measurement around the hip in order to receive a better measurement of how much fat is in the abdominal area of the patient. Waist-to-hip ratio is a more accurate measurement of a person’s health as BMI does not account the amount of muscle mass in the body and assumes the mass is all fat. In addition waist-to-hip ratio indicates that the fat is not located around the vital organs such as the liver. Cardiovascular disease can also be caused by smoking. Tobacco smoke contains carcinogens that can damage the lungs when breathed in. The smoke damages the arteries, causing cholesterol (fat) to build up at the damage site which makes the arteries narrower. This eventually leads to blood clots and blockages, causing heart attacks or strokes. 42 Edexcel GCSE Biology: Unit 5 - Health, Disease and the Development of Medicines written by Oluwadamilola Olatunji, edited by Ken Tu Treatment to Cardiovascular Diseases Treatments to cardiovascular disease include: • More exercise • Give up smoking • Inserting a stent (A small mesh tube that wides arteries in order to help blood flow) • Inserting new blood vessels in order to create more paths for blood Communicable Diseases For the GCSE Biology, you need to be able to describe certain diseases, what they’re caused by and how they are spread, such as: • Cholera, caused by bacteria, causes diarrhoea, and spreads in water. • Tuberculosis, caused by bacteria, causes lung damage, and spreads through air. • Chalara die ash back, caused by fungi, causes leaf loss and bark lesions, and spread through air. • Malaria, caused by protists, causes damage to the T-lymphocytes and liver, and spread by animal vectors. In this case, the vector is a mosquito. • Stomach ulcers, caused by bacteria (Helicobacter), spread through oral transmission. • Ebola, caused by viruses, causes haemorrhagic fever (basically imminent death lol [vascular system fails and the body cannot repair itself] ), and spreads through exchange of bodily fluids. Viruses are not true organisms as they have no cellular structure. They multiply, infecting cells with their genetic material in order to create new viruses and kill cells. Bacteria release toxins and rapidly multiply within the body, paralysing cells with the toxins and overwhelming cells and tissues with their vast population. Protists bind onto the lining of the small intestine, preventing the host from absorbing nutrients. Fungi cause plant cells stress and/or kill plant cells. Virus Life Cycles Viruses have many different forms but have a few features in common. All viruses have one or more strands of genetic material surrounded by a protein coat (capsid). 43 Edexcel GCSE Biology: Unit 5 - Health, Disease and the Development of Medicines written by Oluwadamilola Olatunji, edited by Ken Tu Viruses have two different ways of infecting the body: the lytic and lysogenic cycle. The lytic cycle has 4 steps: 1. The virus hijacks the cell, injecting their genetic material into the cell. 2. The viral DNA inserts itself into the cell's DNA. 3. The cells begin to create viral genetic material and assemble it. 4. The new virus lyses(bursts) out of the cell, killing it. The lysogenic cycle has 3 steps: 1. Virus hijacks the cell, injecting their genetic material into a bacterium. 2. Viral DNA inserts itself into the bacterial chromosome. 3. Bacteria reproduce, replicating viral genetic material Physical and Chemical Barriers The body has various ways of defending itself against diseases through means of chemical barriers or physical barriers. For example the body’s skin acts as a physical barrier to prevent diseases from entering our organs and the gastric (hydrochloric) acid in our stomach to kill any pathogens we may consume. Plants have a waxy cuticle which acts as a physical barrier, making it difficult for pathogens to enter the cells beneath. Other plants have chemical defences such as poisons or insect repellents in order to stop insects from coming near the plant. These chemical barriers have been used in medicines such as aspirin to control certain symptoms of pain or fever. Plant Diseases Plants show signs of stress when conditions are not good for growth, such as when there is an incorrect amount of water, when the soil lacks nutrients or when plants are attacked by pets or diseases. 44 Edexcel GCSE Biology: Unit 5 - Health, Disease and the Development of Medicines written by Oluwadamilola Olatunji, edited by Ken Tu First you must look at the visible symptoms on the plants. This includes changes in growth, changes in colour/blotching of leaves and/or lesions on leaves. Next you need to do a distribution analysis to see where the damaged plants are occurring. This allows farmers to see what might be causing disease. For example, flooding or lack of soil nutrients causes similar symptoms in a certain area. Wind will cause widespread symptoms. Soil pathogens will only affect a very small area. After this, the farmer will do a final analysis in the lab using equipment in order to look for pathogens in the plants and send off these reports and soil samples to labs to decide what the issue is. Physical Barriers The bodies physical barriers include the skin, which is very thick, meaning pathogens can only cross it through wounds or animal vectors that pierce it Chemical Barriers Chemical barriers include lysozymes on the skin’s surface which break down the walls of bacteria in order to make them inactive. We also have acid in our stomach (HCl) that has a very low pH meaning some pathogens can’t survive in the acid. Mucus is sticky secretion produced by cells in order to catch pathogens that enter the body. Finally, the body has ciliated cells and goblet cells which catch and sweep pathogens out of the body. The Immune System Most cell surfaces have proteins called antigens that can be used by the immune system to find and kill pathogens. White blood cells called lymphocytes have antibodies on the surfaces of their cells that match the shape of certain antigens. Once they find the complementary antigen, they become activated, either releasing more antibodies or dividing to produce more antigens with the antibodies necessary to kill the pathogens containing the complementary antigens. After the initial infection, memory lymphocytes are created which stay dormant in the body. If the same kind of pathogen re-enters the body the secondary response will be faster, meaning the pathogens can be killed much quicker. 45 Edexcel GCSE Biology: Unit 5 - Health, Disease and the Development of Medicines written by Oluwadamilola Olatunji, edited by Ken Tu As shown in the diagram on the right, the first infection (first antigenic challenge) shows a smaller amount of antibodies produced (antibody titre[IgM & IgM]) whilst during the second response, many more antibodies are produced to overwhelm the pathogen. Immunisation Vaccines contain weakened or dead pathogens with the pathogen’s antigens. This gets injected into the person’s body and causes the corresponding antibodies and memory lymphocytes to be produced which will stay in the body and protect it from the disease for years. There is also herd immunity, where most of the population is immunised. This means that the few people who aren't immunised have a very low chance of catching the disease as they have a low chance of encountering someone else who has the virus. Sexually transmitted diseases STIs (sexually transmitted infections) such as chlamydia are spread through contact with bodily fluids such as semen or vaginal fluid. This type of transmission is prevented by stopping fluids from being exchanged using condoms or other artificial barriers. Screening can also be used in order to check if you have a sexually transmitted disease. Antibodies are proteins that either kill bacteria or inhibit their cell processes, which stops them from growing or reproducing. They don't influence viruses however as they only affect the cell processes of bacteria. Development of medicines For medicines to be industrially used, it must be safe to use. Here are the following steps a medicine supplier will do to produce medicine. The discovery of penicillin - the first antibiotic was found by Alexander Fleming. Stage 1: Pre - Clinical trial - Medicine is tested on tissue samples and cells in agar plates in order to test their side effects to see if any unintended or harmful effects are produced. It is then tested on animals to see how it works in a whole body without risks to humans. Stage 2: Clinical trial - Medicine is now tested on a small number of healthy people to see if it is safe and any other side effects not shown by the previous test. Stage 3: Large - Clinical trial - Medicine is now tested on many people who have the disease to work out the dosage as well as a final check for side effects the medicine has. 46 Edexcel GCSE Biology: Unit 5 - Health, Disease and the Development of Medicines written by Oluwadamilola Olatunji, edited by Ken Tu Antibiotics Practical 1. Use aseptic techniques to pour an agar plate. 2. Carefully open the bacterial culture bottle and pass the neck through a flame. 3. Draw some culture using a sterile pipette before passing the neck of the bottle through the flame and replacing the lid. 4. Lift the lid of the petri dish by a small margin and add the drops of culture, replacing the lid and disinfecting the pipette after. 5. Spread culture over agar and replace lid. 6. Mark sections on the dish and use sterile forceps to place each antibiotic disc on the plate, sterilising after every disc. 7. Tape lid on and incubate. 