Richter Indole and Pyrrole Synthesis: " Disclaimer: This lecture will only cover methodology for the construction of the indole and pyrrole ring systems, rather than functionalionalization of pre-existing heterocycles, which would be the topic of another series of lectures. Partial List of Transforms Discussed: 1. Batcho-Leimgruber Indole Synthesis 2. Reissert Indole Synthesis 3. Hegedus Indole Synthesis 4. Fukuyama Indole Synthesis 5. Sugasawa Indole Synthesis 6. Bischler Indole Synthesis 7. Gassman Indole Synthesis 8. Fischer Indole Synthesis 9. Japp-Klingemann Indole Synthesis 10. Buchwald Indole Synthesis 11. Bucherer Carbazole Synthesis 12. Japp-Maitland Carbazole Synthesis 13. Larock Indole Synthesis 14. Bartoli Indole Synthesis 15. Castro Indole Synthesis 16. Hemetsberger Indole Synthesis 17. Mori-Ban Indole Synthesis 18. Graebe-Ullmann Carbazole Synthesis 19. Madelung Indole Synthesis 20. Nenitzescu Indole Synthesis 21. Piloty Pyrrole Synthesis 22. Barton-Zard Pyrrole Synthesis 23. Huisgen Pyrrole Synthesis 24. Trofimov Pyrrole Synthesis 25. Knorr Pyrrole Synthesis 26. Hantzsch Pyrrole Synthesis 27. Paal-Knorr Pyrrole Synthesis 28. Zav'Yalov Pyrrole Synthesis 29. Wolff Rearrangement " 9/1/04 Group Meeting Indole: Nature: – The most abundant heterocycle in nature – Found in tryptophan, indole-3-acetic acid (plant growth hormone), serotonin (neurotransmitter), natural products, drugs – Isolated industrially from coal tar – Biosynthesis of tryptophan CO2H 15 glucose Steps 3 Steps NH2 anthranilate serine N H tryptophan Reactivity: C–4 C–3 C–7 N H C–5 C–2 C–6 – Isoelectronic with naphthalene (slightly lower stabilization energy) – Indole has a higher stabilization energy than benzene – Very weakly basic: pKa of protonated indole: –2.4 – Protonation occurs at C–3 preferentially – Easily oxidized (atmospheric oxygen) – very electron rich – Less prone to oxidation of EWG's on the ring – less electron rich – Electrophilic attack occurs at C–3 (site of most electron density) – C–3 is 1013 times more reactive to electrophilic attack than benzene – C–2 is the second most reactive site on the molecule, but most easily functionalized by directed lithiation – pKa of N–H is 16.7 (20.9 DMSO) – N–1 is the most nucleophilic site on indole – Nucleophilic substitution at benzylic carbons enhanced – Regiospecific functionalization of the carbocycle is difficult without pre-functionalization of the ring (i.e. halogenation) Sundberg, R.J. Indoles. Academic Press Ltd. San Diego: 1996 Richter Indole and Pyrrole Synthesis: " O + + X + N H N H O X H2N NH2 O N H O N H O N H N H 9c N H NH2 1a Ring Contracton 1b 1c X NH2 9b 12 11 9a N H 13 10 N H X N H NH2 9 O 2 + N H X 1d 1 R+O N H 9/1/04 Group Meeting " 8c 8 Y + 3a 7 8a 6 5 X 3b S + 3c N H N H R N H NHCl O 3d N H + NHOH N H N H R Sundberg, R.J. Indoles. Academic Press Ltd. San Diego: 1996 + Y NH2 X X NH2 4 N H N H N H 3 N H 8b N H N H + NH2 NHNH2 O X Richter Indole and Pyrrole Synthesis: " Disconnection 1a: 9/1/04 Group Meeting " Disconnection 1a: R Batcho-Leimgruber Indole Synthesis: O NO2 OMe Me Me R N OMe Me NO2 N R NO2 1 [H] 2 R N H NO2 NH OCOR – Typical [H] = H2, Pd/C; hydrazine, Raney Ni – Other side products from reductive cyclization include N–O – Yields: 50's – 90's R 6 R R O NH2 NO2 5 Variants: OH NO2 3 4 CN Me CH3NO2 R NO2 NO2 R [H] R NO2 HNO3 R NO2 – If R = carbonyl, use KF / 18-c-6 / i-PrOH for the Henry reaction – Use classic Henry conditions otherwise –Typical [H] = Fe, Fe/SiO2 – Yields: 40's – 90's N H – 1: Reduction, then acid – 2: Reduction, then acid – 3: Oxidation, then reduction, then acid Can oxidize the alcohol and not the aniline with Ru(PPh3)2Cl2 Can convert the nitro-alcohol into indole with Pd/C or Rh/C and Ru(PPh3)2Cl2 – 4: Reduction of nitro and cyano (one or two steps), then acid – 5: Wacker oxidation, reduction, then acid – 6: Ozonolysis, reduction, then acid Reissert Indole Synthesis: Me NO2 Sundberg, R.J. Indoles. NO2 NO2 CO2Et Base (CO2Et)2 [H] O NO2 Sundberg, R.J. Indoles; Reissert, A. Ber. 1897, 30, 1030 CO2Me N H Richter Indole and Pyrrole Synthesis: " Disconnection 1b: Disconnection 1d: Palladium Synthesis: Hegedus Indole Synthesis: PdII, then [H] or R' R R PdII Me N H PdII, Cu(OAc)2, benzoquinone – Applied to the total synthesis of rac-aurantioclavine by Hegedus R N H NHX NH2 N H R'M PdII 9/1/04 Group Meeting " (Hegedus, L.S. J. Org. Chem. 1987, 52, 3319) H+ R Br H N I N H – X can be either H, Ac, Ms, TFA – The intermediate organopalladium can be intercepted – Yields: 40's – 90's N H N H – Applied to the total synthesis of arcyriacyanin A by Steglich (Steglich, W. Chem. Eur. J. 1997, 3, 70) Disconnection 1c: Br R O H N O R N H NO2 R R R NO2 R N H N H Disconnection 1–Misc.: Fukuyama Indole Synthesis: – Reductive cyclization mediated by (EtO)3P or PdCl2/PPh3/SnCl2 and CO – Migratory aptitudes unknown – Unknown mechanism – does not involve a nitrene nBu3SnH S N H Sundberg, R.J. Indoles. NH N Ts R R AIBN N H Hegedus, L.S. J. Am. Chem. Soc. 1976, 98, 2674; ibid 1978, 100, 5800; e.g. Fukuyama, T. J. Am. Chem. Soc. 2002, 124, 2137. Richter Indole and Pyrrole Synthesis: " Disconnection 2: Disconnection 3b: Pyrrone Diels-Alder: Gassman Indole Synthesis: O S N H N H R' – Little regiocontrol observed in most reactions – pyrrole-quinodimethanes are not stable and therefore not amenable for Diels-Alders directly R'' Raney-Ni R O NH O SMe 1. t-BuOCl 2. R'' R 9/1/04 Group Meeting " R N 3. base R'' N R' R' – Good regiocontrol observed with ortho or para substitution – ortho/para methoxy substituents failed completely Disconnection 3c: Disconnection 3a: O Sugasawa Indole Synthesis: CN + NH2 BCl3 ZnCl2, AlCl3 or TiCl4 Cl CN NH2 N NaBH4 NaOMe NH2 N H X R R N O- • Z R N H O acid O OH OMe R Ar Ar + Li2PdCl4 H N O O Ac – Requires very strong Lewis Acids so many functionalities are not stable – Choice of second Lewis acid depends on substitution pattern Bischler Indole Synthesis: OH N H – Quite mild, if the O-vinyl derivatives can be synthesized – Not very general: requires