Senior High School NOT General Biology 1 Quarter 1 - Module 1 Cell: the basic unit of life Department of Education ● Republic of the Philippines 1 General Biology 1- Grade 12 Alternative Delivery Mode Quarter 1 - Module 1: Cell: the basic unit of life First Edition, 2020 Republic Act 8293, section 176 states that: No copyright shall subsist in any work of the Government of the Philippines. However, prior approval of the government agency or office wherein the work is created shall be necessary for exploitation of such work for profit. Such agency or office may, among other things, impose as a condition the payment of royalty. Borrowed materials (i.e., songs, stories, poems, pictures, photos, brand names, trademarks, etc.) included in this book are owned by their respective copyright holders. Every effort has been exerted to locate and seek permission to use these materials from their respective copyright owners. The publisher and authors do not represent nor claim ownership over them. Published by the Department of Education – Division of Cagayan de Oro Schools Division Superintendent: Dr. Cherry Mae L. Limbaco, CESO V Development Team of the Module Author: Romer T. Aguirre, Mark Richie S. Lasque Reviewers: Jean S. Macasero, Shirley Merida, Duque Caguindangan, Eleanor Rollan, Rosemarie Dullente, Marife Ramos, January Gay Valenzona, Mary Sieras, Arnold Langam, Amelito Bucod Illustrators and Layout Artists: Romer T. Aguirre, Mark Richie S. Lasque Management Team Chairperson: Cherry Mae L. Limbaco, Ph.D., CESO V Schools Division Superintendent Co-Chairperson: Alicia E. Anghay, Ph.D., CESE Assistant Schools Division Superintendent Members Lorebina C. Carrasco, OIC-CID Chief Jean S. Macasero, EPS- Science Joel D. Potane, LRMDS Manager Lanie O. Signo, Librarian II Gemma Pajayon, PDO II Evelyn Q. Sumanda, School Head Cely B. Labadan, School Head Printed in the Philippines by Department of Education – Division of Cagayan de Oro City Office Address: Fr. William F. Masterson Ave Upper Balulang, Cagayan de Oro Telefax: (08822)855-0048 E-mail Address: cagayandeoro.city@deped.gov.ph 2 Senior High School Senior High School General Biology 1 Quarter 1 - Module 1: Cell: the basic unit of life This instructional material was collaboratively developed and reviewed by educators from public schools. We encourage teachers and other education stakeholders to email their feedback, comments, and recommendations to the Department of Education at action@ deped.gov.ph. We value your feedback and recommendations. Department of Education ● Republic of the Philippines 3 This page is intentionally blank 4 Table of Contents What This Module is About ....................................................................................................................... i What I Need to Know .................................................................................................................................. ii How to Learn from this Module............................................................................................................... ii Icons of this Module ................................................................................................................................... iii What I Know ................................................................................................................................................iii First Quarter Lesson 1: Cell Theory What I Need to Know ..................................................................................................... 14 What‘s New: Guess What?.......................................................................................... 15 What Is It: Learning Concepts ................................................................................. 16 What‘s More: Synthesizing Information .................................................................. 17 What‘s New: Reflection…. .......................................................................................... 18 What I Have Learned: ................................................................................................... 18 What I Can Do: Performance Task and Enrichment Activity ............................ 19 Lesson 2: Cell Structure and Functions What I Need to Know ..................................................................................................... 20 What‘s New: .................................................................................................................... 21 What Is It: Learning Concepts .................................................................................... 23 What‘s More: ................................................................................................................... 24 What I Can Do: …………………………………….........................................25 Lesson 3: Prokaryotic vs Eukaryotic Cells What I Need to Know ..................................................................................................... 26 What‘s New: .................................................................................................................... 26 What Is It: Learning Concepts .................................................................................... 27 What‘s More: ................................................................................................................... 28 What I Have Learned: .................................................................................................. 28 What I Can Do: …………………………………….........................................29 5 Lesson 4: Cell Types and Cell Modifications What I Need to Know ..................................................................................................... 30 What‘s New: .................................................................................................................... 30 What Is It: Learning Concepts .................................................................................... 31 What‘s More: ................................................................................................................... 34 What I Have Learned: .................................................................................................. 34 What I Can Do: …………………………………….........................................34 Lesson 5: Cell Cycle What I Need to Know ..................................................................................................... 35 What‘s New: .................................................................................................................... 35 What Is It: Learning Concepts .................................................................................... 36 What‘s More: ................................................................................................................... 40 What I Have Learned: .................................................................................................. 41 What I Can Do: …………………………………….........................................41 Summary…………………………………………………………………………………………….43 Assesment…………………………………………………………………………………………...44 Key to Answers…………………………………………………………………………………..….45 References ................................................................................................................................................. .. 52 Lesson 6: Transport Mechanisms What I Need to Know ..................................................................................................... 54 6.1 Structural Components of the Cell Membrane What I Know ..................................................................................................................... 55 What‘s In (REVIEW): .................................................................................................... 57 What‘s New: .................................................................................................................... 61 What Is It: ......................................................................................................................... 61 What‘s More: ................................................................................................................... 62 What I Have Learned: .................................................................................................. 62 What I Can Do: …………………………………….........................................63 6 6.2 The Relationship of the Structure and Composition of the Cell Membrane to its Function What I Know ..................................................................................................................... 63 What‘s In (REVIEW): .................................................................................................... 65 What‘s New: .................................................................................................................... 68 What Is It: ......................................................................................................................... 68 What‘s More: ................................................................................................................... 69 What I Have Learned: .................................................................................................. 69 What I Can Do: …………………………………….........................................69 6.3 6.4 Transport Mechanisms in Cells Endocytosis vs. Exocytosis What I Know ..................................................................................................................... 70 What‘s In (REVIEW): .................................................................................................... 72 What‘s New: .................................................................................................................... 81 What Is It: ......................................................................................................................... 81 What‘s More: ................................................................................................................... 81 What I Have Learned: .................................................................................................. 82 What I Can Do: …………………………………….........................................82 Assesment…………………………………………………………………………………………...83 Lesson 7: Structures and Functions of Biological MoleculesEnzymes What I Need to Know..................................................................................................... 86 7.1 Description of the Components of Enzymes What I Know ..................................................................................................................... 88 What‘s In (REVIEW): .................................................................................................... 89 What‘s New: .................................................................................................................... 92 What Is It: ......................................................................................................................... 92 What‘s More: ................................................................................................................... 93 What I Have Learned: .................................................................................................. 93 What I Can Do: …………………………………….........................................94 7 7.2 Oxidation/Reduction Reactions What I Know ..................................................................................................................... 95 What‘s In (REVIEW): .................................................................................................... 95 What‘s New: .................................................................................................................... 97 What Is It: ......................................................................................................................... 97 What I Have Learned: .................................................................................................. 98 7.3 Determining the Factors Affecting Enzyme Activity What I Know ..................................................................................................................... 99 What‘s In (REVIEW): .................................................................................................... 100 What‘s New: .................................................................................................................... 105 What Is It: ......................................................................................................................... 105 What I Have Learned: .................................................................................................. 105 What I Can Do: …………………………………….........................................106 Assessment: (Post-Test) ............................................................................................. ..106 Key to Answers......................................................................................................................................... .. 110 References ................................................................................................................................................. .. 112 8 This page is intentionally blank 9 Module 1 Cell: the basic unit life What This Module is About This module demonstrates your understanding of the cell theory, cell structure and functions, prokaryotic vs eukaryotic cells, cell types and modifications, cell cycle and transport mechanisms which are the major topics of cellular biology. Learners will be looking into the processes that are important to sustain life. This module will help you explore the key concepts on topics and immersed you in various activities and hands-on tasks that will help you answer the questions pertaining to the cell theory, structure and functions, cell types and modifications, cell cycle and transport mechanisms. This module has seven (7) lessons: Lesson 1- Cell Theory Lesson 2- Cell Structure and Functions Lesson 3- Prokaryotic vs Eukaryotic Cells Lesson 4- Cell Types and Cell Modifications Lesson 5- Cell Cycle Lesson 6- Transport Mechanisms Lesson 7- Structures and Functions of Biological Molecules-Enzymes What I Need to Know After going through this module, you are expected to: 1. Explain the postulates of the Cell Theory (STEM_BIO11/12-Ia-c-1). 2. Describe the structure and function of major and subcellular organelles (STEM_BIO11/12-Ia-c-2). 3. Distinguish prokaryotic and eukaryotic cells according to their distinguishing features (STEM_BIO11/12-Ia-c-3). 4. Classify different cell types (of plant/animal tissues) and specify the functions of each (STEM_BIO11/12-Ia-c-4). 