8. Now measure radius of each zone of inhibition, the radius in which no bacteria formed from the antibiotic discs, to work out the effectiveness of each antibiotic Aseptic techniques are techniques used during practicals to make sure that all equipment used is still sanitary and clean, reducing chances of infection. Examples of this include: • • • • • • Using an autoclave (uses steam under pressure to kill bacteria) Working in the environment of a Bunsen burner Wearing gloves Using disinfectant on all items after use Using sterile equipment Closing and taping agar plate to prevent pathogens escaping Monoclonal Antibodies Monoclonal antibodies are artificial antibodies created in the lab and used to target specific antigens. They have been used in many different areas, such as pregnancy tests where they bind onto specific proteins found in pregnant women’s urine or in cancer treatment where they bind onto and kill cancer cells. The process to create antibodies has 2 steps: • • An animal is injected with a pathogen, causing the mouse to produce lymphocytes that make antibodies against the pathogen These are then extracted and fused with cancer cells to create hybridoma cells that can both divide and make antibodies (Monoclonal Antibodies) These can be very useful instead of chemotherapy and radiotherapy as cancer drugs can be attached to only the hybridoma 47 Edexcel GCSE Biology: Unit 5 - Health, Disease and the Development of Medicines written by Oluwadamilola Olatunji, edited by Ken Tu cells meaning that dosage does not harm any surrounding healthy cells during the process. They can also be used in diagnosis as if antibodies are made slightly radioactive, when they attach to cancer cells the radioactivity can be detected, making locating cancer cells easier. 48 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions written by Ken Tu Photosynthesis All living organisms whether plant, mammal, or bacteria, they need energy to survive. Plants use photosynthesis to use the energy from light to be used as a store of energy in their own bodies. This energy comes in the form of ATP (adenosine triphosphate is what it stands for and it's a molecule which provides energy). This energy can be used to grow biomass and because all of its energy initially came from the sun, photosynthetic organisms - plants - can be described as the producers or autotrophs (an organism which produces its own food) of the food chain. The word equation for photosynthesis is the following: Energy from sunlight gets transferred Carbon Dioxide + Water → Glucose + Oxygen + (Energy [ATP]) Via Chlorophyll The balanced formula equation is below: 6CO + 6H O → C H O + 6O 2 2 6 12 6 2 Note: The reverse reaction, oxygen + glucose → water + carbon dioxide, is the equation for aerobic respiration. As glucose is formed as a product, it is called a monomer. You may learn this in Chemistry where glucose acts as a single unit for a polymer. Many of those same units chemically bonded together are called a polymer. When many glucose monomers are joined together, it is called starch. Plants can also convert this glucose into a “double unit” called sucrose. An important difference to note between glucose and starch is that starch is insoluble (does not dissolve in water) whilst glucose is soluble (dissolves in water). Curiosity: As glucose is a sugar molecule, these are called saccharides, another term for sugar. Starch is called a polysaccharide; glucose is called a monosaccharide and sucrose being a “double unit” is called a disaccharide. You are not required to remember this terminology for GCSE Biology. The site for photosynthesis to occur in, is the chloroplast which contains chlorophyll. As sunlight hits the plant cells and light energy is transferred to the chloroplasts, the surrounding energy is entering into the reaction therefore we call this an endothermic reaction. Endothermic reactions are where heat from the surrounding area is absorbed into the reaction. An exothermic reaction would be the opposite, so heat being released to the surroundings. Factors of Photosynthesis As with any chemical reactions, there are factors at play which may speed up or slow down the rate of reaction. Energy from sunlight gets transferred Carbon Dioxide + Water → Glucose + Oxygen + (Energy [ATP]) 49 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions written by Ken Tu With carbon dioxide and water being a reactant of photosynthesis, it is evident that more carbon dioxide and more water can cause more energy being released, a faster rate of reaction. The diagram on the right shows the x-axis as the factor affecting the rate of photosynthesis whilst the y-axis represents the rate itself. When the concentration of carbon dioxide increases, the rate of photosynthesis increases until the rate of reaction plateaus. The rate of reaction no longer increases as carbon dioxide increases. So, carbon dioxide is not the limiting factor and another factor e.g., light intensity. Factors that affect the rate of the following three factors: • • • Light intensity: the more light energy received by the chloroplast, the more photosynthetic reactions occur. Temperature: the higher the temperature, the faster gas molecules, such as water vapour and carbon dioxide - reactants of photosynthesis, move. Therefore, there are more collisions between the reactants with the chloroplasts and therefore more successful collisions to cause a reaction resulting in a higher rate of reaction. Carbon dioxide concentration: there are more reactants. During photosynthesis, if one factor is not fully optimised to produce the highest rate of photosynthesis, then that factor is called the limiting factor and it is restricting the rate of reaction. The maximum rate of photosynthesis can be determined by the factor in the lowest supply e.g if carbon dioxide concentration and temperature are very high but there’s little light being received, the rate of photosynthesis will be slower. It is only until you increase the light that then, the rate of photosynthesis increases. Inverse Square Law The relationship between light intensity and the rate of photosynthesis are directly proportional however if the distance were to increase, the rate of photosynthesis would decrease. The relationship between the rate of photosynthesis can be described as an example of the inverse square law. Link to a video explain how the inverse square law works: https://www.youtube.com/watch?v=Odv64i1ntV4 If the distance between the light source increases by a factor of 2, the rate of photosynthesis would decrease by a factor of 2 so 4. 2 50 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions written by Ken Tu The equation used to calculate the new Intensity of light (Inew) where the distance of a light source changes from the original distance (dorig) to the new distance (dnew), you use: Inew = ( 𝐈𝐨𝐫𝐢𝐠 × 𝐝^𝟐𝐨𝐫𝐢𝐠 ) 𝐝^𝟐𝐧𝐞𝐰 So, with a given original light intensity of constant k, and that the distance doubles, the only a fourth of the original light intensity has reached the plant. In English when the distance doubled, the light intensity decreased fourfold. Leaf Adaptations for Photosynthesis Leaves are often broad (wide) and flat giving a large surface area for light to be absorbed by the chloroplasts in the palisade cells. Leaves are also thin. This reduces the distance gas molecules have to travel in order to reach the chloroplasts for photosynthesis. The microscopic pores in the bottom of the leaf, called the stoma/stomata, allow for water vapour and carbon dioxide to diffuse into the leaf when there’s a high presence of water vapour. The amount of water vapour and carbon dioxide entering the leaf can be determined by whether the guard cells are open or closed. The specialised guard cells will become turgid/rigid, swollen if water diffuses into them - when there’s a high presence of water - opening the stomata, or flaccid (shrivelled up) if it lacks water closing the stomata. This can cause the stomata to open and close allowing more gas in or less. At night, when temperatures are lower and there’s no sunlight therefore less water vapour, the stoma closes to prevent water loss. Also, because no sunlight means there’s no photosynthesis occurring unless artificial lights are used. Plant Adaptations As mentioned before, plants have adaptations which help them to survive in a given climate. Many deciduous (broad-leafed) plants have leaves which have the following characteristics. The reason for their adaptations is as follows: • Irregularly shaped spongy mesophyll layer: to create air gaps within the cells to allow the gases to diffuse to the chloroplasts easily 51 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions • • written by Ken Tu Waxy cuticle: to prevent pathogens from easily entering the cellular structure, like human skin and to prevent water loss. Upper epidermis layer (outermost layers) or the plant; they are transparent to allow lots of light in for photosynthesis. Many plants in hot climates e.g., cacti, have the following adaptations: • • • Needles/spines instead of leaves; this minimises the surface area from which water loss can occur. It can act as a deterrent to herbivores from eating the plant’s stem. Some cacti plants have hair. This is to trap escaping water vapour so reduces water loss from transpiration. Thick cuticle: this is to reduce water loss from evaporation via transpiration. Transpiration and Translocation All plants need a system where they move nutrients around the body. Transpiration is the movement of water and mineral ions through the leaves often from the root hair cells up through the xylem vessel. Translocation is the movement of sugar/glucose from the companion cells to the phloem vessels bidirectionally, up or down, the body of the plant. Wow, that was a lot of terminology. Let’s break it down! The water absorbed by a plant can be used for the following reasons: • • • • They carry mineral ions e.g., nitrates which are used for producing amino acids, the monomer for proteins. To keep the cells turgid otherwise the leaves would wilt - droop down losing its structure. To cool the leaves when water evaporates from the leaves. For photosynthesis obviously. The movement of water initially occurs in the root hair cells - see diagram on the right. The extended hair increased the surface area which allowed for more water and mineral ions to be absorbed more quickly. The cells walls are also thin to reduce the distance that the water molecules have to diffuse into the cells. The water molecules enter the cell membrane via osmosis, from a high concentration of water to a lower concentration of water via the partially permeable membrane of the cell. Some water molecules can