HBr (1 eq) and 200+ oC – Mechanism? Sundberg, R.J. Indoles. Gassman, P.G. J. Am. Chem. Soc. 1974, 96, 5495; Sundberg, R.J. Indoles. N H Richter Indole and Pyrrole Synthesis: " Disconnection 3d: Disconnection 3d: Fischer Indole Synthesis: Bucherer Carbazole Synthesis: X R' O + R' R NHNH2 NaHSO3 + acid R H2O 9/1/04 Group Meeting " NHNH2 N H Mechanism? – Common acids: HCl, H2SO4, PPA, BF3/AcOH, ZnCl2, FeCl3, AlCl3, CoCl2, NiCl2, TsOH – Regioselectivity not great with unsymmetrical ketones – Tolerates a wide range of substitution – Product regioselectivity affected by choice of acid, solvent, temperature acid N H X=OH, NH2 Japp-Maitland Condensation: 0.5 eq Japp-Klingemann Modification: OH R' O + N2 O R + acid OR'' N Disconnection 3–Misc.: NH R' R R' Larock Indole Synthesis: 1. Pd//BINAP R 2. TsOH N H O N OBn O NH2•MsOH O Pd(OAc)2 + N Me S HN R R'' R' R' NH O MK-677 Merck T, 1997, 53, 10983 (Larock, R.C. J. Org. Chem. 1998, 63, 7652) I Pharmaceutical Applications of the Fischer Indole Synthesis: N S O O N H N H CH2R' + HCl CO2R'' D Buchwald Modification: Br NHNH2 R'' Base N R Me Me N H Imitrex® Glaxo e.g. Heterocycles, 2000, 53, 665 Sundberg, R.J. Indoles; Buchwald S.L. J. Am. Chem. Soc. 1998, 120, 6621 – Base additives vary by reaction – High functional group tolerance – Bulkier R group placed at C–2 of the indole Bucherer, H.T. J. Prakt. Chem. 1908, 77, 403; Japp, F.R. ; Maitland, W.J. J. Chem. Soc. 1903, 83, 273 Richter Indole and Pyrrole Synthesis: " Disconnection 3–Misc.: Disconnection 5: Bartoli Indole Synthesis: Stepwise: R'' + R' NO2 R' R R'' R One pot: 1. 2.2 BuLi – Mechanism? – Only works well with 2-substituted nitrobenzenes R N H 2. RCO2Me NHX X = TMS, Boc Castro Indole Synthesis: Disconnection 6: R + R N H 3. RCOCl N(TMS)2 N H 2 eq I 1. Zn 2. CuCN, LiCl Br BrMg 9/1/04 Group Meeting " CuOTf R NH2 N H RO2C N CHO TBDMSTf HO RO2C N CHO Disconnection 4: Hemetsberger Indole Synthesis: CO2R N3 N H N H O CO2R D Disconnection 7: N CO2R N H – Formed by condensation of aromatic aldehyde with a-azoester with NaOEt, under very carefully controlled conditions to prevent N2 loss – Yields = 30's – 90's – Unknown mechanism – not a nitrene insertion reaction Bartoli, G. Tetrahedron Lett. 1989, 30, 2129; Castro, C.E. J Org. Chem. 1966, 31, 4071 O TsOH R Sundberg, R.J. Indoles. N H OH N H R Richter Indole and Pyrrole Synthesis: " Disconnection 8a: 9/1/04 Group Meeting " Disconnection 8b: Heck Approach: More Palladium: X R R X Pdo CO2R CO2R Pd(OAc)2 N R' N R' N R' – Yields = 70's – 90's – Choice of base and protecting group on the nitrogen can affect the yield N R' – Works best with an EWG on the olefin Photochemical: More Palladium: hn R X Pdo; N H RZnCl N H – Can intercept the intermediate organopalladium species – Any organozinc reagent can be used to transmetallate. N H Disconnection 8c: Acid Catalyzed Cyclization: O R Mori-Ban Indole Synthesis: R (Ph3P)4Ni N Me N Me X = TFA, alkyl, solfonyl LA N X N X Cl N H taut. – LA commonly ZnCl2 – Can also use ketals with BF3 or