5. Describe some cell modifications that lead to adaptation to carry out specialized functions (STEM_BIO11/12-Ia-c-5). 6. Characterize the phases (STEM_BIO11/12-Id-f-6). of the cell cycle and their control points 7. Describe the structural components of the cell membrane (STEM_BIO11/12-Ig-h11) 8. Relate the structure and composition of the cell membrane to its function (STEM_BIO11/12-Ig-h-12) 10 9. Explain transport mechanisms in cells (diffusion osmosis, facilitated transport, active transport) (STEM_BIO11/12-Ig-h-13). 10. Differentiate exocytosis and endocytosis (STEM_BIO11/12-Ig-h-14) 11. Describe the components of an enzyme (STEM_BIO11/12-Ii-j-17) 12. Explain oxidation/reduction reactions (STEM_BIO11/12-Ii-j-18) 13. Determine how factors such as pH, temperature, and substrate affect enzyme activity (STEM_BIO11/12-Ii-j-19) How to Learn from this Module 11 To achieve the learning competencies cited above, you are to do the following: • Take your time reading the lessons carefully. • Follow the directions and/or instructions in the activities and exercises diligently. • Answer all the given tests and exercises. Icons of this Module What I Need to Know This part contains learning objectives that are set for you to learn as you go along the module. What I know This is an assessment as to your level of knowledge to the subject matter at hand, meant specifically to gauge prior related knowledge This part connects previous lesson with that of the current one. What‘s In What‘s New An introduction of the new lesson through various activities, before it will be presented to you What is It These are discussions of the activities as a way to deepen your discovery and understanding of the concept. What‘s More These are follow-up activities that are intended for you to practice further in order to master the competencies. What I Have Learned Activities designed to process what you have learned from the lesson What I can do These are tasks that are designed to showcase your skills and knowledge gained, and applied into real-life concerns and situations. II What I Know 12 MULTIPLE CHOICE: Directions: Read and understand each item and choose the letter of the correct answer. Write your answers on a separate sheet of paper. __1. Which level of organization is the basic unit of life? A. Cell B. Tissue C. Organ D. System __2. Which of the following is NOT a postulate of a unified cell theory? A. All living things are composed of cells B. Cells are the basic unit of life C. All cells undergo complete development D. All new cells arise from existing cells __3. Who coined the term cell for the box like structure he observed when viewing cork tissue? A. Matthias Schleiden B. Theodor Schwann C. Rudolf Virchow D. Robert Hooke __4. In many cells, the structure that controls the cell activities is the _____________. A. Cell Membrane B. Organelle C. Nucleolus D. Nucleus __5. Which part of the cell serves as venue for cellular respiration and is known as the powerhouse of the cell? A. Nucleolus B. Chromosome C. Mitochondrion D. Nucleus __6. Which type of tissue would be found in the epidermis and form the lining of internal organs such as the intestines? A. Nervous tissue B. Muscular tissue C. Connective tissue D. Epithelial tissue __7. The process by which the nucleus divides to produce two new nuclei that results in two daughter cells that are genetically identical to each other and to the parental cell from which they came. A. Meiosis B. Interphase C. Mitosis D. Cytokinesis __8. A type of passive transport which relies on carrier proteins in order for the substances to move down their concentration gradient. A. Active transport B. Facilitated diffusion C. Osmosis D. Sodium-potassium pump __9. Which of the following is an example of passive transport which occurs when particles move from an area of higher concentration to an area of lower concentration? A. Phagocytosis B. Pinocytosis 13 C. Diffusion D. Osmosis __10. This process utilizes additional metabolic energy against the concentration gradient to move molecules across the membrane from a region of lower concentration to a region of higher concentration. A. Active Transport B. Passive Transport C. Osmosis D. Exocytosis 14 Lesson 1 The Cell Theory What I Need to Know Cells are the basic building blocks of all living things. The human body is composed of trillions of cells. They provide structure for the body, take in nutrients from food, convert those nutrients into energy, and carry out specialized functions. Cells also contain the body’s hereditary material and can make copies of themselves. Cells have many parts, each with a different function. Some of these parts, called organelles, are specialized structures that perform certain tasks within the cell. In this lesson, you are to explain the postulates of the cell theory. The three postulates of the cell theory offer the basis on how an organism is considered as a living thing. Plant cell Animal cell 15 What’s New Guess What? Direction: Complete the three basic components of the cell theory by arranging these words in proper order. All your answers must be written on a separate sheet of paper. 1. LIVING OF CELLS OR ONE ALL MORE THINGS COMPOSED ARE 2. IS UNIT THE BASIC CELL LIFE OF THE 3. FROM ARISE CELLS PRE-EXISTING CELLS ALL 16 What Is It Prior to the invention of the very first microscope, everything that could not be seen by the naked eye was unexplainable. In 1665, English physicist Robert Hooke used of the first light microscopes to look at thin slices of plant tissues. One of these, a slice of cork, especially caught his eye. Under the microscope, cork seemed to be made of thousands of tiny chambers. Hooke called this chambers ―cells‖ because they reminded him of a monastery‘s tiny rooms, which were also known as cells. Until 1676, Anton van Leeuwenhoek published his observations on tiny living organisms which he named animalcules. It was believed that Leeuwenhoek was the first to observe under his microscope the structure of a red blood cell of different animals as well as a sperm cell. One of the leading botanists in his time, Robert Brown in 1831 was able to compare diverse kinds of plant specimens under the microscope. He markedly indicated that there is a common thing about them-they are all composed of cells, and inside the cell is a dark dense spot which he termed as the nucleus. A few years later, German botanist Matthias Schleiden (1838) concluded that all plant parts are made of cells. Theodor Schwann (1839), also a botanist and a close friend of Schleiden, stated that all animal tissues are composed of cells, too. In 1858, Rudolf Virchow concluded that all cells come from pre-existing cells. Figure 1.1. Structure of cork using a microscope as seen by Robert Hooke (1665) 17 The discoveries made by Hooke, Leeuwenhoek, Schleiden, Schwann, Virchow, and others led to the formulation of the cell theory. The cell theory describes the properties of all cells. This theory can be summed up into three basic components: (1) all living things are composed of one or more cells; (2) the cell is the basic unit of life; and (3) all cells arise from pre-existing cells. Now, that you have an understanding of the history of the cell theory, answer the activity that follows. What’s More A. The Discovery of Cell Matthias Schleiden Anton van Leeuwenhoek Robert Hooke Rudolf Virchow Theodor Schwann Direction. Research on the ―Cell Theory‖ which tells about the discovery of cell. Take note of the scientists and their respective works. Choose from the box which scientist gave the following statements. __________1. All cells come from pre-existing cells (1858). __________2. All animals are made up of cells (1839). __________3. All plants are made up of cells (1838). __________4. Tiny living organisms are observed (1676). __________5. Thousands of tiny empty chambers in cork are called cells (1665). 18 What’s New Reflection: Answer the following questions on a separate sheet of paper. 1. What is the cell theory and what does it state? _________________________________________________________________ 2. What do we call the basic generalizations that are accepted by modern science about cell? _________________________________________________________________ 3. Among the scientists, who advanced the cell theory with his conclusion that cells could only come from other cells? _________________________________________________________________ 4. What discovery is Van Leeuwenhoek noted for? _________________________________________________________________ 5. What caused scientists to discover the existence of cells? _________________________________________________________________ What I Have Learned Direction: The figure below indicates events that lead up to the cell theory. Complete the table by filling in the blank spaces. Date Scientist Discovery 1665 a. Observed the remains of dead plant cells b. Anton van Leeuwenhoek c. 1838 Matthias Schleiden d. e. f. Stated that all animals are made of cells 1858 g. h. 19 What I Can Do Performance Task: Research on the theory of spontaneous generation or theory of abiogenesis by Stanley Miller and Francesco Redi and Louis Pasteur‘s experiment. Compare the two theories on the origin of life. Enrichment Activity: Watch a video through YouTube link below entitled “Theories on the Origin of Life”, https://www.youtube.com/watch?v=2QLW7I_XBqo https://www.youtube.com/watch?v=NNijmxsKGbc 20 Lesson 2 Cell Structure and Functions What’s In In lesson 1, you have learned about the cell theory and the discoveries made by scientists. In this next topic, you will learn on the cell structure and functions that carry out basic life processes. What I Need to Know All living organisms are made up of one or many cells. The cells are the building block of life just as atoms are the basic building blocks of all matter. Each cell contains materials that carry out basic life processes. Cell structures can only be observed under high magnification electron microscope and are separated internally into numerous membranous compartments called organelles (little organs). These organelles perform a variety of functions like production of proteins, storage of important materials, harvesting energy, repairing cell parts, digestion of substances, and maintaining the shape and structure of the cell. In this lesson, you will describe the structure and function of major subcellular organelles. 21 What’s New Direction: Write all the descriptions of cell organelles which are shown through the illustration. 1. Control center, stores DNA 2. Center of the nucleus, produces ribosomes 3. Controls passage of organic molecules, ions, water, oxygen and wastes into and out of the cell. 4. Provides structure to cell; gel-like fluid in which organelles are found 5. ―Powerhouse of the cell‖, releases energy from food 6. Small structures for protein synthesis 22 7. Modifies proteins and synthesizes lipids 8. Modifies, sorts, tags, packages and Distributes lipids and proteins 9. Garbage disposal, digestion of macromolecules; recycling or worn out organelles 10. Storage and transport; digestive function in plant cells. 11. Site of photosynthesis, trap sunlight to make food 12. Protection, structural support and maintenance of cell shape 23 What Is It Cell Structure and Functions Cells’ Structures Functions 1. Cell Membrane 1. Separates cell from external environment; controls passage of organic molecules, ions, water, oxygen and wastes into and out of the cell 2. Cytoplasm 2. Provides structure to cell; site of many metabolic reactions; medium in which organelles are found 3. Nucleolus 3. Location of DNA 4. Nucleus 4. Cell organelle that houses DNA and directs synthesis of ribosomes and proteins 5. Ribosomes 5. Protein synthesis 6. Mitochondria 6. ATP production or cellular respiration 7. Peroxisomes 7. Oxidizes and breaks down fatty acids and amino acids and detoxifies poisons 8. Vesicles and Vacuoles 8. Storage and transport; digestive function in plant cells 9. Centrosome 9. Unspecified role in cell division in animal cells; organizing center of microtubules in animal cells 10. Lysosomes 10. Digestion of macromolecules; recycling or worn out organelles 11. Cell wall 11. Protection, structural support and maintenance of cell shape 12. Chloroplast 12. Photosynthesis 13. Endoplasmic reticulum 13. Modifies proteins and synthesizes lipids 14. Golgi apparatus 14. Modifies, sorts, tags, packages and distributes lipids and proteins 15. Cytoskeleton 15. Maintains cell‘s shape, secure organelles on specific positions, allows cytoplasm and vesicles to move within the cell, and enables unicellular organisms to move independently 16. Flagella 16. Cellular locomotion 17. Cilia 17. Cellular locomotion, movement of particles along extracellular surface of plasma membrane, and filtration 24 What’s More Direction: Below are drawing of plant and animal cells. Label the parts of the cell. Write your answers on a separate sheet of paper according to letters and numbers. PLANT AND ANIMAL CELL What I Have Learned 25 Direction: Using a Venn Diagram or Tabular form show the difference between a plant cell and animal cell. Features Cell Shape Cell Wall Cell Membrane Nucleus Vacuole Plastids Chloroplast Endoplasmic Reticulum Ribosomes Mitichondria Plant Cell Rectangular (fixed shape) Present and is formed of cellulose Present and is covered by the cell wall Present A large central vacuole taking up 90% of the cell volume Present Present and make their own food Present Present Present Animal Cell Round (irregular shape) Absent Present Present One or more small vacuoles Present Absent Present Present Present What I Can Do Direction: Construct a 3D model of a plant/animal cell using indigenous or recyclable materials and label the parts. 