diffuse into the plant via the cell walls. The water travels through the cytoplasm in the cell membrane until it reaches the xylem vessel. This is a passive process. When mineral ions enter the root hair cell, they do so by active transport from an area of low concentration outside the root cell hair, to an area of high 52 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions written by Ken Tu concentration inside the cell where proteins in the cell membrane actively pump the mineral ions, such as nitrates - again, into the cell. This is an active process. Xylem Vessel The diagram on the right, shows the flow of water going up the vessel. Essentially the xylem vessel consists of cells which have died. They are stacked on top of each other with the top and bottom of their cell walls disintegrated creating a hollow tube. They are strong and rigid because the sides of the walls contain hard lignin. We refer to these as the lignified dead cells. This rigid system supports the high-pressure water evaporating up the column may create so that the xylem vessel does not burst. Hence as more water evaporates from the plant, the more water diffuses up the leaves. Water is able to continually go up the vessel as there are weak forces of attraction between the molecules, similar to the effects of water tension hence as water molecules from the top of the column travel up the xylem vessel, water molecules below are being pulled upward by that weak force of attraction. Transpiration only occurs in one direction - up. As transpiration is the movement of water out of the plant, a faster evaporation rate may cause faster transpiration. The following factors can affect the rate of transpiration: • • • • Temperature: higher temperatures mean water particles move faster and diffuse faster therefore the rate of transpiration increases. Greater light intensity: this can cause the stomata to open wider, so more water evaporates out of the stoma hence higher transpiration rate. Wind: higher wind, the more water molecules move away from the stomata cause other water molecules to follow. Low humidity: when there’s little water vapour in the air, there’s a higher concentration of water vapour in the stomata than outside therefore diffusion of water vapour from inside to outside is less likely, hence lower rate of transpiration. 53 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions written by Ken Tu The rate of transpiration can be investigated by using a potometer. The plant would transpire, and the air bubble would move to the left. The place in which the air bubble travels is called the capillary tube with scale. So as water diffuses out of the stomata during transpiration, the air bubble moves at a rate dependent on its environment - the factors mentioned earlier. You can measure the rate of transpiration by the distance travelled by the air bubble in a certain time frame e.g., (mm/min). Phloem Vessel During photosynthesis, plants produce glucose, and from this, they can produce sucrose as a sugar which can be transported up or down the plant. Sucrose is translocated (transported) via the sieve tubes of the phloem tissue bidirectionally (up or down) when the companion cell pumps sucrose into or out of the sieve cells. This occurs via active transport. The movement of sucrose can go up if the companion cells pump more sucrose into the vessel. This increases the pressure therefore the flow of the solution goes up and vice versa. The structure of the sieve cells is stacked on top of each other, similar to the xylem vessel, however, the top and bottom of each sieve cell has perforations (holes) allowing the movement of the larger sugar molecules up or down the phloem vessel. An additional adaptation of the sieve cells is that they contain very little cytoplasm on the edges. This means there’s more space for the sucrose solution to move around the plant. The diagram on the right illustrates how the sucrose can be pumped into the sieve tube alongside a diagram of the xylem vessel. Water from the xylem can enter via osmosis into the phloem tissue to create a sucrose-water solution where the sucrose dissolves into the water. 54 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions written by Ken Tu Plant Hormones Hormones are present throughout the body of a plant. When there’s a change in stimulus, a corresponding response occurs. When a light source hits a plant, the plant begins to grow in the direction of the light. This is an example of phototropism in action. A tropism is where a plant will react to a stimulus by growing towards or away when given a stimulus. The two examples of tropism required for GCSE Edexcel are phototropism and gravitropism. Phototropism In plants, there’s a plant hormone called an auxin which causes a plant cell to elongate more. Auxins move towards areas of shade so when a light hits a particular area of the plant, the auxins move to the opposite side the shaded side of the plant - causing more cell elongation. As a result, the plant’s stem bends towards the light. This helps the plant reach more sunlight for photosynthesis. In the diagram on the right, you can see how the auxin causes the cells to become longer therefore causing the plant shape to bend closer to the light source. To find the location of the auxins, in the 19th Century, Charles Darwin devised an experiment followed by another scientist named Frits Warmolt Went (early 20th Century). 55 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions written by Ken Tu The diagram on the top shows the experiments conducted by the scientists. The location of the auxins is at the tip of the shoot. This is because no bending occurs when the tip of the shoot was either cut off, detached from the stem, or not exposed to light. Gravitropism Auxins can also be found in the roots of a plant; however, the effects are the opposite than the effect of auxins in the shoot. Auxins present in the roots inhibits cell elongation so a high concentration of auxins on one side of the root causes the cells to become shorter and as an overall result, the root bends downwards. This is because the force of gravity pulls most auxin hormones to the lower side of the plant, and when in the root of a plant, causing the root to bend into the soil to absorb nutrients like water and mineral ions. Commercial Uses of Plant Hormone Plant hormones can be used or a variety of different purposes. Here are the few uses you are required to know for GCSE. Auxin Use Artificial auxins make plants cell elongate and grow. By using too much artificial auxins, this can cause the plant to grow uncontrollably and die. Selective weedkillers may contain artificial auxin specifically designed to kill a certain species of plant e.g., those with broad leaves, 56 Edexcel GCSE Biology: Unit 6 - Plant Structures and their Functions written by Ken Tu therefore farmers can use them on their crops as the selective weedkiller will not target the crops they grow e.g., wheat. Rooting powder also contains artificial auxins. By dipping a plant stem in the rooting powder, roots will quickly grow from the plant. These roots can then be cut off - referred to as the cuttings - and planted to form genetic clones of the plant. This can allow for the same plant to be grown faster as opposed to planting a seed. Gibberellins When a seed begins to germinate, essentially it is the reactivation of the metabolic machinery of the seed resulting in the emergence of the roots and stem. For this to happen, a plant will naturally release a plant hormone called gibberellins. Some seeds require a period of darkness before they germinate however by artificially adding gibberellins, you can commence the germination process. Plants use photoperiodism as the response of an organism to the number of daylight exposure they receive. Plants can use these stimuli to bloom, releasing their pollen. Plants grower can override this by adding gibberellins. This can cause pollination to occur earlier. Additionally, seeds are produced after successful pollination i.e., the male and female gamete fuse causing the egg cell to be fertilised. However spraying gibberellins onto some plants can cause fruit, the zygote of a fruit to be formed, without the seed. This gives us a seedless fruit. Ethene Gas During the transportation of fruits, they are often transported not ripe. This means they are often harder as when they’re ripe, they tend to be softer and more susceptible to damage. So unripe fruit can be ripened when needed by using ethene gas/ethylene. 57 58 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu What are Hormones? Hormones are chemical messengers produced in endocrine glands and are carried by the blood to the target organ which they affect. When there is a change in the condition of the body e.g. a change in temperature or chemical imbalance within your body, hormones are released by the endocrine glands to cause a change in the body’s system allowing it to maintain homeostasis effectively. Simply put, homeostasis is the body’s method of maintaining the optimum, physical, or chemical conditions for survival. The different endocrine glands include the following: Pituitary Gland: The pituitary gland is in the brain and releases many hormones including FSH (follicle stimulating hormone), LH (luteinising hormone) and growth hormone. Thyroid Gland: The thyroid gland is in the neck and produces many hormones, including thyroxine. Adrenal Glands: The adrenal glands are positioned above the kidneys, and release many hormones, including adrenalin. Pancreas: The pancreas contains cells which produce insulin, and others that produce glucagon. Testes: The testes release the hormone testosterone. Ovaries: The ovaries produce oestrogen and progesterone. The functions of the following hormones will be mentioned later on in the notes. Hormonal Control of Metabolic Rate The body’s metabolic rate is the rate at which energy stored in your food/body (fat) is transferred by all the reactions that take place in your body to keep you alive. When one is exercising or participating in an activity that brings about chemical/physical changes