TiCl4 Disconnection 8–Misc.: – Requires stoichiometric nickel – Yields only about 50%. Graebe-Ullmann Carbazole Synthesis: N N N Ph D N H – Mechanism? – Generally problematic and not widely applicable Sundberg, R.J. Indoles; Mori, M.; Ban, Y. Tetrahedron Lett. 1976, 17, 1803. Sundberg, R.J. Indoles; Graebe, C.; Ullmann, F. Ann. 1896, 291, 16 Richter Indole and Pyrrole Synthesis: " Disconnection 9a: Disconnection 10: Madelung Synthesis: Diels-Alder: R R N H EDG EDG 3 BuLi EWG N H O N H – Yields = 40's – 90's N H EWG – Works best when matched Disconnection 11: Variant of Madelung: X N H Base Diels-Alder: N H O EWG EWG – Where X is a phosphorous, nitrogen, silicon, or oxygen to stabilize a negative charge – If X is phosphorous, then it is an intramolecular Wittig. N H N H EDG EDG – Works best when matched Disconnection 9b: Disconnection 12: Base/Acid Catalyzed closure: Nenitzescu Synthesis: O N Ar R Base N Ar H R' D R'' O N H HO R' N R'' R – Mechanism? – Substitution on the quinone ring is acceptable and predictable – Substitution on the enamine is tolerated, but R' is best as an EWG – Used in the synthesis of LY311727 (Lilly) Disconnection 9c: McMurray Type Closures: O TiCl3 O N Ar R' O Acid or R Sundberg, R.J. Indoles. 9/1/04 Group Meeting " O Zn N Ar MeO CO2NH2 P OMe N Bn Sundberg, R.J. Indoles; Ninetzescu, C.D. Bull. Soc. Chim. Romania. 1929, 11, 37; J. Org. Chem. 1996, 61, 9055 Richter Indole and Pyrrole Synthesis: " " Disconnection 13: Pyrrole: Wolff Rearrrangement: Nature: – Very abundant in nature – Found in porphyrins, natural products, drugs – Isolated industrially from coal tar and/or bone oil O N2 CO2H hn N H N 9/1/04 Group Meeting Reactivity: C–3 From Quinolines: C–2 CHO hn N+ O- Ph O N Ph Ph N H Katritzky, A.R. Handbook of Heterocyclic Chemistry. Pergamon. San Diego, 2000 N H – Protonation occurs at C–2 preferentially – Easily oxidized (atmospheric oxygen) – very electron rich – Quickly colorizes upon exposure to air – Less prone to oxidation of EWG's on the ring – less electron rich – Decomposition and polymerization rapid with acid – Electrophilic attack occurs at C–2 (site of most electron density) – C–3 is the second most reactive site on the molecule – pKa of N–H is 23 (DMSO) – N–1 is the most nucleophilic site on pyrrole Mass, G. Science of Synthesis. Thieme. New York: 2001 Richter Indole and Pyrrole Synthesis: " Ring Expansion N H " N H N H N H N H 18 17 16 1 N H 2 15 3 14 N H N H 4 N H 13 5 12 N H N H 6 11 10 9 8 7 N H N H N H N H Ring Contraction N H N H 9/1/04 Group Meeting Richter Indole and Pyrrole Synthesis: " 9/1/04 Group Meeting " Disconnection 1: Disconnection 3: Palladium with Alkenes: Piloty Synthesis: Me PdCl2 Et OH O N Me H2NNH2 CoI2, D O Et N H R N H – Mechanism? – Exists mainly in the tautomeric form Disconnection 4: Palladium with Alkynes: Thermal Cyclization: Pd/C TEA, MeOH N Cbz CO2Et N Cbz D N3 CO2Et N H Carbene Insertion: Disconnection 2: Ph CN + Ts O CN NaOEt Ph R R' 1. TMSCLiN2 R R'' R'' 2. MnO2 R' CO2Et NC NHR''' N R''' N H