26 Lesson 3 Prokaryotic vs Eukaryotic Cells What’s In In lesson 2, you have learned about the cell structure and function of major and subcellular organelles. In this next topic, you will learn on prokaryotic and eukaryotic cells according to their distinguishing features. What I Need to Know Prokaryotes vs Eukaryotes Most living things you know such as animals and plants are multicellular organisms. Some living things are made up of only single cell. Single-celled or unicellular organisms include the bacteria, some protists, and some fungi. Even though composed of single cells, these organisms carry out all the functions necessary for life. In different organisms, cells also vary in sizes, shapes, parts, and functions. But they all have one thing in common: they make up all living things and they are living. What’s New Prokaryote Eukaryote Direction: In the following matrix, put a check in the box to show the organelle is present in prokaryotic or eukaryotic cells, or both, and state in once sentence what function of the organelle is. 27 Organelle Cell membrane Prokaryote Eukaryote Function Cell wall Nucleus Mitochondria chloroplast Endoplasmic reticulum (smooth) Golgi apparatus Lysosomes Ribosomes Endoplasmic reticulum (rough) Vacuole What Is It There are two kinds of organisms according to their cell structure, the prokaryotes and eukaryotes. The difference between prokaryotic and eukaryotic organisms is said to be the most important distinction among the groups of living things. Prokaryotes are single-celled organisms that lack a membrane-bound nucleus, mitochondria, and all other organelles. Its name comes from the Greek words pro, which means ―before‖, and karyon, which means ―nut or kernel‖. Eukaryotes are organisms with cells that contain membrane-bound nucleus and other membrane-bound organelles. The nucleus of a eukaryotic cell contains the genetic material (DNA), enclosed by a nuclear envelope. Other membrane-bound organelles are mitochondria, Golgi apparatus, and chloroplast found in photosynthetic organisms such as algae and plants. There are also unicellular eukaryotes known as protozoa. All other eukaryotes are multicellular organisms such as plants, animals, and fungi. 28 What’s More For the chart below, place a check in the box if the cell has that component. Organelle Vacuole Chloroplast Ribosome Mitochondria DNA Endoplasmic Reticulum Cell Wall Golgi Appratus Plant Animal Bacteria What I Have Learned Directions: On the lines below, write about what you‘ve learned by doing the activities. Be as specific as possible and use COMPLETE SENTENCES. 1. Let me tell you some of the important things I‘ve learned about prokaryotic and eukaryotic cells. First, I‘ll start with the difference between prokaryotic and eukaryotic cells _________________________________________________________________ _________________________________________________________________ _________________________________________________________________. 2. Next, I‘ll tell you examples of prokaryotic and eukaryotic cells _________________________________________________________________ _________________________________________________________________ _________________________________________________________________. 3. Lastly, I now really know about and understand that prokaryotic and eukaryotic cells ________________________________________________________________ ________________________________________________________________ ________________________________________________________________. 29 What I Can Do Directions: Draw a prokaryotic (bacteria) and eukaryotic cell on a separate sheet of paper. Label the prominent structures and if possible note the name of the species. 30 Lesson 4 Cell Types and Cell Modification What’s In In lesson 3, you have learned about the difference between prokaryotic and eukaryotic cells according to their distinguishing features. In this next topic, you will learn on the classification of different cell types and cell modifications that lead to adaptation to carry out specialized functions. What I Need to Know There are certain characteristics that all living things exhibit, the characteristics of life. Living things are made up of cells. They metabolize, grow and develop, respond to stimulus, adapt to their environment and reproduce. Life on Earth exhibits organization. The atom is smallest unit of matter, followed by molecules, which are combinations of atoms. When these molecules are grouped together, they ultimately form a cell. The cell is the basic unit of life. In multicellular, organisms like plants and animals, cells are grouped as tissues to perform a specific function. Different tissues can be grouped further and form organs. The organs form organ systems that makes the function of the body more complex and efficient. Organs system will then form the whole organisms. All living things exhibit organization, whether they are unicellular or multicellular organisms. What’s New Direction: Arrange the words according to the levels of biological organization. organ system organism 31 tissue cell What Is It There are hundreds of types of cells, but the four main types are epithelial cells, connective tissue cells, muscle cells and nerve cells. Epithelial Tissue—This type of tissue is commonly seen outside the body as coverings or as linings of organs and cavities. Epithelial tissues are characterized by closely-joined cells with tight junctions (i.e., a type of cell modification). Being tightly packed, tight junctions serve as barriers for pathogens, mechanical injuries, and fluid loss. Cells that make up epithelial tissues can have distinct arrangements: • cuboidal—for secretion • simple columnar—brick-shaped cells; for secretion and active absorption • simple squamous—plate-like cells; for exchange of material through diffusion • stratified squamous—multilayered and regenerates quickly; for protection • pseudo-stratified columnar—single layer of cells; may just look stacked because of varying height; for lining of respiratory tract; usually lined with cilia (i.e., a type of cell modification that sweeps the mucus). Figure 1: Epithelial Tissue (Source: Reece JB, U. L. (2010). Campbell Biology 10th. San Francisco (CA).) 32 Connective Tissue—These tissues are composed of the following: BLOOD —made up of plasma (i.e., liquid extracellular matrix); contains water, salts, and dissolved proteins; erythrocytes that carry oxygen (RBC), leukocytes for defense (WBC), and platelets for blood clotting. CONNECTIVE TISSUE PROPER (CTP)—made up of loose connective tissue that is found in the skin and fibrous connective tissue that is made up of collagenous fibers found in tendons and ligaments. Adipose tissues are also examples of loose connective tissues that store fats which functions to insulate the body and store energy. CARTILAGE —characterized by collagenous fibers embedded in chondroitin sulfate. Chondrocytes are the cells that secrete collagen and chondroitin sulfate. Cartilage functions as cushion between bones. BONE —mineralized connective tissue made by bone-forming cells called osteoblasts which deposit collagen. The matrix of collagen is combined with calcium, magnesium, and phosphate ions to make the bone hard. Blood vessels and nerves are found at a central canal surrounded by concentric circles of osteons. Figure 2: Connective Tissue (Source: Reece JB, U. L. (2010). Campbell Biology 10th. San Francisco (CA):.) Muscle Tissue—These tissues are composed of long cells called muscle fibers that allow the body to move voluntary or involuntary. Movement of muscles is a response to signals coming from nerve cells. In vertebrates, these muscles can be categorized into the following: • skeletal—striated; voluntary movements • cardiac—striated with intercalated disk for synchronized heart contraction; involuntary • smooth—not striated; involuntary 33 Figure 3: Muscle Tissue (Source: Reece JB, U. L. (2010). Campbell Biology 10th. San Francisco (CA):.) Nervous Tissue—These tissues are composed of nerve cells called neurons and glial cells that function as support cells. These neurons sense stimuli and transmit electrical signals throughout the animal body. Neurons connect to other neurons to send signals. The dendrite is the part of the neuron that receives impulses from other neurons while the axon is the part where the impulse is transmitted to other neurons. Figure 4: Neurons and Glial Cells (Source: Reece JB, U. L. (2010). Campbell Biology 10th. San Francisco (CA):.) 34 What’s More Direction: Match each general tissue category to the appropriate feature. Write the letter of your choice before each number. A. Connective tissue B. Epithelium C. Muscular tissue D. Nervous tissue _____1. A type of tissue that would make up the majority of the brain and spinal cord? _____2. Found in the epidermis and form the lining of internal organs such as the intestines _____3. Form the ligaments, tendons, fat and bone _____4. A type of tissue that makes up majority of the heart What I Have Learned Direction: Identify which type of connective tissue (A-C), epithelial tissue (D-F), and muscle tissue (G-I) is being described. A. _______________transport oxygen, carbon dioxide, nutrients and waste through the body by travelling through the vessels called arteries and veins. B. _______________is a type of dense connective tissue that connects muscles to bones and connects bone to bone. C. _______________is a type of connective tissue with one of the hardest extracellular matrixes that forms a protective structure used for muscle attachment. D. _______________found in respiratory tract (trachea), usually lined with cilia. E. _______________found in air sacs/alveoli of the lungs, capillaries. F. _______________found in digestive tract for secretion and active absorption G. _______________muscles of the heart; involuntary movements. H. _______________involuntary contractions of digestive tract like esophagus, stomach and intestines. I. ________________striated; voluntary movements like biceps and abdominal muscles. What I Can Do Direction: Give at least 4 examples of the four major tissue types. Be as specific as possible in giving examples. 35 Lesson Cell Cycle 5 What’s In In lesson 4, you have learned about the classification of different cell types and some cell modifications that lead to adaptation to carry out specialized functions. In this next topic, you will learn on the phases of cell cycle and their control points, stages of mitosis/meiosis, comparison and their role in the cell division cycle. What I Need to Know One of the distinct characteristics of living things is being able to preserve themselves. Cells need to undergo cycles as part of their growth and to repair or replace damaged parts. Cell cycle enables a living thing to continue its existence by multiplying itself in controlled and systematic processes. This lesson will enhance your understanding on cell cycle. This will provide learners with the concepts on the different stages of cell cycle and the two types of cell division: mitosis and meiosis and explain their significance on an organism. What’s New Direction: Label the diagram below with the following labels: Anaphase Cell division (M Phase) Cytokinesis G1 –cell grows G2- prepares for mitosis S-DNA replication Metaphase Prophase Telophase Interphase Mitosis 36 The Cell Cycle Coloring Worksheet Then on the diagram, lightly color the G1 phase light GREEN, the S phase dark BLUE, the G2 phase light BLUE, and the stages of mitosis VIOLET. Color the arrows indicating all of the interphases in BLUE. Color the part of the arrow indicating mitosis PURPLE and the part of the arrow indicating cytokinesis light VIOLET. What Is It Cell Division—involves the distribution of identical genetic material or DNA to two daughter cells. What is most remarkable is the fidelity with which the DNA is passed along, without dilution or error, from one generation to the next. Cell Division functions in reproduction, growth, and repair. Core Concepts: • All organisms consist of cells and arise from preexisting cells. • Mitosis is the process by which new cells are generated. • Meiosis is the process by which gametes are generated for reproduction. • The Cell Cycle represents all phases in the life of a cell. • DNA replication (S phase) must precede mitosis so that all daughter cells receive the same complement of chromosomes as the parent cell. • The gap phases separate mitosis from S phase. This is the time when molecular signals mediate the switch in cellular activity. • Mitosis involves the separation of copied chromosomes into separate cells. 37 • Unregulated cell division can lead to cancer. • Cell cycle checkpoints normally ensure that DNA replication and mitosis occur only when conditions are favorable and the process is working correctly. • Mutations in genes that encode cell cycle proteins can lead to unregulated growth, resulting in tumor formation and ultimately invasion of cancerous cells to other organs. The Cell Cycle control system is driven by a built-in clock that can be adjusted by external stimuli (i.e., chemical messages). Checkpoint—a critical control point in the Cell Cycle where ‗stop‘ and ‗go-ahead‘ signals can regulate the cell cycle. • Animal cells have built-in ‗stop‘ signals that halt the cell cycles and checkpoints until overridden by ‗go-ahead‘ signals. • Three major checkpoints are found in the G1, G2, and M phases of the Cell Cycle. The G1 Checkpoint—the Restriction Point • The G1 checkpoint ensures that the cell is large enough to divide and that enough nutrients are available to support the resulting daughter cells. • If a cell receives a ‗go-ahead‘ signal at the G1 checkpoint, it will usually continue with the Cell Cycle. • If the cell does not receive the ‗go-ahead‘ signal, it will exit the Cell Cycle and switch to a non-dividing state called G0. • Most cells in the human body are in the G0 phase. The G2 Checkpoint—ensures that DNA replication in S phase has been successfully completed. The Metaphase Checkpoint—ensures that all of the chromosomes are attached to the mitotic spindle by a kinetochore. Kinase—a protein which activates or deactivates another protein by phosphorylating them. Kinases give the ‗go-ahead‘ signals at the G1 and G2 checkpoints. The kinases that drive these checkpoints must themselves be activated. • The activating molecule is a cyclin, a protein that derives its name from its cyclically fluctuating concentration in the cell. Because of this requirement, these kinases are called cyclin-dependent kinases or CDKs. • Cyclins accumulate during the G1, S, and G2 phases of the Cell Cycle. • By the G2 checkpoint, enough cyclin is available to form MPF complexes (aggregations of CDK and cyclin) which initiate mitosis. • MPF functions by phosphorylating key proteins in the mitotic sequence. • Later in mitosis, MPF switches itself off by initiating a process which leads to the destruction of cyclin. • CDK, the non-cyclin part of MPF, persists in the cell as an inactive form until it associates with new cyclin molecules synthesized during the interphase of the next round of the Cell Cycle. Discuss the stages of mitosis and meiosis. Mitosis (apparent division)—is nuclear division; the process by which the nucleus divides to produce two new nuclei. Mitosis results in two daughter cells that are genetically identical to each other and to the parental cell from which they came. Cytokinesis—is the division of the cytoplasm. Both mitosis and cytokinesis last for around one to two hours. Prophase—is the preparatory stage, during prophase, centrioles move toward opposite sides of the nucleus. • The initially indistinct chromosomes begin to condense into visible threads. 