e.g., eating food, the metabolic rate responds to this by releasing specific hormones. The basal metabolic rate (BMR or resting metabolic rate) is measured at rest when the temperature is room temperature and given a long time before their last meal. 59 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu Adrenaline Adrenaline is produced by the adrenal glands and prepares the body for a “fight or flight” response. The effects of this are the following: • • • • An increased heart rate as the heart cells contract more rapidly. Increased blood pressure. Increased blood flow to the muscles for increased aerobic respiration. Raised blood sugar levels; the liver is stimulated to convert glycogen (polymer) to glucose (monomer). Thyroxine The role of thyroxine serves to increase the concentration of itself if concentration levels of thyroxine is low in the bloodstream and vice versa (if there’s high levels of thyroxine, thyroxine will serve to decrease the release of thyroxine.) This is called a negative feedback loop the increase in thyroxine concentration results in the decrease of thyroxine being released. Thyroxine causes heart muscles to contract more rapidly similar to adrenaline and it also increases the rate at which proteins and carbohydrates are broken down inside cells, consequently resulting in more aerobic respiration. Thyroxine Mechanism If levels of thyroxine are low, the hypothalamus is stimulated to produce TRH (thyrotropinreleasing hormone). This production of TRH in the hypothalamus causes the release of TSH (thyroid-stimulating hormone) in the pituitary gland. TSH acts on the thyroid gland, causing it to produce thyroxine. The increase in levels of thyroxine inhibits the production and release of TSH & TRH. The inverse would happen if the initial levels of thyroxine were high. The thyroxine mechanism can be represented using the following diagram. 60 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu The Menstrual Cycle The menstrual cycle represents the cycle of changes that takes place during a woman’s reproductive system. The cycle continues from puberty (ages 8-14) to menopause (ages 45-55). In summary, the menstrual cycle demonstrates how a woman’s body prepares for the fertilisation of her egg as she begins menstruation. This is a woman’s body’s system to prepare for a pregnancy. The four hormones involved in the menstrual cycle are the following: • Oestrogen, released in ovaries, thickens the uterus lining, and stimulates the release of LH and FSH. • Progesterone, released by the corpus luteum - egg follicle after ovulation, inhibits release of FSH and LH and maintains the uterus lining. • Luteinising Hormone (LH), released from the pituitary gland, surge in LH triggers ovulation, the egg to be released from the ovary. • Follicle Stimulating Hormone (FSH), released from the pituitary gland, stimulates growth and maturation of the egg follicle. 1. At the start of the cycle, FSH released by the pituitary gland, causes the egg to mature in the follicle. 2. The levels of oestrogen released in the ovaries increases, which causes the lining of the uterus to develop. 3. These increasing levels of oestrogen cause the levels of FSH & LH released by the pituitary gland to surge, causing ovulation. This results in an egg being released. 4. Once the egg is released, the egg follicle becomes a corpus luteum releasing progesterone, which maintains the lining of the uterus. 5. If the egg is fertilised, the levels of oestrogen and progesterone remain high in order to maintain the lining of the uterus. 6. If the egg is not fertilised then the levels of progesterone will decrease as the corpus luteum shrinks therefore resulting in the breaking of the uterus lining, called menstruation (a period) which comes out as blood. In the diagram above, day 14 is typically the day where ovulation occurs. 61 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu Hormonal and Physical Contraception Contraception are measures to prevent a pregnancy from occurring. The pill - oral contraception, also known as the pill, contains oestrogen, progesterone, or a combination of both these hormones. These hormones inhibit the production of FSH, so the eggs do not mature. Condoms/Diaphragm - they both act as a physical barrier to prevent the sperm from entering the uterus. Hormonal methods of contraception are more effective than barrier methods; barrier methods rely on the barrier remaining intact, whereas hormonal methods make the chance of pregnancy as low as possible via chemical methods. Assisted Reproductive Technology (ART) Assisted Reproductive Technology (ART) is used to aid those who have trouble conceiving. ART uses hormones to increase the chance of pregnancy. Clomifene therapy is where women who rarely release an egg are given a drug, called clomifene, that increases the levels of FSH and LH in the blood. This encourages egg follicle maturation. Another technique is called IVF (in vitro fertilisation). This is where sperm cells are taken from man. Hormones are given to the woman to cause ovulation releasing the egg. The egg is taken from the ovary to combine with the sperm for fertilisation to take place. Then the one or two healthy embryos are placed in the uterus. Homeostasis Maintaining a normal environment internally allows for processes such as enzyme activity and metabolism to occur at a constant rate. Homeostasis are the self-regulating physiological processes allowing humans to perform a task at the optimum rate given the environmental conditions. Homeostasis is important; it regulates body temperature to allow for optimum rate of enzyme activity; the body's enzymes function best at 37°C. Osmoregulation is important as it allows for the water potential of the body’s cells to remain optimal. 62 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu Thermoregulation If the hypothalamus detects blood or brain temperatures below 37°C, a number of changes will occur. The body will begin to shiver, where muscles start to contract and relax rapidly. Some of the energy released from respiration in the cells increases the body’s temperature. The hair erector muscles in the dermis of the skin causes body hairs to stand upright. In humans this has little effect, but in animals it traps air next to the skin for insulation. Narrowing of the capillaries near the skin causes reduced blood flow near the skin, keeping blood deeper inside the body. This reduces the rate of heat energy transfer to the air as more warm blood flows through the shunt of the capillaries. This is called vasoconstriction. If the hypothalamus detects body temperatures above 37°C, a number of changes will occur. The body will begin to sweat; sweat spreads out as a thin layer over the epidermis, where it evaporates. As sweat evaporates, it transfers energy to the surroundings as heat, so the skin cools down. The hypothalamus also stimulates the capillaries near the skin to widen, increasing the blood flow to the skin. This makes it easier for blood to transfer energy to the surroundings as heat. This is known as vasodilation. 63 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu Controlling Glucose Levels Blood glucose concentration is controlled by the levels of the hormone insulin. Insulin is a hormone that causes cells in the liver and other organs to take in glucose from the blood therefore it serves to reduce the blood glucose concentration in the body. If blood glucose levels are too high (hyperglycaemia), receptors in the pancreas detect the rise in blood glucose concentration, causing insulin to be released from the pancreas . The release of insulin causes excess glucose to be stored as glycogen in the liver, which causes blood glucose levels to fall. If blood glucose levels are too low (hypoglycaemia), receptors in the pancreas detect this and the hormone glucagon is released. Glucagon causes cells in the liver to convert glycogen back into glucose. Diabetes Type 1 diabetes occurs when the pancreas of the patient is faulty, causing it to produce not enough/ no insulin. This is controlled by insulin injections and lifestyle changes such as diet changes. Type 2 diabetes occurs when the body no longer responds to insulin, and is caused by lifestyle choices such as lack of exercise and a poor diet. It is controlled by having an improved diet, and engaging in exercise. 64 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu Urinary System and Osmoregulation The urinary system is the body’s method of removing the waste material from the bloodstream. This waste material (urea) is naturally produced when the liver breaks from proteins. This process occurs in the kidneys where thousands of microscopic tubes called nephrons filter the blood contents to produce urine. The high pressure of the blood entering the glomerulus from the renal arteries causes an aggressive form of filtration to take place, where water, urea, sugars and mineral ions are filtered out of the bloodstream and into the Bowman's capsule. Then selective reabsorption takes place in the proximal convoluted tubule, where the glucose and amino acids are actively transported (via active transport) back into the bloodstream using energy from respiration. Some water and mineral ions are allowed to re-enter the bloodstream via osmosis to then circulate filtered blood back to the heart via the renal veins. The reabsorption of water occurs in the loop of Henle. The amount of water returning into the blood can also be controlled by levels of antidiuretic hormone in the collecting duct. Waste products then enter the bladder to be stored as urine, where it exits through the ureter and then the urethra during excretion as urine. Wow fam that was bare words uno! How am I gonna remember all that? - Ken Let’s break it down into 5 main steps. 65 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu FILTRATION 1. Blood flows through the network of capillaries called the glomerulus under pressure. This is within the Bowman’s capsule. 2. The Bowman’s capsule is adapted to allow small molecules such as water, urea and glucose into the nephron but large molecules such as protein, lymphocytes stay in the blood. 