Disconnection 5: Disconnection 3: Rhodium: Ph HO Ph NH4OAc Ph AcOH + Ph O Ph Ph Ph O Ph Mass, G. Science of Synthesis. Thieme. New York: 2001 H2, CO Ph N H NH2 [Rh], PPh3 Ph N H Richter Indole and Pyrrole Synthesis: " Disconnection 5 Continued: Disconnection 6: Iron: Barton-Zard Pyrrole Synthesis: Ph Fe2(CO)9 NPh R base + CN R' R' CO2R'' CO2R'' N R Me MeLi; tBuBr N H Me – Original Barton-Zard used NO2 as the LG. Bis-Nucleophile/Bis-Electrophile: Niobium: Ph OMe Ph Ph LG R Ph 9/1/04 Group Meeting " NbCl3 + NR O Ph Ph RHN OMe Ph Ph + EtO2C O N KOtBu CN Ph O O CN Ph N Ph Nb Extrusion (Huisgen Pyrrole Synthesis): Ph Me Me N R Ph Ph R R'''NC D R'' Ph R' NHR''' N R Knorr Pyrrole Synthesis: O R' From Cyclopropenes: R' Ar N COR'' O R' + R + R' Ph N Disconnection 7: R'' Cl DMAD CO2Me MeO2C – X is usually S or NR 2-Aminopyrroles: N X N+ N R R' -O Ph ONb NH2 R'' O R''' R R''' N H Trofimov Pyrrole Synthesis: hn R or D Ar N R NOH Base N H Mass, G. Science of Synthesis. Ferriera, V. Org. Prep. Proceed. Int. 2001, 33, 411; Katritzky, A.R. Handbook of Heterocyclic Chemistry, 2nd ed. Pergamon. San Diego: 2000 Richter Indole and Pyrrole Synthesis: " Disconnection 7 Continued: Disconnection 8: Hantzsch Pyrrole Synthesis: Paal-Knorr Pyrrole Synthesis: + Br R O R'' R'' O H2N + RNH2 R' R R'' R' R'' R' O N H R 9/1/04 Group Meeting " N R – Can access the diketone in-situ by reduction of the bis-cyano compound – Can access via reduction of the g-nitro ketone Formal 3+2: Bn R R N Palladium: D PdCl2, Cu(OAc)2; + N Bn NO2 N Bn AgBF4, PPh3, BnNH2 Stepwise: R + R I OAc 1. Base 2. Acid O R O NNMe2 R N Bn BnNH2 O 3. H2, Ni Pd(PPh3)4 N H Zav'Yalov Pyrrole Synthesis: R Ugi Approach: NC Ph CN HO2C O NC R' R Ph R' O NH3Cl O O N O R NMe2 HO2C O NH2 TEA R'' CO2H HN RCHO Ph NC MeO CH2N2 N R R' NH + R'' R Ac2O CONCy Mass, G. Science of Synthesis. Ferriera, V. Org. Prep. Proceed. Int. 2001, 33, 411; Katritzky, A.R. Handbook of Heterocyclic Chemistry, 2nd ed. Pergamon. San Diego: 2000 R'' N Ac Richter Indole and Pyrrole Synthesis: " Disconnection 9: Disconnection 11: Wolff Rearrangement/Photolytic: O hn R CO2H hn N CN N Bn N H N3 O- CO2Et Reductive Ring Contractions: N Zn Cl N CO2Et MeO CO2Me MeO2C N N HOAc 1. BuLi; Br OMe 2. BuLi; Ph NPh N H R Ph Bt OMe OMe Ph Ph TsN CO2Me 3. NaOMe Zn CO2Me acid NHPh Ph 1. PPh3 2. DDQ Ph CO2Me + • OMe HOAc MeO C 2 N R'' Disconnection 12: Allenes: MeO2C R' CO2Et OMe N N+ H R' EtO2C Cu(acac)2 N H O N N2 NHR'' + N2 Ar 9/1/04 Group Meeting " Rhodium: CN R'' R' N H CO2Et + R Disconnection 10: Rh2(CO)12 R'' O Ph N H O R' CO2Et R N H Cobalt: Base Catalyzed: R R N KOtBu Ph R OH N H Cl 1. Co2(CO)6 2. BF3•OEt2 3. MeO2C ( )n H N R Ph Me McMurray Type Coupling: R' R'' O O LDA, DDQ n=2 R NH CO2Me N ( )n R TiCl3 Zn R' R'' n=1 Bn N H MeO2C Ph R N H R MeO2C N H Mass, G. Science of Synthesis. Ferriera, V. Org. Prep. Proceed. Int. 2001, 33, 411; Katritzky, A.R. Handbook of Heterocyclic Chemistry, 2nd ed. Pergamon. San Diego: 2000 N Ph Richter Indole and Pyrrole Synthesis: " Disconnection 