38 • Chromosomes first become visible during early prophase as long, thin, and intertwined filaments but by late prophase, chromosomes are more compacted and can be clearly discerned as much shorter and rod-like structures. • As the chromosomes become more distinct, the nucleoli also become more distinct. By the end of prophase, the nucleoli become less distinct, often disappearing altogether. Metaphase—is when chromosomes become arranged so that their centromeres become aligned in one place, halfway between the two spindle poles. The long axes of the chromosomes are 90 degrees to the spindle axis. The plane of alignment is called the metaphase plate. Anaphase—is initiated by the separation of sister chromatids at their junction point at the centromere. The daughter chromosomes then move toward the poles. Telophase—is when daughter chromosomes complete their migration to the poles. The two sets of progeny chromosomes are assembled into two-groups at opposite ends of the cell. The chromosomes uncoil and assume their extended form during interphase. A nuclear membrane then forms around each chromosome group and the spindle microtubules disappear. Soon, the nucleolus reforms. Meiosis—reduces the amount of genetic information. While mitosis in diploid cells produces daughter cells with a full diploid complement, meiosis produces haploid gametes or spores with only one set of chromosomes. During sexual reproduction, gametes combine in fertilization to reconstitute the diploid complement found in parental cells. The process involves two successive divisions of a diploid nucleus. First Meiotic Division The first meiotic division results in reducing the number of chromosomes (reduction division). In most cases, the division is accompanied by cytokinesis. Prophase I—has been subdivided into five substages: leptonema, zygonema, pachynema, diplonema, and diakinesis. • Leptonema—Replicated chromosomes have coiled and are already visible. The number of chromosomes present is the same as the number in the diploid cell. • Zygonema—Homologue chromosomes begin to pair and twist around each other in a highly specific manner. The pairing is called synapsis. And because the pair consists of four chromatids it is referred to as bivalent tetrad. • Pachynema—Chromosomes become much shorter and thicker. A form of physical exchange between homologues takes place at specific regions. The process of physical exchange of a chromosome region is called crossing-over. Through the mechanism of crossing-over, the parts of the homologous chromosomes are recombined (genetic recombination). • Diplonema—The two pairs of sister chromatids begin to separate from each other. It is at this point where crossing-over is shown to have taken place. The area of contact between two non-sister chromatids, called chiasma, become evident. • Diakinesis—The four chromatids of each tetrad are even more condensed and the chiasma often terminalize or move down the chromatids to the ends. This delays the separation of homologous chromosomes. In addition, the nucleoli disappear, and the nuclear membrane begins to break down. Metaphase I—The spindle apparatus is completely formed and the microtubules are attached to the centromere regions of the homologues. The synapsed tetrads are 39 found aligned at the metaphase plate (the equatorial plane of the cell) instead of only replicated chromosomes. Anaphase I—Chromosomes in each tetrad separate and migrate toward the opposite poles. The sister chromatids (dyads) remain attached at their respective centromere regions. Telophase I—The dyads complete their migration to the poles. New nuclear membranes may form. In most species, cytokinesis follows, producing two daughter cells. Each has a nucleus containing only one set of chromosomes (haploid level) in a replicated form. Second Meiotic Division The events in the second meiotic division are quite similar to mitotic division. The difference lies, however, in the number of chromosomes that each daughter cell receives. While the original chromosome number is maintained in mitosis, the number is reduced to half in meiosis. Prophase II—The dyads contract. Metaphase II—The centromeres are directed to the equatorial plate and then divide. Anaphase II—The sister chromatids (monads) move away from each other and migrate to the opposite poles of the spindle fiber. Telophase II—The monads are at the poles, forming two groups of chromosomes. A nuclear membrane forms around each set of chromosomes and cytokinesis follows. The chromosomes uncoil and extend. Cytokinesis—The telophase stage of mitosis is accompanied by cytokinesis. The two nuclei are compartmentalized into separate daughter cells and complete the mitotic cell division process. In animal cells, cytokinesis occurs by the formation of a constriction in the middle of the cell until two daughter cells are formed. The constriction is often called cleavage, or cell furrow. However, in most plant cells this constriction is not evident. Instead, a new cell membrane and cell wall are assembled between the two nuclei to form a cell plate. Each side of the cell plate is coated with a cell wall that eventually forms the two progeny cells. Table 1: Comparison of Mitosis and Meiosis (Source:http://courses.washington.edu/bot113/spring/WebReadings/PdfReadings/TA BLE_COMPARING_MITOSIS_AND.pdf) 40 Disorders and Diseases • incorrect DNA copy (e.g., cancer) • chromosomes are attached to string-like spindles and begin to move to the middle of the cell (e.g., Down Syndrome, Alzheimer‘s, and Leukemia) Other chromosome abnormalities: • arise from errors in meiosis, usually meiosis I; • occur more often during egg formation (90% of the time) than during sperm formation; • become more frequent as a woman ages. • Aneuploidy—is the gain or loss of whole chromosomes. It is the most common chromosome abnormality. It is caused by non-disjunction, the failure of chromosomes to correctly separate: • homologues during meiosis I or • sister chromatids during meiosis II What’s More Direction: Complete the chart by noting what occurs in each phase of the cell cycle. Gap O (GO) Interphase Gap 1 (G1) S Phase Gap 2 (G2) Prophase Mitosis or M Phase Metaphase Anaphase Telophase Cytokinesis C 41 What I Have Learned Direction: The diagram below shows cells in various phases of the cell cycle. Note the cells are not arranged in the order in which the cell cycle occurs. Use the diagram to answer questions 1-6. Write you answer in CAPITAL letters. 1. ________Interphase (G2) 4. _________Metaphase 2. ________Prophase 5. _________Anaphase 3. ________Prometaphase 6. _________Telophase & Cytokinesis What I Can Do Direction: Gene mutations in a cell can result in uncontrolled cell division, called cancer. Exposure of cells to certain chemicals and radiation increases mutations and thus increases the chance of cancer. Research on the causes of cancers and disorders/diseases that result from the malfunction of the cell during the cell cycle and answer the following questions. 1. Define cancer _______________________________________________________________ _______________________________________________________________ _______________________________________________________________. 2. What are the causes of cancer? _______________________________________________________________ _______________________________________________________________ _______________________________________________________________. 42 Summary The importance of cell cycle is very evident that the growth and sustainability of multicellular organisms depend on this process. Cells that are damaged and lost will be replenished when cells divide. Errors in mitosis lead to an incorrect copy of the DNA which may produce deadly functional consequences depending on the error. The positive correlation with the malfunction of these processes to the onset of major diseases such as cancer, stroke, atherosclerosis, inflammation, and some neurodegenerative disorders in increasingly proven in various studies. 43 Assessment: (Post-Test) Direction: Select the letter of your choice. Write it in CAPITAL letters. Your answers should be written on a separate sheet of paper. __1. Which level of organization is the basic unit of life? A. Cell B. Tissue C. Organ D. System __2. Which of the following is NOT a postulate of a unified cell theory? A. All living things are composed of cells B. Cells are the basic unit of life C. All cells undergo complete development D. All new cells arise from existing cells __3. Who coined the term cell for the box like structure he observed when viewing cork tissue? A. Matthias Schleiden B. Theodor Schwann C. Rudolf Virchow D. Robert Hooke __4. In many cells, the structure that controls the cell activities is the _____________. A. Cell Membrane B. Organelle C. Nucleolus D. Nucleus __5. Which part of the cell serves as venue for cellular respiration and is known as the powerhouse of the cell? A. Nucleolus B. Chromosome C. Mitochondrion D. Nucleus __6. Which type of tissue would be found in the epidermis and form the lining of internal organs such as the intestines? A. Nervous tissue B. Muscular tissue C. Connective tissue D. Epithelial tissue __7. The process by which the nucleus divides to produce two new nuclei that results in two daughter cells that are genetically identical to each other and to the parental cell from which they came. A. Meiosis B. Interphase C. Mitosis D. Cytokinesis __8. A type of passive transport which relies on carrier proteins in order for the substances to move down their concentration gradient. A. Active transport B. Facilitated diffusion C. Osmosis D. Sodium-potassium pump 44 __9. Which of the following is an example of passive transport which occurs when particles move from an area of higher concentration to an area of lower concentration? A. Phagocytosis B. Pinocytosis C. Diffusion D. Osmosis __10. This process utilizes additional metabolic energy against the concentration gradient to move molecules across the membrane from a region of lower concentration to a region of higher concentration. A. Active Transport B. Passive Transport C. Osmosis D. Exocytosis Key to Answers A. Pre-test and Post test 1. A 2. C 3. D 4. D 5. C 6. D 7. C 8. B 9. C 10. A LESSON 1 CELL THEORY What’s New 1. ALL LIVING THINGS ARE COMPOSED OF ONE OR MORE CELLS. 2. THE CELL IS THE BASIC UNIT OF LIFE. 3. ALL CELLS ARISE FROM PRE-EXISTING CELLS. What’s More A. The Discovery of Cell 1. RUDOLF VIRCHOW 2. THEODOR SCHWANN 3. MATTHIAS SCHLEIDEN 4. ANTON VAN LEEUWENHOEK 5. ROBERT HOOKE 45 What’s New 1. What is the cell theory and what does it state? Cell theory states that living things are composed of one or more cells, that the cell is the basic unit of life, and that cells arise from existing cells. 2. What do we call the basic generalizations that are accepted by modern science about cell? Cell Theory 3. Among the scientists, who advanced the cell theory with his conclusion that cells could only come from other cells? Rudolf Virchow 4. What discovery is Van Leeuwenhoek noted for? Anton van Leeuwenhoek used single-lens microscopes which he made to make the first observations of bacteria and protozoa. 5. What caused scientists to discover the existence of cells? The development of the microscope. What I have Learned a. Robert Hooke b. 1676 c. Tiny living organisms which he named animalcules under his microscope. d. All plant parts are made of cells e. 1839 f. Theodor Schwann g. Rudolf Virchow h. All cells come from pre-existing cells LESSON 2 CELL STRUCTURE AND FUNCTIONS What’s New 1. Nucleus 7. Endoplasmic reticulum 2. Nucleolus 8. Golgi apparatus 3. Plasma membrane 9. Lysosomes 4. Cytoplasm 10. Vesicles and vacuoles 5. Mitochondria 11. Chloroplast 6. Ribosome 12. Cell wall 46 What’s More Plant Cell Animal Cell A – Vacuole 1. Mitochondria B - Cell Wall 2. Lysosome C - Endoplasmic Reticulum 3. Vacuole D - Nucleus 4. Cytoplasm E - Mitochondria 5. Nucleolus F - Chloroplast 6. Nucleus G - Golgi apparatus 7. Chromatin 8. Microfilaments 9. Rough Endoplasmic Reticulum 10. Golgi Apparatus 11. Intermediate filaments 12. Golgi vesicle 13. Ribosome 14. Smooth Endoplasmic Reticulum 15. Plasma Membrane What I Have Learned Venn Diagram Plant Cell Cell Shape (rectangular) Cell Wall Large Vacuoles Chloroplast Animal Cell Cell Membrane Nucleus Plastids Endoplasmic reticulum Ribosomes Mitochondria 47 Cell Shape (circular) Small Vacuoles LESSON 3 PROKARYOTIC VS EUKARYOTIC CELLS What’s New Organelle Cell membrane Cell wall Nucleus Mitochondria Prokaryote Eukaryote √ √ complex √ √ plants √ √ √ √ chloroplast Endoplasmic reticulum (smooth) Golgi apparatus Lysosomes Ribosomes Endoplasmic reticulum (rough) Vacuole √smaller Function √ √ √ larger √ √ √ Plant Animal Bacteria √ √ √ √ √ √ √ √ √ √ √ √ √ What’s More Organelle Vacuole Chloroplast Ribosome Mitochondria DNA Endoplasmic Reticulum Cell Wall Golgi Apparatus √ √ √ √ √ LESSON 4 CELL TYPES AND CELL MODIFICATION What’s new cell tissue organ system What’s More 1. D 2. B 3. A 4. C 48 organism What I Have Learned A. BLOOD B. CARTILAGE C. BONE D. PSEUDO-STRATIFIED COLUMNAR E. SIMPLE SQUAMOS F. SIMPLE COLUMNAR G. CARDIAC H. SMOOTH I. SKELETAL LESSON 5 CELL CYCLE What’s New The Cell Cycle Coloring Worksheet 49 What’s More Interphase Gap O (GO) Gap 1 (G1) S Phase Gap 2 (G2) Mitosis or M Phase Prophase Metaphase Anaphase Telophase Cytokinesis C What I Have Learned 1. D 2. A 3. F 4. C 5. E 6. B What I can do 1. Cancer is a term for diseases in which abnormal cells divide without control and can invade nearby tissues. 50 2. Cancer is caused by accumulated damage to genes. Such changes may be due to chance or to exposure to a cancer causing substances. Risk Factors: 1. Biological or internal factors such as age, gender, inherited genetic defects and skin types 2. Environmental exposure 3. Occupational risk factors including carcinogens such as chemicals, radioactive materials and asbestos 4. Lifestyle-related factors like tobacco, alcohol, UV radiation in sunlight, food-related such as nitrites and Poly aromatic hydrocarbons. 51 References Manuals/Modules/Lesson Exemplar Department of Education. The Commission on Higher Education in collaboration with Philippine Normal University. Teaching Guide for Senior High School. General Biology 1. 2016 Department of Education Central Office. Most Essential Learning Competencies (MELCs). 