3. The filtration fluid flows through the nephron where selective reabsorption of mineral ions and glucose occurs in the 1st convoluted tube (AKA proximal convoluted tube). 4. The water is reabsorbed by osmosis depending on how dehydrated the body is. This occurs in the loop of Henle and the collecting duct. 5. The remaining fluid will exit the body through the ureter and urethra as urine. And of course, the nephron has a large surface area (microvilli) to increase the reabsorption of substances whilst the cells in their cell membrane have many mitochondria to allow for active transport. Antidiuretic Hormone Osmoregulation is also controlled by the levels of ADH - antidiuretic hormone. This makes the kidney tubules more permeable, allowing more water to re-enter the bloodstream. For example, if blood water levels are too high, less anti diuretic hormone will be released by the pituitary gland, making the kidney tubules less permeable and resulting in more water being urinated, and the levels of water in the blood decreasing as water is being used for other bodily functions. If the water levels are too low, the pituitary gland will release more antidiuretic hormone, so that the kidney tubules are more permeable and hence more water will re-enter the bloodstream, increasing water levels. Kidney Treatments Your body can manage with only one kidney however problems arise with the removal of waste products from the body if both kidneys fail to function properly. The person’s blood will contain too high of a concentration of toxins such as urea. To solve this, a kidney transplant may occur where the kidneys of the patient are replaced with an organ donor's kidney. 66 Edexcel GCSE Biology: Unit 7 - Animal Coordination, Control and Homeostasis written by Aimua Igbinehi, edited by Ken Tu Another solution is to have frequent kidney dialysis each couple days to remove the level of toxic substances in the body. The diagram on the right explains how kidney dialysis works. Essentially the urea diffuses into the dialysis fluid to reduce the concentration of urea in the blood. The advantages and disadvantages of dialysis can be shown in a table like so. Kidney Dialysis Kidney Transplant Advantages • Keeps the patient with kidney failure alive • • Permanent cure No need to frequently visit the hospital Disadvantages • Very time consuming as you have done dialysis very often Patient’s diet must be controlled to include low levels of protein, water, and salts. Can cost a lot of money over time • Possibility of rejection where the organ donor’s organ is attacked by the patient's immune system since they do not recognize the different antigens on the donor’s organ. Therefore immunosuppressants (drugs which suppress the immune system) must be taken for the rest of your life Because of the immunosuppressants, it’s easier to catch other diseases Few supply of kidney • • • • FYI: Urea is the breakdown of excess amino acids in the liver. This process is also called deamination. 67 68 Edexcel GCSE Biology: Unit 8 (Exchange and Transport in Animals) written by James San What is the purpose of exchange? All living things must have metabolism to survive. To carry out metabolic processes, we need to take in substances from the environment and excrete waste substances to the environment. • Cells need glucose and oxygen for aerobic respiration, a metabolic process that produces carbon dioxide. They also need a sufficient volume of water which prevents crenation (shrinking of cells due to water loss by osmosis) and cytolysis (bursting of cells due to water gain by osmosis). • Urea is a waste substance that is produced by the breakdown of excess amino acids (deamination) in the liver. Urea, as well as carbon dioxide produced by aerobic respiration and excess amounts of water and mineral ions, must be excreted. Unicellular organisms can simply use diffusion to exchange enough substances to supply their entire volume, but multicellular organisms cannot. This is because unicellular organisms have a very high surface area to volume (SA:V) ratio - the amount of surface area per unit volume. As you will read below, having a higher surface area increases the rate of diffusion and so unicellular organisms can more easily diffuse a large number of substances. However, multicellular organisms have a smaller surface area to volume ratio because their volumes are substantially greater. Therefore, multicellular organisms require transport systems to move substances. For humans, the main two transport systems are the respiratory system (involving the lungs) and the circulatory system (involving the heart). Fick’s law and factors affecting the rate of diffusion The rate of diffusion is affected by three main factors: • Surface area: The greater the surface area, the faster that molecules can move from one side of the membrane to the other. Therefore, a higher surface area increases the rate of diffusion. • Concentration gradient: The steeper the concentration gradient, the faster the net movement of molecules from the area of higher concentration to the area of lower concentration. Therefore, a steeper concentration gradient increases the rate of diffusion. • Membrane thickness: The thicker the membrane, the longer the diffusion distance that molecules must travel, which slows down the net movement of molecules. Therefore, a thicker membrane decreases the rate of diffusion. Fick’s law neatly combines the rate of diffusion with these three factors into one equation: rate of diffusion = 𝐬𝐮𝐫𝐟𝐚𝐜𝐞 𝐚𝐫𝐞𝐚 × 𝐜𝐨𝐧𝐜𝐞𝐧𝐭𝐫𝐚𝐭𝐢𝐨𝐧 𝐠𝐫𝐚𝐝𝐢𝐞𝐧𝐭 𝐦𝐞𝐦𝐛𝐫𝐚𝐧𝐞 𝐭𝐡𝐢𝐜𝐤𝐧𝐞𝐬𝐬 69 Edexcel GCSE Biology: Unit 8 (Exchange and Transport in Animals) written by James San Gas exchange The function of the lungs is to transfer oxygen from the air into the blood and carbon dioxide from the blood to the air - this is gas exchange. To increase their efficiency to exchange these gases, the lungs contain millions of air sacs called alveoli. The alveoli are surrounded by a network of capillaries in which blood flows. Deoxygenated blood from the rest of the body arrives at the alveoli in the capillaries, with a high concentration of carbon dioxide and a low concentration of oxygen. Since there is a higher concentration of oxygen in the alveoli than in the blood, oxygen diffuses from the alveoli to the blood. In the same way, since there is a higher concentration of carbon dioxide in the blood than in the alveoli, carbon dioxide diffuses from the blood to the alveoli. Now oxygenated, the blood leaves the alveoli and returns to the heart, ready to be pumped across the rest of the body. The alveoli and capillaries have several adaptations to maximise the efficiency of gas exchange: • The epithelial cells that surround the alveoli are very thin and flattened. This reduces the distance that gases need to move, which increases the rate of diffusion. • Alveoli are folded, which increases the surface area for a faster rate of diffusion. • Blood flows constantly in the capillaries to maintain a steep concentration gradient. 70 Edexcel GCSE Biology: Unit 8 (Exchange and Transport in Animals) written by James San Components of the blood Blood is a tissue, since it is made of groups of similar cells which work together for a specific function. The function of the blood is to transport substances around the body. One specialised cell in the blood is the erythrocyte, more commonly known as a red blood cell. Erythrocytes specifically transport oxygen around the body. When erythrocytes in capillaries reach the alveoli, oxygen diffuses into them and bonds with the red pigment haemoglobin to form oxyhaemoglobin. Once the erythrocytes travel from the lungs to the rest of the body, the oxyhaemoglobin is broken down into haemoglobin and oxygen, and the oxygen diffuses out of the erythrocytes into the body cells. Erythrocytes have the shape of a biconcave disc, which increases their surface area to volume ratio and so diffusion of oxygen is faster. They also do not have a nucleus, allowing more space for haemoglobin and so more oxygen can be carried. Another specialised cell in the blood is the leukocyte, more commonly known as a white blood cell. Leukocytes are very important in the immune response, where the body defends itself against pathogens. When you have an infection, leukocytes divide by mitosis to destroy the pathogens. Therefore, when blood containing pathogens is analysed with a haemocytometer, there will be a high leukocyte count. There are two main types of leukocytes that you need to know: • Phagocytes engulf pathogens in a process called phagocytosis. To do this, their cytoplasm flows around the pathogen and contains enzymes to break it down. • Lymphocytes are a group of leukocytes that have different functions depending on their type. For example, B lymphocytes produce antibodies that bind to pathogens, causing them to agglutinate. This makes it easier for phagocytes to engulf the pathogens. Platelets are small fragments of cells that do not have a nucleus. Their function is to aid blood clotting at the site of a wound, which helps seal the wound. This prevents excessive blood loss and pathogens in the air entering the wound. Finally, plasma is the liquid that carries all the components in the blood. This includes the ones described above, as well as glucose, amino acids, carbon dioxide, urea, hormones, proteins and antibodies produced by B lymphocytes. Blood vessels When the heart pumps blood to the lungs and the rest of the body, the blood flows through vessels called arteries. These arteries then branch out into smaller capillaries, which allow 71 Edexcel GCSE Biology: Unit 8 (Exchange and Transport in Animals) written by James San gases to be exchanged in the lungs and supplies body cells with the glucose and oxygen needed for aerobic respiration. These capillaries then converge again into veins, which carry blood back to the heart. Arteries have thick muscular walls with many elastic fibres. When blood is pumped into the arteries at a fast rate and high pressure, the elastic fibres allow the arterial walls to stretch. Once the blood has been pumped, the arterial walls spring back