13: H Ph Disconnection 16: CN CO2Me CN CO2Me + O 9/1/04 Group Meeting " Ph RCHO PhNC R'NH2 R''CO2H MeO2C DBU CO2Me N H R'' R' Y X X O Y O- N+ R R'' R N R' Disconnection 14: R' RNH2 EtNO2 R' SmCl3 Disconnection 17: R' R' 1. BuLi NR O Me R' R'' R'' 2. O N R Br R O R R'NH2 N R' R Disconnection 15: Disconnection 18: Palladium: Ph Ph + TMSCN From Cyclopropanes: Ph PdCl2 Ph Ph N(TMS)2 or NiCl2 NC CO2Me N H hn N Ph Titanium: R R' Ti(OiPr)4 2 iPrMgCl R Ti(OiPr)2 R'' NR''' R' R'' N R''' PhS BzO NR Ph Cp2(Me)ZrCl Ph TMS Cp2Zr Ph Ph NTMS CO SPh SPh Zirconium: Li N N R' From Cyclobutanes: R CO R' MeO2C AlEt2Cl N R Ph N H Mass, G. Science of Synthesis. Ferriera, V. Org. Prep. Proceed. Int. 2001, 33, 411; Katritzky, A.R. Handbook of Heterocyclic Chemistry, 2nd ed. Pergamon. San Diego: 2000 R'' Richter Indole and Pyrrole Synthesis: " Selected Syntheses: Selected Syntheses: Strychnine: Woodward (Classics I) Isochrysohermidin: Boger (Classics II) OH CO2Me N MeO H N H O NMe MeO O H MeO2C N HO Me HO O OMe OMe O CO2Me MeO2C N PPA OMe N H OMe NHNH2 9/1/04 Group Meeting " Fischer Indole Synthesis MeO MeO MeO N Disconnection 9 MeO CO2Me CO2Me CO2Me MeO2C MeO2C N N Strychnine: Overman (Classics I) NH N H CO2Me Aspidophytine: Corey (Classics II) N N H N O H MeO HO O N Me H N N NO2 HO NH2 O MeO H N H H MeO2C H MeO2C OH Disconnection 1a MeO OH Syntheses were only included if they synthesized the indole or pyrrole NO2 Fe, AcOH silica gel MeO OMe OMe Batcho-Leimgruber Indole Synthesis Variant N H Richter Indole and Pyrrole Synthesis: " 9/1/04 Group Meeting " Selected Syntheses: Selected Syntheses: Vinblastine: Fukuyama (Classics II) OH N Lipitor®: Pfizer (Li, J.J. Contemporary Drug Synthesis. Wiley. 2004) -O OH 2C OH H N N H MeO2C MeO F OH N Me H NH OAc CO2Me O OTHP THPO nBu3SnH S MsO N H N H CO2Bn AIBN CO2Bn O N H MsO CO2Bn CO2Bn O O F Fukuyama Indole Synthesis CONHPh F N Mitosene: Rebek (J. Org. Chem. 1984, 49, 5164) O N OCONH2 H2N O HO2C Ac2O CONHPh O Huisgen Pyrrole Synthesis OMe N O NH2 EtO OEt OMeO2C O DMAD MeO2C MeO2C N+ CO2Me O O N OAc F OAc Huisgen Pyrrole Synthesis Syntheses were only included if they synthesized the indole or pyrrole CONHPh H2N OEt F OEt Paal-Knorr Pyrrole Synthesis N CONHPh Richter Indole and Pyrrole Synthesis: " 9/1/04 Group Meeting " Selected Syntheses: Selected Syntheses: Axert®: Janssen (Li, J.J. Contemporary Drug Synthesis. Wiley. 2004) Ketorolac®: Syntex (Muchowski, Adv. Med. Chem. 1992, 1, 109) – 1st Generation strategies utilize pyrrole syntheses – Process synthesis uses annulation starting from pyrrole N O NH2 S O O N N H H CO2H CO2Me N O I S O N Bu4NBr TEA N O CO2Me Pd(OAc)2 CF3 O O HO N H Disconnection 8a Br CO2Me N H CO2Me O CO2Me S CO2Me N HO Hantzsch Pyrrole Synthesis Hapalindole G: Fukuyama (J. Am. Chem. Soc. 1994, 116, 3125) Cl H H NC H MeO H2N N H O 1. Me H O S H OMe Li O H 2. HgCl2, HClO4 NHAlloc Disconnection 1a OMe AcOH N OH HO Paal-Knorr Pyrrole Synthesis Cl Cl O N Alloc Syntheses were only included if they synthesized the indole or pyrrole