2020. Websites http://mrsobermeyer.weebly.com/uploads/3/8/3/0/38303365/unit_2_cells__structure___function__.pdf https://ghr.nlm.nih.gov/primer/basics/cell https://www.henhudschools.org/cms/lib/NY01813707/Centricity/Domain/1390/HW%2 012%20-%20Cell%20Theory%20I.pdf https://www.easyteacherworksheets.com/science/answerno-cells.html http://images.pcmac.org/SiSFiles/Schools/AL/SaralandCitySchools/SaralandHigh/Up loads/Forms/Tissues_Review_Packet.pdf https://www.cellsalive.com/cell_cycle_js.htm https://cpb-use1.wpmucdn.com/cobblearning.net/dist/3/4046/files/2017/07/cells_exploration_activitiesvorv1v.pdf https://www.lincnet.org/cms/lib05/MA01001239/Centricity/Domain/108/cells_exploration_acti vities.pdf https://www.henhudschools.org/cms/lib/NY01813707/Centricity/Domain/1390/HW%2012%2 0-%20Cell%20Theory%20I.pdf https://www.cusd80.com/cms/lib/AZ01001175/Centricity/Domain/4939/Chapter%203%20CK12%20Biology%20Chapter%203%20Worksheets.pdf http://images.pcmac.org/SiSFiles/Schools/AL/SaralandCitySchools/SaralandHigh/Uploads/F orms/Tissues_Review_Packet.pdf https://cpb-us-e1.wpmucdn.com/cobblearning.net/dist/3/4046/files/2017/07/10.2A-CellCycle-Coloring-KEY-28ad9ub.pdf https://www.cusd80.com/cms/lib/AZ01001175/Centricity/Domain/4939/Chapter%205%20%2 0CK-12%20Biology%20Chapter%205%20Worksheets.pdf 52 https://www.studocu.com/en-us/document/rochester-institute-of-technology/explorations-incellular-biology-and-evolution/lecture-notes/the-cell-cycle-worksheet-withanswers/3510184/view https://www.urmc.rochester.edu/life-sciences-learning-center/resourceslessons/lessons.aspx 53 Lesson Transport Mechanisms 6 What I Need to Know Learning Competencies: 1. Describe the structural components of the cell membrane (STEM_BIO11/12-Ig-h-11) 2. Relate the structure and composition of the cell membrane to its function (STEM_BIO11/12-Ig-h-12) 3. Explain transport mechanisms in cells (diffusion, osmosis, facilitated transport, active transport) (STEM_BIO11/12-Ig-h-13) 4. Differentiate exocytosis and endocytosis (STEM_BIO11/12-Ig-h-14) Performance Standards: The learners should be able to construct a cell membrane model from indigenous or recyclable materials. Introduction: With the pandemic today in the Philippines, you can just imagine our Cagayan de Oro‘s front liners and law enforcers at the check points of a city or security guards at the mall entrances (Fig. 7.a) as plasma membranes (cell membranes) which have a lot of things to do such as permitting who‘ll enter the establishment (represents the cell) or not and even exiting is checked as well; Carrying goods in a truck or individuals on a motorcycle towards a particular cordoned area which depicts different means or ways on how materials are transported in and out of the cell thus the transport mechanisms. In cellular biology, membrane transport refers to the collection of mechanisms that regulate the passage of solutes such as ions and small molecules through biological membranes, which are lipid bilayers that contain proteins embedded in them. 54 Plasma membrane (Cell Membrane) plays a vital role in the transport mechanisms and separates the living cell from its surroundings. To perform these roles, it needs lipids, which make a semi-permeable barrier between the cell and its environment. It also needs proteins, which are involved in cross-membrane transport and cell communication, and carbohydrates (sugars and sugar chains), which decorate both the proteins and lipids and help cells recognize each other. Fig. 7.a Even in a mall or at the checkpoints, the people and objects move from one location to another; they cross or are contained within certain boundaries. Analogously, a cell membrane‘s functions involve movement within the cell and across the boundaries in the process of intracellular and intercellular activities. Just like the law enforcers or security guards, they allow some substances to pass through, but not others. . 6.1 Structural Components of the Cell Membrane What I Know Write the letter of the best answer in the blank. _____1. Which plasma membrane component can be either found on its surface or embedded in the membrane structure? a. protein b. cholesterol c. carbohydrate d. phospholipid _____2. What is the primary function of carbohydrates attached to the exterior of cell membranes? a. identification of the cell b. flexibility of the membrane c. strengthening the membrane d. channels through membrane 55 _____3. Which characteristic of a phospholipid contributes to the fluidity of the membrane? a. its head b. cholesterol c. a saturated fatty acid tail d. double bonds in the fatty acid tail _____4. Which interacts to hydrophilic and hydrophobic environments? a. protein b. cholesterol c. phospholipid d. carbohydrate _____5. Carbohydrates is found outside the surface of the cell and bounded with? a. lipid or protein b. phospholipid c. glycoprotein d. glycolipid Provide the description of each structural components of the cell membrane regarding its location and features inside the empty blanks. COMPONENT LOCATION FEATURE/FUNCTION Phospholipids Main fabric of the membrane the most abundant lipid in the plasma membrane 6.___________________ ___________________ Cholesterol 7.___________________ ___________________ Dampen effects of temperature Integral Proteins Embedded in the phospholipid bilayer; may or may not extend through both layers 8.___________________ ___________________ Peripheral Proteins On the inner or outer surface of the phospholipid bilayer, but not embedded in its hydrophobic core 9.___________________ ___________________ Carbohydrate Chains 10.___________________ ___________________ Cell recognition Effective interaction with the acqueous environment 56 What’s In • REVIEW: The Structural Components of the Cell Membrane The modern understanding of the cellular or plasma membrane is referred to as the fluid mosaic model or fluid mosaics of lipids and proteins. It is composed of a bilayer of phospholipids, with their hydrophobic, fatty acid tails in contact with each other (Fig. 7.d). The landscape of the membrane is studded with proteins, some of which span the membrane. Some of these proteins serve to transport materials into or out of the cell. Carbohydrates are attached to some of the proteins and lipids on the outward-facing surface of the membrane (Fig. 7.b.), forming complexes which function is to identify the cell to other cells. Cell membranes enclose and define the borders of cells, but rather than being a static bag, they are dynamic and constantly in flux. Fig. 7.b. Structural Component of Cellular Membrane Fig. 7.c. In 1935, Davson-Danielli, the sandwich model of membrane structure stated that the membrane was made up of a phospholipid bilayer sandwiched between two protein layers. 57 Fig. 7.d. In 1972, S. J. Singer and G. Nicolson proposed that the membrane is a mosaic of proteins dispersed within the bilayer, with only the hydrophilic regions exposed to water. The Fluidity of the membrane is due to temperature, the configuration of the unsaturated fatty acid tails (some kinked or form a sharp twist by double bonds), the presence of cholesterol embedded in the membrane, and the mosaic nature of the proteins and protein-carbohydrate combinations, which are not firmly fixed in place. Key Takes of the Fluid Nature of the CM: • Phospholipids in the plasma membrane can move within the bilayer (Fig. 7.e) • Most of the lipids, and some proteins, drift laterally • Rarely does a molecule flip-flop transversely across the membrane Fig. 7.e. Lateral movement occurs 107 times per second. Flip-flopping across the membrane is rare (~ once per month). 58 • As temperatures cool, membranes switch from a fluid state to a solid state. • The temperature at which a membrane solidifies depends on the types of lipids. • Membranes rich in unsaturated fatty acids are more fluid than those rich in saturated fatty acids. (Fig. 7.f.) • Membranes must be fluid to work properly; they are usually about as fluid as salad Oil. Fig. 7.f. The type of hydrocarbon tails in phospholipids – Affects the fluidity of the cell membrane Fluid Viscous Saturated hydrocarbon tails Unsaturated hydrocarbon tails (a) Unsaturated versus saturated hydrocarbon tails (b) Cholesterol within the animal cell membrane Cholesterol • The steroid cholesterol has different effects on membrane fluidity at different temperatures. • At warm temperatures (such as 37°C), cholesterol restrains movement of Phospholipids. • At cool temperatures, it maintains fluidity by preventing tight packing. 59 Structural Component of the Cell Membrane (Plasma Membrane) COMPONENT LOCATION FEATURE/FUNCTION Phospholipids Main fabric of the membrane the most abundant lipid in the plasma membrane are amphipathic molecules Cholesterol Tucked between the hydrophobic tails of the membrane phospholipids Dampen effects of temperature Integral Proteins Embedded in the phospholipid bilayer; may or may not extend through both layers Transport of substance through membrane Peripheral Proteins Carbohydrate Chains On the inner or outer surface of the phospholipid bilayer, but not embedded in its hydrophobic core Attached to proteins or lipids on the extracellular side of the membrane (forming glycoproteins and glycolipids Cell recognition Cell recognition Effective interaction with the acqueous environment Terminology: Amphiphilic or Amphipathic molecule possessing a polar or charged area and a nonpolar or uncharged area capable of interacting with both hydrophilic and hydrophobic environments Fluid mosaic model describes the structure of the plasma membrane as a mosaic of components including phospholipids, cholesterol, proteins, glycoproteins, and glycolipids (sugar chains attached to proteins or lipids, respectively), resulting in a fluid character (fluidity) Glycolipid combination of carbohydrates and lipids Glycoprotein combination of carbohydrates and proteins Hydrophilic molecule with the ability to bond with water; ―water-loving‖ Hydrophobic molecule that does not have the ability to bond with water; ―water-hating‖ 60 Integral protein protein integrated into the membrane structure that interacts extensively with the hydrocarbon chains of membrane lipids and often spans the membrane; these proteins can be removed only by the disruption of the membrane by detergents Peripheral protein protein found at the surface of a plasma membrane either on its exterior or interior side; these proteins can be removed (washed off of the membrane) by a high-salt wash What’s New • Visual and Listening Activity: 1. A video link is provided ; ―Fluid mosaic model of cell membranes‖ | Biology | by Khan Academy (2015), https://youtu.be/cP8iQu57dQo 2. Watch and Listen carefully to the video and be able to recognize and relate to each attributes of the structural components of the membrane. 3. Reflect on your life experiences and relate them to the lesson in the video so that you will be able to write a story analogous to the structural components of the cell membrane. 4. Write the story neatly on a long bond paper. What Is It • Q & A Activity: 1. What happens to the plasma membrane if the weather gets cold? 2. Are there structural components involved in the membrane that are affected from the rise and fall of the temperature? What are those structures? 3. What does Fig. 7.f imply regarding the fatty acid or hydrocarbon tail‘s shape when compared and contrasted in relation with transport mechanism? Explain your answer. (Write your answers on a ½ crosswise intermediate paper.) 61 What’s More • Drafting from Visual and Listening Activity: 1. A video link is provided ; ―Construction of the Cell Membrane‖ by Becky PolkPohlman Barbara Liang; https://www.wisc-online.com/learn/natural-science/lifescience/ap1101/construction-of-the-cell-membrane 2. Watch and Listen carefully for you to be able to make a rough draft sketch of the individual structural components of the membrane through the video clip. 3. Prepare your final draft sketch to me with labels of the indigenous /recyclable materials you will utilize for each of the structural components for the next activity. 5. Write your sketch neatly on a long bond paper. What I Have Learned • Learning Process Activity: Provide the best answer in the blank. 1. The modern understanding of the cellular or plasma membrane is referred to as the ______________ or ______________. 2. It is composed of a bilayer of ______________. 3. ______________ are attached to some of the proteins and lipids on the outwardfacing surface of the membrane. 4. ______________is a function of Carbohydrates. 5. The fluid nature of the membrane is due to ______________. 6. Cell membranes ______________ and ______________ the borders of cells. 7. ______________ refers to the collection of mechanisms that regulate the passage of solutes. 8. ______________ integrated into the membrane structure that interacts extensively with the hydrocarbon chains of membrane lipids. 62 What I Can Do • Performance Activity: Construct a cell membrane model from indigenous or recyclable materials. 1. Prepare your final draft sketch with labels of the indigenous /recyclable materials that you will utilize for each of the structural components for this activity. 2. Prepare your indigenous /recyclable materials and tools kits to start constructing the cell membrane model. 3. Set your output on a 2x2 sturdy and used illustration board or any platform. 4. Keep your output in a safe place and submit it on the exact date of submission to be announced by your teacher. 6.2 The Relationship of the Structure and Composition of the Cell Membrane to its Function What I Know Write the letter of the best answer in the blank. _____1. The primary function of the plasma membrane is …. a. to protect the cell from its surroundings. b. to provide shape and integrity to the cell. c. to maintains the cell potential. d. to be a fluid mosaic model. _____2. What is the primary function of carbohydrates attached to the exterior of cell membranes? a. identification of the cell b. flexibility of the membrane c. strengthening the membrane d. channels through membrane 63 _____3. Cellular Signaling relation to the Plasma Membrane is…. a. to protect intracellular components from the extracellular environment. b. to enclose and define the borders of the cell c. to transmit signals via complex proteins d. to transport materials into or out of the cell _____4. Cellular Transport Mechanism‘s relation to the Plasma Membrane is… a. to protect intracellular components from the extracellular environment. b. to transport materials into or out of the cell c. to enclose and define the borders of the cell d. to transmit signals via complex proteins _____5. Vital for cellular signalling processes that influence tissue and organ formation a. membrane markers b. membrane receptors c. glycoprotein d. glycolipid Provide the the Funtions related to the Structures and Compositions of the Cell Membrane inside the empty blanks. Structure or Component Function 6.