into their original state, maintaining the blood pressure. This is called elastic recoil. In addition, the lumen (the hollow column where blood flows) in arteries is relatively narrow, which keeps the blood flow at a high pressure. Veins have relatively thinner muscular walls than arteries because blood flows through them at a much lower pressure. The lumen is also relatively larger than arteries so that blood flows more slowly. However, the most distinctive feature of veins are the valves. When skeletal muscle contracts, it presses onto the veins and causes blood to move. Some of this blood can flow back down the veins instead of up to the heart. Therefore, valves open and close to prevent the backflow of blood, ensuring that it moves up to the heart. Capillaries have a very small lumen so that erythrocytes only move across alveoli and body cells one-at-a-time while increasing their surface area to volume ratio. Their walls are also very thin to reduce the distance for substances to diffuse across, increasing the rate of diffusion. Single and double circulatory systems Fish have a single circulatory system. Deoxygenated blood from the fish’s body travels to the heart, which then pumps it right round the body again in a single circuit. The blood goes via the gills to absorb oxygen. This oxygenated blood then travels to the body capillaries to release the oxygen. In single circulatory systems, only deoxygenated blood goes through the heart. Mammals (including humans) have a double circulatory system. This means that the heart pumps blood around the body in two circuits. • In the first circuit, the heart pumps deoxygenated blood to the lungs to absorb oxygen. The oxygenated blood then returns to the heart. • In the second circuit, the heart pumps oxygenated blood around all the other organs in the body. The blood releases the oxygen at the body capillaries and the deoxygenated blood returns to the heart to be pumped out to the lungs again. The heart and the cardiac cycle The heart is at the centre of the circulatory system, where blood flows in and out. The pathway in which blood flows through the heart and around the body is called the cardiac cycle. 72 Edexcel GCSE Biology: Unit 8 (Exchange and Transport in Animals) written by James San 1. Deoxygenated blood from the rest of the body flows into the right atrium through the vena cava. At the same time, oxygenated blood from the lungs flows into the left atrium through the pulmonary vein. 2. The atria then contract, forcing blood to flow into the left and right ventricles. This stage is called atrial systole. As the blood flows into the ventricles, it opens the atrioventricular valves. The right atrioventricular valve is called the tricuspid valve, while the left atrioventricular valve is called the bicuspid valve. 3. The ventricles then contract, forcing blood to flow into the pulmonary artery and aorta. This stage is called ventricular systole. The contraction of the ventricles relaxes the atria and closes the atrioventricular valves, which prevents any blood flowing back to the atria. At the same time, the blood opens semilunar valves (which close after to prevent any blood flowing back to the ventricles). 4. Once the blood flows through the pulmonary artery and aorta, the ventricles relax. This stage is called diastole. 5. Blood flowing through the pulmonary artery goes to the lungs and becomes oxygenated at the alveoli, while blood flowing through the aorta goes to the rest of the body and becomes deoxygenated at the body cells (when oxyhaemoglobin breaks down and oxygen is released from the erythrocytes into the cells). Note that the atria and ventricles contract without being stimulated by impulses from motor neurones, as would be the case for skeletal muscle. For this reason, cardiac muscle is described as myogenic. You might have noticed from the above diagram that the wall of the left ventricle is thicker than the wall of the right ventricle. This is because the left ventricle must pump blood to the rest of the body through the aorta at high pressure, whereas the right ventricle pumps blood at a much shorter distance to the lungs. Ventricular walls are in general thicker than atrial walls since they have to pump blood at longer distances away from the heart, whereas the atria only pump blood down to the ventricles. 73 Edexcel GCSE Biology: Unit 8 (Exchange and Transport in Animals) written by James San You might have also noticed that there is a wall in the heart which separates the right atrium and ventricle from the left atrium and ventricle. This wall is called the septum and ensures that deoxygenated and oxygenated blood flowing through opposite sides of the heart do not mix. Cardiac output Cardiac output is the total volume of blood pumped by a ventricle to an artery every minute. You can calculate it using this formula: cardiac output = heart rate × stroke volume, where cardiac output is in litres min , heart rate is in beats per minute (bpm) and stroke volume is in litres. –1 The heart rate is the number of beats per minute, and the stroke volume is the volume of blood pumped by one ventricle each time it contracts. Respiration Respiration is the process of releasing energy from the breakdown of organic compounds, usually glucose (it is the main respiratory substrate). It is an exothermic reaction and the energy released can be used for metabolic processes. Some of these metabolic processes include: • synthesis of organic polymers from their monomers, e.g., proteins are made by the joining of amino acids • contraction of muscles which allows animals to move • thermoregulation in mammals and birds • active transport of substances through plasma membranes • maintenance, repair and division of cells and cell organelles. There are two different types of respiration - aerobic and anaerobic. Aerobic respiration uses oxygen and is the most efficient type of respiration. It happens all the time in animals and plants, inside the mitochondria. • glucose + oxygen → carbon dioxide + water + energy During exercise, muscles require more energy to contract and therefore the rate of aerobic respiration must increase. To do this, the heart pumps blood faster at a high pressure to increase blood flow. This allows more glucose and oxygen travelling in the blood to reach the muscles. However, there is a limit to the amount of blood that the heart can pump. If not, enough oxygen can reach the muscles, then anaerobic respiration takes place. Anaerobic respiration takes place in the cytoplasm and only partially breaks down glucose into lactic acid, releasing much less energy than aerobic respiration. • glucose → lactic acid + energy A build-up of lactic acid produced by anaerobic respiration can cause an oxygen debt, which is the amount of oxygen that the body needs to oxidise the lactic acid to form carbon dioxide and water (as would be produced by aerobic respiration). 74 Edexcel GCSE Biology: Unit 8 (Exchange and Transport in Animals) written by James San Anaerobic respiration in plants and fungi is different than in animals: • glucose → ethanol + carbon dioxide + energy In yeast, anaerobic respiration is a fermentation reaction, which is often used during brewing and bread-making. Ethanol is the alcohol found in alcoholic drinks like beer and wine. In breadmaking, bubbles of carbon dioxide gas expand the dough and help the bread rise. 75 76 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu Introduction into Ecosystems Organisms need nutrients and resources to survive. Animals such mammals, fish, and microorganisms require oxygen to respire, food to maintain/grow their health and water to act as a medium for metabolic processes e.g., carry oxygen, to occur. Plants will need light, carbon dioxide and water to photosynthesise as well as mineral ions. Additionally, they may demand shelter from the harsher climates or to avoid predation. All organisms are continually interacting with the environment thus forming an ecosystem. The diagram on the right shows water in the soil entering the root hair cells of the plant via osmosis and mineral ions entering via active transport. The soil (environment) interacts with the plant (organism) 9.1) The individual organism refers to a living structure which can reproduce, respire, react to stimuli, adapt, grow, maintain homeostasis. The population refers to the volume in number of different species which exist. The communities consist of the interactions between the different species which live in different habitats. When the populations of species e.g., a fox depends on a rabbit for food and the rabbit avoids the fox’s predation, we say they’re interdependent. The state of the habitat can also impact the population levels of a species e.g., deforestation in a tropical rainforest may reduce levels of a certain species. In the analogy mentioned, we have a fox and a rabbit. Both organisms are called biotic factors. Ecosystem Interactivity 9.2b) Biotic Factor - refers to the organisms within the ecosystem which can affect each other in terms of health, population. As you can imagine in the rabbit-fox analogy, higher levels of fox lead to higher predation and lower population levels of rabbits. Rabbits are herbivores so if there were another animal which ate the same food as the rabbit, they would be competing for food. In Yellowstone the elks and beavers competed for food from trees. This led to the overgrazing of many tree species within the area. So more grey wolves (a predator of elks) were introduced into the region to reduce the consumption of trees. The aim was to increase the predation of elks, lowering their population and as a consequence of the lower population of elks, the beavers had less competition for their food, so the populations of beavers rose. This demonstrates how predators and prey biotically affect each other. This is quite a large chain. In a smaller prey-predator cycle the population levels over time may look like this. 77 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu As the population levels of the beavers rose, of course, their activity levels rose, and they began to change the habitat by