________________________________________ Phospholipid Bilayer ________________________________________ .7.________________________________________ Membrane Markers ________________________________________ 8.________________________________________ Cytoskeleton ________________________________________ 9.________________________________________ Transmembrane Protein ________________________________________ 10.________________________________________ Membrane Receptors ________________________________________ 64 What’s In • REVIEW: The Structure and Composition of the Cell Membrane relation to its Function The plasma membrane protects the cell from its external environment, mediates cellular transport, and transmits cellular signals. The principal components of the plasma membrane are lipids (phospholipids and cholesterol), proteins, and carbohydrates. The plasma membrane protects intracellular components from the extracellular environment. The plasma membrane mediates cellular processes by regulating the materials that enter and exit the cell. The plasma membrane carries markers that allow cells to recognize one another and can transmit signals to other cells via receptors. The plasma membrane (also known as the cell membrane or cytoplasmic membrane) is a biological membrane that divides the interior of a cell from its outside environment. (Figure 7.g) The primary function of the plasma membrane is to protect the cell from its surroundings. Composed of a phospholipid bilayer with embedded proteins, the plasma membrane is selectively permeable to ions and organic molecules and regulates the movement of substances in and out of cells. Plasma membranes must be very flexible in order to allow certain cells, such as red blood cells and white blood cells, to change shape as they pass through narrow capillaries. The plasma membrane also plays a role in anchoring the cytoskeleton to provide shape and integrity to the cell, and in attaching to the extracellular matrix and other cells to help group cells together to form tissues. The membrane also maintains the cell potential. In short, if the cell is represented today as a COVID FREE-CAGAYAN DE ORO CITY, then the plasma membrane is the checkpoints with the frontliners and law enforcers that provides protective and territorial structure for the city inside, depicting separation or barrier, regulates which people leave and enter the city, and conveys messages to and from neighbouring cities. Just as an unguarded check point in the surrounding barrier can be a disaster for the city in today‘s crisis, like a rupture in the plasma membrane causes the cell to lyse and die. 65 Cellular Signaling/ Recognition’s relation to the Plasma Membrane Among the most sophisticated functions of the plasma membrane is its ability to transmit signals via complex proteins. These proteins can be receptors, which work as receivers of extracellular inputs and as activators of intracellular processes, or markers, which allow cells to recognize each other. Membrane receptors provide extracellular attachment sites for effectors like hormones and growth factors, which then trigger intracellular responses. Some viruses, such as Human Immunodeficiency Virus (HIV), can hijack these receptors to gain entry into the cells, causing infections. Membrane markers allow cells to recognize one another, which is vital for cellular signaling processes that influence tissue and organ formation during early development. This marking function also plays a later role in the ―self‖-versus-―nonself‖ distinction of the immune response. Marker proteins on human red blood cells, for example, determine blood type (A, B, AB, or O). Terminology: Receptor A protein on a cell wall that binds with specific molecules so that they can be absorbed into the cell. Cellular Transport Mechanisms’ relation to the Plasma Membrane The movement of a substance across the selectively permeable plasma membrane can be either ―passive‖—i.e., occurring without the input of cellular energy —or ―active‖—i.e., its transport requires the cell to expend energy. The cell employs a number of transport mechanisms that involve biological membranes: 1. Passive osmosis and diffusion: transports gases (such as O 2 and CO2) and other small molecules and ions 2. Transmembrane protein channels and transporters: transports small organic molecules such as sugars or amino acids 3. Endocytosis: transports large molecules (or even whole cells) by engulfing them 4. Exocytosis: removes or secretes substances such as hormones or enzymes. 66 Fig. 7.g. Detailed Image of Cell Membrane Structure in a Cell 67 What’s New • Activity: Identify the structural components of the cell membrane and provide the boxes with the best answers 1. 2. 8. 3. 4. 6. 7. 5. What Is It • Q & A Activity: 1. Can you remember all the structural components of a cell membrane and be able to list them down? If so, just list down at least 10 along with its functions. 2. Are there structures or components related in the membrane‘s transport mechanisms? What are those? Write at least 5 and indicate why they are related. (Write your answers on a ½ crosswise intermediate paper.) 68 What’s More • Visual and Listening Activity: 1. A video link is provided ; ―Inside the Cell Membrane‖ by Amoeba Sisters (Feb 28, 2018), https://www.youtube.com/watch?v=qBCVVszQQNs 2. Watch and Listen carefully for you to be able to associate the components and structures of the cell membrane to your household. 3. Make an analogous reflection paper of your household to the structures and components of the cell membrane. Prioritize on the function aspect. 4. Write it on a long bond paper. What I Have Learned • Learning Process Activity: 1. Provide insights on how the structures and components of the cell membrane is related to its function with regards to the Celular Signalling/Recognition. 2. Give your Take Aways on Cellular Transport Mechanisms‘ relation to the Plasma Membrane emphasizing more on its function. 3. Write it on a long bond paper. What I Can Do • Performance Activity: 1. Craft a task plan on a long bond paper regarding the tasks on what functions you can contribute to your household during this time of crisis. Include also listing down the house members functions contributing in your home. 2. Document this task in a week. Photos included in a separate paper or soft copy. 69 Template (example) SUN 01/21/20 MON _/_/20 TUE _/_/20 WED _/_/20 THU _/_/20 FRI _/_/20 SAT _/_/20 PARENT/GUARDIAN Printed name, Signature and Date Portgas D. Ace AM PM -sanitized the bathroom -washed the dishes -swept outside the home grounds -father Portgas vertical planted pechay. -ate Sakura mopped the floor with disinfectanct -mother Tsaunade sterilized the utensils -threw garbage -kuya Senku bathed Penduko our dog Sun 1/8/20 Portgas D. Ace Sun 1/8/20 3. Keep your output in a safe place and send it on the exact date of submission to be announced by your teacher. 6.3 Transport Mechanisms in Cells 6.4 Endocytosis vs. Exocytosis What I Know Write the letter of the best answer in the blank. _____1. Which is not a part of the transport mechanisms in cells? a. facilitated b. active c. osmosis d. excytosis _____2. What is the most direct form of transport mechanisms in cells? a. passive b. active c. osmosis d. excytosis 70 _____3. Hydrocarbons dissolve in the lipid bilayer, except for… a. pass the membrane b. hydrophobic c. non polar d. polar _____4. Water molecules move from a region of high concentration to a region of low concentration. a. facilitated b. active c. osmosis d. diffusion _____5. Moves molecules from high to low regions of concentration with the transmembrane protein a. facilitated b. active c. osmosis d. diffusion Provide the right answers after the number in the boxes below for the difference between Endocytosis and Exocytosis. Definition Process Type Vesicle Endocytosis refers to the transportation of macromolecules, large particles, and polar substances into the cell from the external environment. Exocytosis refers to…. 6. Involved with …. 7. Involved in removing waste from the cell Occurs by …. 8. Occurs by constitutive and regulated secretory pathway Internal vesicles like phagosomes are formed Forms…. 9. 10. Involved 11. Releasing of hormones out of the cell is an example Cell Wall Formation Example 71 What’s In • REVIEW: Transport Mechanisms in Cells (Diffusion, Osmosis, Facilitated Transport, Active Transport) to its Function Plasma membranes must allow certain substances to enter and leave a cell, and prevent some harmful materials from entering and some essential materials from leaving. In other words, plasma membranes are selectively permeable—they allow some substances to pass through, but not others. If they were to lose this selectivity, the cell would no longer be able to sustain itself, and it would be destroyed. Some cells require larger amounts of specific substances. They must have a way of obtaining these materials from extracellular fluids. This may happen passively, as certain materials move back and forth, or the cell may have special mechanisms that facilitate transport. Some materials are so important to a cell that it spends some of its energy, hydrolyzing adenosine triphosphate (ATP), to obtain these materials. Red blood cells use some of their energy doing just that. Most cells spend the majority of their energy to maintain an imbalance of sodium and potassium ions between the cell's interior and exterior, as well as on protein synthesis. The most direct forms of membrane transport are passive. Passive transport is a naturally occurring phenomenon and does not require the cell to exert any of its energy to accomplish the movement. In passive transport, substances move from an area of higher concentration to an area of lower concentration. A physical space in which there is a single substance concentration range has a concentration gradient. Selective Permeability Plasma membranes lack symmetry: the membrane's exterior is not identical to its interior (Fig. 7.h). There is a significant difference between the arrangement of proteins and phospholipids and between the two leaflets that form a membrane. On the membrane's interior, some proteins serve to anchor the membrane to cytoskeleton's fibers. There are peripheral proteins on the membrane's exterior that bind extracellular matrix elements. Carbohydrates, attached to lipids or proteins, are also on the plasma membrane's exterior surface (Figure 7.b). These carbohydrate complexes help the cell bind required substances in the extracellular fluid. This adds considerably to plasma membrane's selective nature. 72 Fig. 7.h. molecular view of the cell membrane. Intrinsic proteins penetrate and bind tightly to the lipid bilayer, which is made up largely of phospholipids and cholesterol and which typically is between −9 4 and 10 nanometers (nm; 1 nm = 10 metre) in thickness. Extrinsic proteins are loosely bound to the hydrophilic (polar) surfaces, which face the watery medium both inside and outside the cell. Some intrinsic proteins present sugar side chains on the cell's outer surface. 2007 Encyclopædia Britannica, Inc. Fig. 7.i. Structural Component of Cellular Membrane The plasma membrane's exterior surface is not identical to its interior surface. Recall that plasma membranes are amphiphilic: They have hydrophilic and hydrophobic regions. This characteristic helps move some materials through the membrane and hinders the movement of others. Non-polar and lipid-soluble material with a low molecular weight can easily slip through the membrane's hydrophobic lipid core. Substances such as the fat-soluble vitamins A, D, E, and K readily pass 73 through the plasma membranes in the digestive tract and other tissues. Fat-soluble drugs and hormones also gain easy entry into cells and readily transport themselves into the body‘s tissues and organs. Oxygen and carbon dioxide molecules have no charge and pass through membranes by simple diffusion. Polar substances present problems for the membrane. While some polar molecules connect easily with the cell's outside, they cannot readily pass through the plasma membrane's lipid core. Additionally, while small ions could easily slip through the spaces in the membrane's mosaic, their charge prevents them from doing so. Ions such as sodium, potassium, calcium, and chloride must have special means of penetrating plasma membranes. Simple sugars and amino acids also need the help of various transmembrane proteins (channels) to transport themselves across plasma membranes. Key Takes of the Permeability of the Lipid Bilayer: • Hydrophobic (nonpolar) molecules, such as hydrocarbons, can dissolve in the lipid bilayer and pass through the membrane rapidly. • Hydrophilic (Polar) molecules, such as sugars, do not cross the membrane easily. Fig. 7.i. Substances highly impermeable to cross membrane like large uncharged polar molecules (glucose and fructose), charged molecules and finally ALL IONS. But, Transport proteins are used to transport ions across membrane. 74 The Transport Mechanisms 1. DIFFUSION Passive movement of molecules from a region of high concentration to a region of low concentration. (Concentration gradient is the difference in concentration between the two regions) Small, uncharged molecules like O2, CO2 and H2O can move easily through the membrane. Works well over short distances. Once molecules enter the cell, the rate of diffusion slows. Limits cell size. Fig. 7.j. Diffusion through a permeable membrane moves a substance from a high concentration area (extracellular fluid, in this case) down its concentration gradient (into the cytoplasm). 2. OSMOSIS Diffusion of the solvent across a semi-permeable membrane separating two solutions. (Diffusion of water) Water molecules move from a region of high concentration to a region of low concentration. Direction depends on the relative concentration of water molecules on either side of the cell membrane. Isotonic: Water inside the cell equals the water outside the cell and equal amounts of water move in and out of the cell. Hypotonic: Water outside the cell is greater than that inside the cell, water moves into the cell, may cause cell to burst (lysis) Hypertonic: Water inside the cell is greater than outside. Water moves out of the cell, may cause the cell to shrink (plasmolysis) 75 Fig. 7.k. Movement of water molecules from high concentration to low concentration, through a semipermeable membrane. 