building dams, increasing the biodiversity. The construction of the dam allows new adaptation of different plant species to form. 9.2a) Abiotic Factors - refers to the effect a change in environment has on the distribution of organisms within an ecosystem. These can be physical as well as chemical changes e.g temperature, rainfall to soil nutrient concentration and pollution. Each species has certain adaptations to their particular environment so a change in environment may result in a different distribution of that species. Temperature - the long-term rise in global warming caused by increased greenhouse gas emissions can cause the decline in the distribution of animals adapted to living in a cooler climate. E.g., polar bear populations will decline. Water - if a flood occurs, most plants will be waterlogged (oversaturated with water) and likely die followed by the animals which have fed on the plants Light - very low light intensity may prompt an increase in a distribution of fungi as they do not photosynthesis; they have no chlorophyll. In dense forests, the top layer will receive most sunlight therefore prompting those trees to grow whilst at the bottom layer, very few plant species grow large as there’s limited light for limited growth there. Pollutants - can naturally harm the environment by introducing harmful chemicals which could be consumed by animals and plants and accordingly, reduce biodiversity (variety of species within a community) 78 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu 9.3) Food webs show the feeding relationship between producers, predators, and prey as they go up the consumer layers. In the diagram on the right, the fox and the eagle are the top predators. They all rely on the high populations of producers/autotrophs (an organism who can produce its own food). Should the population levels of the species in the trophic level above decrease, then the population of the trophic level below would decrease. Hence maintaining a healthy even population is important to continue the survival of its species. 9.4) In most biotic relationships the prey gets eaten by the predator and the predator continues to find new prey. In a parasitic relationship, the parasite, no not the movie, one organism benefits by leeching off another organism - its host organism - causing harm to the host. The host may live for long provided that the parasite does minimal damage to the host. Examples include tapeworms and head lice. Tapeworm adaptations: • Hooks and suckers to firmly attach itself to the wall of the intestine Head lice adaptations: • Sharp claws to grip onto scalp and hair • Sharp teeth to pierce skin and suck blood A mutualistic relationship is the opposite where both species receive benefits from the relationship. E.g during pollination the insect receives nectar from the flower as food and the flower places it’s pollen onto the flower to increase its chances of reproducing sexually. Similarly in the relationship between a clownfish and the anemone, the anemone’s stinging tentacle discourage large predators from eating the clownfish if the clownfish swim into the anemone and the clownfish deter predators of the anemone whilst providing nutrients to the anemone via their faeces. 79 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu Measuring Biodiversity 9.5 and 9.6) The distribution of species within a given region can be measured using quadrats and belt transects. A quadrat (basically a uniform sized square) has been placed along this field. Within the quadrats, the abundance is estimated by counting all the samples using a quadrat. Additionally, the population size can be counted using the formula below. Population Size = number of organisms in all quadrats × total size of area where the organism lives total area of quadrats The belt transect can be used to measure the distribution of organisms affected by abiotic factors. Quadrats are placed along a line where the change in environment can e.g. soil mineral ion content can impact the growth of different plants. Changes in the abundance of a species can demonstrate how the abiotic factors affect its growth as well as the abiotic factors that have the greatest impact on the growth of the species. Energy Transfer 9.7B) The diagram on the right shows how much sunlight energy hits the different regions of the Earth. Of course, closer to the equator, more sunlight hits whilst further away and closer to the poles, less light energy hits. As photosynthesis is used for growth, more plant biomass (the mass of tissue) forms towards the equator and consequently a greater amount of plant there, the more producers there are to feed the trophic levels that follow. This can show how the amount of sunlight (light energy) hitting a region can cause a different distribution of organisms to form. Producer (AKA autotroph) → primary consumer → secondary consumer. Plant gets consumed by a rabbit and the rabbit gets consumed by the fox. Plant → rabbit → fox Reasons why not all the energy from the previous organism gets transferred: • • Energy remained stored in plant biomass via the plant’s body e.g in the stem. Chemical from the food gets dissipated to the surroundings as heat energy during an organism’s metabolic processes. 80 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu In the pyramid of biomass, as the trophic levels increase, the biomass decreases as not all the energy from the prior level gets transferred to the surrounding therefore less biomass is produced. As shown in the diagram, as the trophic levels increase, the organisms have less mass. The number of trophic levels is finite as the number of energy given by the sun then becomes too little to support another level thus the new layer cannot be supported. 9.8B) energy efficiency = energy transferred to the new biomass/energy the prior organism had Often it is measured from a scale of 0 to 1 81 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu Preserving Biodiversity 9.9) Fish Farming (9.9a) Negative Humans eat fish as a commodity. With around 17% of protein consumed from fish globally, as the population in the world increases, the demand for fish increases. This can cause the overfishing of wild fish hence interrupting the biotic factors in the natural world. This can damage ecosystems and their biodiversity since fish also provide nutrients to the surrounding coral or surrounding species via its decay from faeces and predation. Fish farming may also cause problems as the fishes are relatively close in proximity resulting in diseases being more easily transferred as well as abiotic changes if uneaten food and faeces sink to the bottom of their environment - possibly manifesting pathogenic microorganisms if not cleaned properly. Introducing species (9.9b) By introducing a new species into the ecosystem, this can affect the distribution of the native/indigenous species. A new species may be introduced with the intent of controlling the population of another species however this could have an even greater negative impact that exacerbates the problems. For example, cane toads from South America were introduced to Australia as a foreign predator to control the high numbers of sugar beetles, which were eating sugar cane crops. As the toads preyed on the sugar beetles, there was a low species population of the sugar beetles, yet the toad’s population have now become a problem as they are poisonous so kill the native animal therefore increasing the competition. This could reduce biodiversity if the cane toads kept their feeding off the other indigenous creatures in the region. Eutrophication (9.9c) Eutrophication is the addition of more nutrients e.g., mineral ions like nitrates or phosphates, into an ecosystem - more than it would usually have. An example of this can be using NPK (nitrate, phosphate, potassium) fertilisers to help crops grow but as a side-effect, it causes the growth of unwanted plants like algae. The stages of eutrophication are the following: 1. The NPK fertilisers are added to the ecosystem. [1] 2. The nitrates and phosphates and potassium ions are dissolved into the soil. [1] 3. The stream of water takes in the additional nutrients providing the organisms in the water with these. [1] 82 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu 4. The high concentrations of these new nutrients such as nitrates and phosphates encourage the plants and algae to grow more rapidly. [1] 5. As the algae grow, they block more sunlight from reaching the plants in the water therefore less photosynthesis occurs, and less oxygen is produced. [1] 6. As the oxygen concentration decreases, aquatic animals receive less oxygen therefore die and decrease in population. [1] 9.10) Biodiversity is classified as the variety of species within an area. When ecosystems are damaged, only a handful of species are adapted to survive in such regions and so there are fewer complex food webs. A reforestation is obviously where trees are planted in order to increase the range of habitats and number of different species living there. By abiotically affecting the ecosystem, new species can form and therefore result in more biodiversity. Conservation is where efforts are made to protect the population of a certain species. Often that species is endangered/rare. Preserving the existence of a species is also more easily done if the habitat of that species is maintained. Habitats are linked to the survival of said species. Reasons why preserving biodiversity is important: • Areas with greater biodiversity can recover faster from natural disasters e.g., flooding. • We can use plants/animals for different sources of food. • A variety of different animals/plants can be used as a source of medicine and other products. Food Security 9.11B) Food security indicates always having sufficient access to safe and healthy food. For context, an area with good food security will include people who can easily go and buy food from the supermarket whilst poor food security will include having to trek 10km just for potable water. 83 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu Levels of food security could be affects by the following factors: • • • • • Rising human population increases the demand for food yet the quantity produced remains the same. As a result, food shortages/famines could occur. Increased meat consumption and fish consumption as opposed to agricultural inputs (conventional farming of plants) could use too much land to create food. If new pests/pathogens are found within a region, obviously this could reduce the growth of crop hence resulting in a lower crop yield hence poorer food security An environmental change caused by humans could increase the food yield if fertiliser is used or make matter worse if carbon emissions increase as it can cause climate change leading to more pests An idea to reduce fossil fuels is to replace them with biofuels (plant fuel) therefore decreasing the carbon emission released when mining for them 9.12) This specification point is mentioned in the teachings below. Material Cycles: Carbon, Nitrogen and Water 9.13) Carbon Cycle The Carbon Cycle refers to the movement of carbon through organisms and nature such as through plants/animals to forms like fossil fuels for carbon dioxide in the air. Painting a picture for you • • • • • • • Carbon dioxide in the air diffuses into the plant leaves; photosynthesis can occur causing the carbon dioxide from the air to now be a part of the carbon in glucose (C6H12O6 - all numbers should be subscripts of course). If the glucose is used for respiration, the carbon is released back into the atmosphere as carbon dioxide. Alternatively, it could be used to create more plant biomass. The biomass of the plant consists of proteins, lipids (fat), and carbohydrates which all contain carbon. It is via excretion that the plants and animals can release carbon The waste material (excretion) gets decomposed by decomposers (microorganisms) as a form of food. When the microorganism/decomposers or fungi (same function) respire, they release carbon dioxide into the atmosphere in the form of carbon dioxide. Similarly, the plant biomass’s carbon can be transferred to animals if they directly consume the plant. If many plants/animals die at once, the decomposers cannot fully decompose them so over millions of years, under the pressure of gravity and the material pushing down on their dead remnants, they can change into peat/coal which can be burnt via combustion to release carbon emissions into the atmosphere. NB: the forms of respiration mentioned here are all AEROBIC (glucose + oxygen → water + carbon dioxide + energy {ATP}) If you’re curious ATP stands for Adenosine Triphosphate. 84 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu To reiterate, the movement of carbon via biotic and abiotic factors is called the carbon cycle. 2 Abiotic: • Fossil fuels • Carbon dioxide in the air 3 Biotic: • Decomposers • Animals • Plants The diagram on the right is part of Ken’s trusty flashcards that got him a 9 in biology and illustrates what the carbon cycle essentially is. By using your knowledge of the biotic elements in the carbon cycle, you can infer that a reduction/increase in a particular part of the carbon cycle can result in a decrease/increase in another. 9.14) Water Cycle The water cycle refers to the movement of water as well as the dissolved mineral ions through its abiotic factors - duh! Let me paint you a picture Living organisms need nutrients to survive and there are limited resources on Earth so they must be recycled. • • • • • Water flows from lakes and rivers and into the sea. In the ocean the water evaporates to form water vapour. As the warm water vapour rises, it cools and condenses to form clouds. Then the water droplets become too large and heavy thus they fall as water droplets (rain) back into the lake to restart the cycle Additionally, groundwater from the surround soils can diffuse into the mainstream of river 85 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu Water is important as it provides a means for chemical reactions/metabolic processes to occur e.g., cytoplasm in the cells need water for chemical reactions to take place. Furthermore, to make water potable (safe for consumption), the water may be treated with chemicals such as chlorine to kill bacteria or filtered to remove dirt. Obtaining fresh water Sea water is obviously salty, and humans cannot drink it duh. So, obtaining drinkable water from salty seawater, the process is known as desalination. This is where the distilled water is obtained by evaporating water then condensing it and collecting it afterwards. Salty seawater enters the tube on the left and once it is heated past its boiling point. That leaves distilled water out once it is condensed. 9.15) Nitrogen Cycle The nitrogen cycle describes the movement of nitrogen via abiotic and biotic factors. Nitrogen in plants • Nitrogen is stored a as proteins/DNA in the plants • Plants allow require nitrogen to help it grow however nitrogen in the air is unreactive (it’s a diatomic molecule: inert) • So, they absorb the nitrogen compounds from the nitrate ions via active transport in the soil. Bacteria and Nitrates • The soil fertility is maintained by the decomposers (microorganisms) which release nitrates as well are carbon when decomposing dead animals • Additionally, farmers will add manure (animal waste e.g. faeces) to utilise the decomposition to release the nitrates into the soil for the plants to absorb. Nitrates are soluble and dissolve in water hence when plants absorb the water, they also absorb the mineral ions. • Farmers may also use artificial fertilisers to provide more nitrates to the plants • Nitrogen-fixing bacteria in the soil converts the nitrogen in the air into nitrate ions available to the plant. • Lighting strikes can also cause unreactive nitrogen to form reactive nitrate ions dissolved in the soil. • Some plants such as peas and beans carry a mutualistic relationship with the nitrogenfixing bacteria; the bacteria is protected inside the nodules in the plant roots whilst the nitrogen-fixing bacteria releases soluble nitrate ions for the plants growth. • Farmers can use this to their advantage by adding a different crop after the peas have been harvested so that the nitrogen-fixing bacteria will continue to release nitrate ions but for a different crop. This is called crop rotation. 86 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu A diagram of the nitrogen cycle can be shown above briefly summarizing what occurs. The urea can be produced as a form of waste product. Indicators of Pollution 9.16B) - HIGHER As mentioned earlier, human activity such as fertilisers use, overfishing or introducing a nonindigenous species can affect the abiotic factors in the current environment. Especially when it leads to pollution, this can cause a decline in the population of one species and the rise in the other. The new species that rises in population will likely have adaptations which increase the chances of its survival than the species declining. Water Pollution Some aquatic invertebrates can qualitatively indicate the level of pollutants in water qualitatively meaning whether the water is very highly polluted to very clean water (low levels of pollution): this is called an indicator species. This pollution can often come in the form of sewage from factories nearby. This can also release additional nutrients in the soil hence causing unwanted eutrophication if the sewage pollute contains nitrate elements. As less oxygen is in the habitat because of eutrophication, the species which were previously adapted to high oxygen concentration levels, die out whilst there emerges a rising prevalence of species adapted to surviving in low oxygen concentration levels. 87 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu a) The presence of sludge worms and bloodworms = polluted water b) The presence of more complex organisms like freshwater shrimps and stoneflies = clean water. Freshwater Shrimp Stone Fly Air Pollution Similarly, the presence of a particular plant/fungi indicates the quality of the substances in the air. c) Presence of lichen - indicates higher levels of sulphur-containing gases e.g., sulphur dioxide. Blackspot fungus is a pathogen of roses and cannot grow in high concentration levels of sulphur-containing gases. The presence of it indicates low air pollution of sulphurcontaining gases All indicator species show to a degree the quality of the air however they do not quantify the concentration levels of these pollution levels. You can measure both the air and water pollution levels by using a sensor. These give numerical, quantitative data about the concentration of pollution in the region. 88 Edexcel GCSE Biology: Unit 9 - Ecosystems and Material Cycles written by Ken Tu Rates of Decomposition in Food Preservation 19.7B) By recalling from the carbon cycle, you will know that microorganisms decompose the soft tissues of an organism or its faeces once dead. Temperature increase → increase the rate of decomposition Increased water content (moisture) → increase the rate of decomposition Increased oxygen → increase rate of decomposition as organisms will use this energy to respire and speed up their metabolic processes to decompose more. To preserve food, you want to restrict the activity of the decomposers hence why you can do the opposite to preserve food: • • • • Reduce the temperature e.g., in fridges/freezers Reducing the water in the food e.g., salting meat causes water to exit the food via osmosis therefore less microorganisms’ activity By packaging foods in air-tight containers Irradiation is using radiation to directly kill the bacteria/decomposers on your food to preserve it and reduce chances of food poisoning 19.8B) The same factors will increase the rate of decomposition in composting. Composting is decayed, waste garden material. Think of it as a mixture of decomposed organisms from the decomposers which releases nitrogen as a form of food for the garden you place it in. This as you can imagine increases the soil fertility. 19.B) Rate is just the amount decayed (mass lost in the organism) / time elapsed. rate of decomposition = mass lost in the organism time elapsed 89