3. FACILITATED TRANSPORT (ALSO KNOWN AS FACILITATED DIFFUSION OR PASSIVE-MEDIATED TRANSPORT) Assists with the movement of large molecules like glucose. Passive movement of a substance into or out of the cell by means of carrier proteins or channel proteins. Moves molecules from high to low regions of concentration. Carrier proteins: Transports noncharged molecules with a specific shape. Channel proteins: Tunnel shape that transports small charged molecules. DOES NOT REQUIRE water molecules for other molecules to transfer. Fig. 7.l. Facilitated diffusion in cell membrane, showing ion channels and carrier proteins. 76 4. ACTIVE TRANSPORT The process of moving substances against their concentration gradients Requires Energy. Examples: Kidney cells pump glucose and amino acids out of the urine and back into the blood. Intestinal cells pump in nutrients from the gut. Root cells pump in nutrients from the soil. Gill cells in fish pump out sodium ions. Fig. 7.m. Active transport: Requires the use of chemical energy to move substances across a membrane, against a concentration gradient. Active transport proteins may be uniports, symports, or antiports. Active Transport Pump: Sodium-potassium pump 3 sodium ions inside the cell and 2 potassium ions outside the cell bind to the pump. This allows the release of energy from ATP and causes the protein complex to change shape. The change in shape allow the Na+ and K+ ions to move across and be released. 77 Fig. 7.n. In Primary active transport, energy from the hydrolysis of ATP is used to move ions into or out of cells against their concentration gradients. The sodium-potassium pump is an important example. Fig. 7.o. Secondary active transport couples the passive movement of one substance with its concentration gradient to the movement of another substance against its concentration gradient. Energy from ATP is used indirectly to establish the concentration gradient that results in the movement of the first substance. 78 5. BULK TRANSPORT 1. Endocytosis: The cell membrane folds inward, traps and encloses a small amount of matter from the extracellular fluid. 2. Exocytosis: The reverse of endocytosis: A vesicle from inside the cell moves to the cell membrane. The vesicle fuses to the membrane and the contents are secreted. Fig. 7.p. Exocytosis and Endocytosis Difference between Endocytosis and Exocytosis Definition Endocytosis refers to the transportation of macromolecules, large particles, and polar substances into the cell from the external environment Process Involved with up taking nutrients into the cell Involved in removing waste from the cell Type Occurs by both phagocytosis and pinocytosis Occurs by constitutive and regulated secretory pathway 79 Exocytosis refers to the transportation of molecules or particles from the cell to the outside of the cell Vesicle Internal vesicles like phagosomes are formed Secretory vesicles are formed Cell Wall Formation Not involved Involved Example Engulfing bacteria by phagocytes is an example Releasing of hormones out of the cell is an example 3 Types of Endocytosis: Pinocytosis: The intake of a small droplet of extracellular fluid. This occurs in nearly all cell types. Phagocytosis: The intake of a large droplet of extracellular fluid. This occurs in specialized cells. Receptor-assisted endocytosis: The intake of specific molecules that attach to special proteins in the cell membrane. These proteins are uniquely shaped to fit the shape of a specific molecule. Fig. 7.q. Secondary active transport couples the passive movement of one substance with its concentration gradient to the movement of another substance against its concentration gradient. Energy from ATP is used indirectly to establish the concentration gradient that results in the movement of the first substance. 80 What’s New • Visual and Listening Activity: 1. A video link is provided ; ―Cell Transport‖ by Amoeba Sisters (2016), https://www.youtube.com/watch?v=Ptmlvtei8hw 2. Watch and Listen carefully for you to be able to determine and differentiate the types of transport mechanism in a cell. 3. Make a reaction paper of the video clip. 4. Write it on a long bond paper. What Is It • Q & A Activity: 1. Why is the transport mechanism vital in a cell? 2. How are things transported through the membrane? 3. How will a person know if the transport mechanism in the cell throughout our body is starting not to work not working? 4. What will you compare to the transport mechanism to what we have today? 5. If you are to choose what transport mechanism you prefer, what will it be and why? What’s More • Crafting Activity: 1. Choose one (1) Transport Mechanism in a cell and make a relatable analogy based on your experience recently. 2. Illustrate and explain your work on a long bond paper . 81 3. Write your sketch neatly on a long bond paper. 4. Keep your output in a safe place and submit it on the exact date of submission to be announced by your teacher. What I Have Learned • Q & A Activity: 1. Provide the different Transport Mechanisms in a cell with at least 2-3 attributes. 2. How are things transported through the membrane? 3. How will a person know if the transport mechanism in the cell throughout our body is starting not to work not working? 4. What will you compare to the transport mechanism to what we have today? 5. If you are to choose what transport mechanism you prefer, what will it be and why? What I Can Do • Performance Activity: 1. Choose what you think will be the Transport Mechanism you need to create a story that reflects what our country is experiencing now. 2. Write your draft on a piece of paper and after you‘re done, transfer it in a long bond paper . 3. Keep your output in a safe place and submit it on the exact date of submission to be announced by your teacher. 82 Assesment Write the letter of the best answer in the blank. _____1. What is the primary function of carbohydrates attached to the exterior of cell membranes? a. identification of the cell b. flexibility of the membrane c. strengthening the membrane d. channels through membrane _____2. Which plasma membrane component can be either found on its surface or embedded in the membrane structure? a. protein b. cholesterol c. carbohydrate d. phospholipid _____3. Carbohydrates is found outside the surface of the cell and bounded with? a. lipid or protein b. phospholipid c. glycoprotein d. glycolipid _____4. Which interacts to hydrophilic and hydrophobic environments? a. protein b. cholesterol c. phospholipid d. carbohydrate _____5. Which characteristic of a phospholipid contributes to the fluidity of the membrane? a. its head b. cholesterol c. a saturated fatty acid tail d. double bonds in the fatty acid tail _____6. What is the primary function of carbohydrates attached to the exterior of cell membranes? a. identification of the cell b. flexibility of the membrane c. strengthening the membrane d. channels through membrane 83 _____7. The primary function of the plasma membrane is …. a. to protect the cell from its surroundings. b. to provide shape and integrity to the cell. c. to maintains the cell potential. d. to be a fluid mosaic model. _____8. Vital for cellular signalling processes that influence tissue and organ formation a. membrane markers b. membrane receptors c. glycoprotein d. glycolipid _____9. Cellular Transport Mechanism‘s relation to the Plasma Membrane is… a. to protect intracellular components from the extracellular environment. b. to transport materials into or out of the cell c. to enclose and define the borders of the cell d. to transmit signals via complex proteins _____10. Cellular Signaling relation to the Plasma Membrane is…. a. to protect intracellular components from the extracellular environment. b. to enclose and define the borders of the cell c. to transmit signals via complex proteins d. to transport materials into or out of the cell _____11. Hydrocarbons dissolve in the lipid bilayer, except for… a. pass the membrane b. hydrophobic c. non polar d. polar _____12. Which is not a part of the transport mechanisms in cells? a. facilitated b. active c. osmosis d. excytosis _____13. What is the most direct form of transport mechanisms in cells? a. passive b. active c. osmosis d. excytosis _____14. Water molecules move from a region of high concentration to a region of low concentration. a. facilitated b. active c. osmosis d. diffusion 84 _____15. Moves molecules from high to low regions of concentration with the transmembrane protein a. facilitated b. active c. osmosis d. diffusion _____16. All are attributes of exocytosis except for… a. Involved with up taking nutrients into the cell b. Secretory vesicles are formed c. Involved in removing waste from the cell d. Uninvolved in cell Wall Formation _____17. Water inside the cell equals the water outside the cell and equal amounts of water move in and out of the cell. a. Osmotic b. Hypertonic c. Hypotonic d. Isotonic _____18. Mechanism using ATP a. facilitated b. active c. osmosis d. excytosis _____19. Engulfment involves… a. passive b. active c. endocytosis d. excytosis _____20. Waste removal involves…. a. passive b. active c. endocytosis d. excytosis 85 Lesson Structures and Functions of Biological Molecules - Enzymes 7 What I Need to Know Learning Competencies: 1. Describe the components of an enzyme (STEM_BIO11/12-Ii-j-17) 2. Explain oxidation/reduction reactions (STEM_BIO11/12-Ii-j-18) 3. Determine how factors such as pH, temperature, and substrate affect enzyme activity (STEM_BIO11/12-Ii-j-19) Performance Standards: The learners should be able to construct a cell membrane model from indigenous or recyclable materials. Introduction: When you were very young and played under the heat of the sun, were you able to experience sweat dripping in your neck, head and then like some acid that went in your eyes, it feels burning and stingy right? But don‘t you worry. Now, we all know that the burning and stingy sensation in our eyes was due to dust and oils that came in contact with the sweat and to an anti-microbial enzyme fighting off germs called Lysozyme. So enzymes are vital for life and serve a wide range of important functions in the body, such as aiding in fighting germs, digestion, and metabolism. 86 Some enzymes help break large molecules into smaller pieces that are more easily absorbed by the body. Other enzymes help bind two molecules together to produce a new molecule. Enzymes are highly selective catalysts, meaning that each enzyme only speeds up a specific reaction. Peeling, bruising, or cutting fruits cause them to release enzymes like polyphenol oxidase (PPO, phenolase) that, with the presence of oxygen (oxidation) in the surrounding air, goes into chemical reactions of plant compounds. These chemical reactions produce brown pigments through the process of enzymatic browning (Fig. 8.a.) Oxidation and reduction occur in tandem and it occurred when peeling or cutting fruits resulting to an enzymatic browning. Because oxidation and reduction usually occur together, these pairs of reactions are called oxidation reduction reactions, or redox reactions. Think of people passing balls back and forth, and the balls are balls of negativity. So if I'm holding the ball, I'm reduced. If I pass you the ball, you get reduced, and I become oxidized. The passing of the ball was the reduction-oxidation reaction. An oxidation-reduction (redox) reaction is a type of chemical reaction that involves a transfer of electrons between two species. An oxidationreduction reaction is any chemical reaction in which the oxidation number of a molecule, atom, or ion changes by gaining or losing an electron. A classic example of a redox reaction is rusting. When rusting happens, oxygen steals electrons from iron. Oxygen gets reduced while iron gets oxidized. Fig. 8.a. Enzymatic browning of a sliced apple. 87 7.1 Transport Mechanisms in Enzymes What I Know Write the letter of the best answer in the blank. _____1. Where the reaction is catalysed in an enzyme? a. Facilitated site b. Active site c. Passive site d. Direct site _____2. Catalyze group transfer reactions; often require coenzymes. a. Transferases b. Hydrolases c. Lyases d. Isomerases _____3. Lysis of substrate; produce contains double bond. a. Transferases b. Hydrolases c. Lyases d. Isomerases _____4. Enzymes are described as all of the above except a. micromolecule b. macromolecule c. stereospecific d. having a defined amino acid sequence _____5. Active forms from one of the inactive enzyme . a. Apoenzyme b. Holoenzyme c. Cofactor d. Coenzyme _____6. Enzymes described having a typically long amino acid sequence about? a. 100-400 b. 100-500 c. 100-600 d. 100-700 PRIOR KNOWLEDGE: Definition of Terms 7. Catalyst 8. Active Side 9. Enzyme 10. Substrate 88 What’s In • REVIEW: Description of the Components of Enzyme What is an enzyme? Enzymes are protein macromolecules. o They have a defined amino acid sequence, and are typically 100-500 amino acids long. o They have a defined three-dimensional structure. Enzymes are catalysts. o They act as a catalyst to a chemical or biochemical reaction, with a defined mechanism. 6 14 o They increase the speed of that reaction, typically by 10 -10 times faster than the rate of the uncatalysed reaction. o They are selective for a single substrate. o They speed up rate of reaction by lowering the activation energy (Ea). o They are stereospecific, meaning the reaction produces a single product. Common mistakes and misconceptions Enzymes are "specific." Each type of enzyme typically only reacts with one (Fig 8.b.), or a couple, of substrates. Some enzymes are more specific than others and will only accept one particular substrate. Other enzymes can act on a range of molecules, as long as they contain the type of bond or chemical group that the enzyme targets. Fig. 8.b. A substrate entering the active site of the enzyme. Image modified from "Enzymes: Figure 2," by OpenStax College, Biology, CC BY 3.0. . 89 Enzymes are reusable. Enzymes are not reactants and are not used up during the reaction. Once an enzyme binds to a substrate and catalyzes the reaction, the enzyme is released, unchanged, and can be used for another reaction. This means that for each reaction, there does not need to be a 1:1 ratio between enzyme and substrate molecules. Nomenclature Typically add “-ase” to name of substrate e.g. lactase breaks down lactose (dissacharide of glucose and galactose) Enzymes based upon the class of organic chemical reaction catalyzed: 1. Oxidoreductase - catalyze redox reactions; dehydrogenases, oxidases, peroxidases, reductases. 2. Transferases - catalyze group transfer reactions; often require coenzymes. 3. Hydrolases - catalyze hydrolysis reactions. 4. Lyases - lysis of substrate; produce contains double bond. 5. Isomerases - catalyze structural changes; isomerization. 6. Ligases - ligation or joining of two substrates with input of energy, usually from ATP hydrolysis; often called synthetases or synthases. ENZYME COMPONENTS (Fig. 8.c.) • Apoenzyme: • is an inactive enzyme, activation of the enzyme occurs upon binding of an organic or inorganic cofactor. • are enzymes that lack their necessary cofactor(s) for proper functioning • a Protein • • • • • • • • • Holoenzyme: (Fig. 8.d.) are the active forms of apoenzymes. (Apoenzyme plus cofactor) DNA polymerase and RNA polymerase are examples. Cofactor: mostly metal ions or small organic molecules, are inorganic and organic chemicals that assist enzymes during the catalysis of reactions. Nonprotein component (e.g. magnesium, zinc) Coenzyme: are non-protein organic molecules that are mostly derivatives of vitamins soluble in water by phosphorylation Organic cofactor (Eg: NADH, FADH) Many enzymes can catalyze a reaction only if coenzymes, or cofactors are present. 90 Fig. 8.c. Parts of an Enzyme Fig. 8.d. Component of a Holoenzyme Terminology: Catalyst A substance that speeds up a chemical reaction without being changed A biological catalyst (usually a protein) Enzyme Substrate The reactant molecule that an enzyme works on Active Site The part of the enzyme where the substrate binds Enzyme-substrate complex formed when the substrate molecule collides with the active site of its enzyme Endoenzymes(intracellular) / Exoenzymes (extracellular) 91 Activation energy the minimum energy required to start a chemical reaction Transition state the intermediate stage in a reaction in which the old bonds break and new bonds are formed What’s New • Visual and Listening Activity: 1. A video link is provided ; ―Cofactors | Coenzymes | Holoenzyme | Apoenzyme, QuickBiochemistry Basics (2020), https://www.youtube.com/watch?v=LK5HzcAOmyA 2. Watch and Listen carefully to the video and be able to recognize the components of enzyme. 3. Make a descriptive reaction paper emphasizing the components of the enzyme. 4. Write it neatly on a long bond paper. What Is It • Q & A Activity: 1. What are the components of the enzyme that makes it important or vital? 2. How does the component or part of the enzyme contribute to its function? 3. What are each of the components attributes? Describe them. (Write your answers on a ½ crosswise intermediate paper.) 92 What’s More • Visual and Listening Activity: 1. Watch the video clip ―How Enzymes Work‖, RicochetScience (2015), https://www.youtube.com/watch?v=UVeoXYJlBtI . 2. The video is explaining the mechanism of an enzymatic activity. But with the image below, relate what you have learned and try to explain what is happening from #1 - #5. 3. Draw and label with your best answer on a long coupon bond. What I Have Learned • Learning Process Activity: Write T if the statement is true and F if the statement is false. ______1. Substrate binds in the active site. ______2. An enzyme is usually lipid biological catalyst. ______3. The reactant molecule that an enzyme works on is the Substrate. ______4. A Catalyst retards the chemical reaction without being changed ______5. Coenzymes are non-protein organic molecules that are mostly derivatives of vitamins ______6. Cofactors are small protein organic molecules that assist enzymes during the catalysis of reactions. ______7. DNA and RNA polymerases are examples of Holoenzyme. 93 ______8. Apoenzyme activation occurs upon binding of an organic or inorganic coenzyme. ______9. Enzymes are reactants and are used up during the reaction. ______10. Once an enzyme binds to a substrate and catalyzes the reaction, the enzyme is released, unchanged, and can be used for another reaction. ______11. Some enzymes are more specific than others and will only accept one particular substrate ______12. Enzymes have a defined two-dimensional structure. ______13. Enzyme‘s amino acid sequence are typically 10-500 amino acids long. ______14. Transition state is the intermediate stage in the enzymatic mechanism. ______15. Substrate molecule collides with the active site of its enzyme forms the Enzyme Substrate complex. What I Can Do • Performance Activity: 1. Life is hard nowadays; you‘re supposed to be able to know how to cook since you‘re already a Senior High student. You can ask your guardian or parents to help you with your dish. Choose a recipe that you can easily cook. Only do this at home if you‘re permitted to do so. 2. Prepare your ingredients and materials for the activity and document everything using the camera of your phone or just list them down. 3. Write and determine your ingredients that will represent most likely the component of an enzyme. Describe the process of your activity like what would be the catalyst in your ingredients that sped up the reaction to make the finished product or what your salt would be represent in the components. 4. After you‘re done baking or cooking with the assistance of your parent or guardian (photos required if possible), reflect on all of the resources that you‘re able to utilize and appreciate them by serving your dish (output) first to your family and consume them together taken with a groufie pic. 5. Document everything from preparing to cooking and serving on a long bond and secure it until the date of submission that will be announced by the teacher. 94 7.2 Oxidation/Reduction Reactions What I Know PRIOR KNOWLEDGE: Definition of Terms 1. Oxidation 2. Reduction 3. Oxidants 4. Reductants 5. Reagent What’s In REVIEW: Oxidation-Reduction Reactions An oxidation-reduction (redox) reaction is a type of chemical reaction that involves a transfer of electrons between two species. An oxidation-reduction reaction is any chemical reaction in which the oxidation number of a molecule, atom, or ion changes by gaining or losing an electron. Redox reactions are common and vital to some of the basic functions of life, including photosynthesis, respiration, combustion, and corrosion or rusting. • oxidation-reduction reactions are also called REDOX reactions • all redox reactions involve the transfer of electrons from one atom to another • spontaneous redox reactions are generally exothermic, and we can use their released energy as a source of energy for other applications. Redox reactions are comprised of two parts, a reduced half and an oxidized half, that always occur together. The reduced half gains electrons and the oxidation number decreases, while the oxidized half loses electrons and the oxidation number increases. Simple ways to remember this include the mnemonic devices OIL RIG, meaning "oxidation is loss" and "reduction is gain," and LEO says GER, meaning "loss of e- = oxidation" and "gain of e- = reduced." There is no net change in the number of electrons in a redox reaction. Those given off in the oxidation half reaction are taken up by another species in the reduction half reaction. A good example of a redox reaction is the thermite reaction, in which iron atoms in ferric oxide lose (or give up) O atoms to Al atoms, producing Al 2O3. Fe2O3(s)+2Al(s)→Al2O3(s)+2Fe(l) 95 What do you mean by oxidation and reduction? • OXIDATION can be defined as addition of oxygen/electronegative element to a substance or removal of hydrogen/ electropositive element from a substance. • REDUCTION can be defined as removal of oxygen/electronegative element from a substance or addition of hydrogen/ electropositive element to a substance. *oxidation occurs when an atom’s oxidation state increases during a reaction *reduction occurs when an atom’s oxidation state decreases during a reaction Development of oxidation and reduction reaction concept______________________ Reaction of reduction oxidation based on releasing (losing) and gaining of oxygen (capturing). a. Oxidation reaction is a reaction of gaining (capturing) of oxygen by a substance Ex. CH4(g) + 2O2(g) CO2(g) + 2H2O(g) P4(s) + 5O2(g) 2P2O5(s) b. Reduction reaction is a reaction of releasing (losing) of oxygen from an oxide compound Ex. CuO(s) + H2(g) Cu(s) + H2O(g) Fe2O3(s) + 3CO(g) 2Fe(s) + 3CO2(g) What is an oxidizing and reducing agent? • Oxidizing agent: a reagent which increases the oxidation number of an element of a given substance. These reagents are called oxidants. It contains the element that is reduced. • Reducing agent: a reagent that lowers the oxidation number of a given element. These reagents are also called reductants. It contains the element that is oxidized. 2 Na(s) + Cl2(g) 2 Na+Cl–(s) Na is oxidized, Cl is reduced Na is the reducing agent, Cl2 is the oxidizing agent 96 Terminology: Reactant is a substance or compound added to a system to cause a chemical reaction, or added to test if a reaction occurs. The terms reactant and reagent are often used interchangeably—however, a reactant…. Reagent is more specifically a substance consumed in the course of a chemical reaction. What’s New • Visual and Listening Activity: 1. A video link is provided ; ―Introduction to Oxidation Reduction (Redox) Reactions‖, Tyler DeWitt (2015), https://www.youtube.com/watch?v=5rtJdjas-mY 2. Watch and Listen carefully to the video and be able to understand REDOX reaction. 3. Make a detailed reaction paper explaining the REDOX reaction. Provide 3 examples. 4. Write it neatly on a long bond paper. What Is It • Q & A Activity: 1. What are the components that make up REDOX reaction? 2. Who gains and losses electrons? 3. When does REDOX reaction happens? 4. Why is REDOX significant to learn? (Write your answers on a ½ crosswise intermediate paper.) 97 What I Have Learned • Learning Process Activity: Write the letter of the best answer in the blank. _____1. A substance consumed in the course of a chemical reaction. a. Reactant b. Reagent c. Reductant d. Oxidant _____2. Substance added to test if a reaction occurs. a. Reactant b. Reagent c. Reductant d. Oxidant _____3. Contains the element that is oxidized.. a. Reactant b. Reagent c. Reductant d. Oxidant _____4. Contains the element that is reduced. a. Reactant b. Reagent c. Reductant d. Oxidant _____5. Occurs when an atom‘s oxidation state decreases during a reaction. a. Oxidation b. Reduction c. Reduction-Oxidation Reaction d. All are correct. _____6. Occurs when an atom‘s oxidation state increases during a reaction. a. Oxidation b. Reduction c. Reduction-Oxidation Reaction d. All are correct. _____7. Oxidizing agent lowers the oxidation number of a given element. a. True b. False 98 _____8. True to oxidation-reduction (redox) reaction. Except… a. OXIDATION can be removal of hydrogen/ electropositive element from a substance. b. REDUCTION can be removal of oxygen/electronegative element from a substance. c. Spontaneous redox reactions are generally endothermic. d. All redox reactions involve the transfer of electrons from one atom to another. 7.3 Determining the Factors Affecting Enzyme Activity What I Know Place the letters of the best answer inside the box of the factor icon which influences the activity of the enzyme. 1. A. Changing this factor outside the enzyme‘s optimum range will slow enzyme activity. B. Decreasing this factor slows down a reaction 2. C. This factor at an optimum pH, near neutral causes enzymes to catalyze a reaction most rapidly. D. Increasing this factor will speed up the reaction, as long as there is substrate available to bind to. 3. E. At the saturation point, the reaction will not speed up, no matter how much of this factor is added. 4. F. Increasing this factor can cause an enzyme to lose its shape (denature) and stop working. G. Increasing this factor, the greater should be the initial reaction rate and will last as long as substrate present. H. This factor‘s graph of the reaction rate will plateau. 99 What’s In REVIEW: Factors Affecting Enzyme Activity Enzyme activity can be affected by a variety of factors, such as temperature, pH, concentrations and inhibitors. Enzymes work best within specific temperature and pH ranges, and sub-optimal conditions can cause an enzyme to lose its ability to bind to a substrate. Determnants of the Factors Affecting Enzyme Activites A. Temperature: Raising temperature generally speeds up a reaction, and lowering temperature slows down a reaction. However, extreme high temperatures can cause an enzyme to lose its shape (denature) and stop working. Most enzymes have an optimum temperature, near normal body temperature at which they catalyze a reaction most rapidly. B. pH (abbr. power of hydrogen or potential for hydrogen ): Each enzyme has an optimum pH range. Changing the pH outside of this range will slow enzyme activity. Extreme pH values can cause enzymes to denature. Even small pH changes can alter the electrical charges on various chemical groups in enzyme molecules, thereby altering the enzyme‘s ability to bind its substrate and catalyze a reaction. 100 Enzymes catalyze a reaction most rapidly at an optimum pH, near neutral. C. Substrateoconcentration: Increasing substrate concentration also increases the rate of reaction to a certain point. Once all of the enzymes have bound, any substrate increase will have no effect on the rate of reaction, as the available enzymes will be saturated and working at their maximum rate. At the saturation point, the reaction will not speed up, no matter how much additional substrate is added. The graph of the reaction rate will plateau. D. Enzyme concentration: Increasing enzyme concentration will speed up the reaction, as long as there is substrate available to bind to. Once all of the substrate is bound, the reaction will no longer speed up, since there will be nothing for additional enzymes to bind to. 101 The higher the concentration of an enzyme the greater should be the initial reaction rate. This will last as long as substrate present E. Enzyme Inhibitors (Inhibition): o Competitive inhibitor: A molecule similar in structure to a substrate can bind to an enzyme‘s active site and compete with substrate 102 o Noncompetitive inhibitors: attach to the enzyme at an allosteric site, which is a site other than the active site distort the tertiary protein structure and alter the shape of the active site. 103 o Feedback inhibition: regulates the rate of many metabolic pathways when an end product of a pathway accumulates and binds to and inactivates the first enzyme in the metabolic pathway. Product (usually ultimate product) of a pathway controls the rate of synthesis through inhibition of an early step (usually the first step). Conserves material and energy by preventing accumulation of intermediates. 104 What’s New • Visual and Listening Activity: 1. 2 video links are provided ; “ GCSE Biology - How Enzymes Work #11‖ and ―GCSE Biology - Factors that Affect Enzymes #12‖ by Cognito (2018), Part 1: https://www.youtube.com/watch?v=VNX9UQ08fZ4 Part 2: https://www.youtube.com/watch?v=qq1foXnvJao 2. Watch and Listen carefully to the video and be able to recognize and relate to each factors affecting the enzymatic activities. 3. Make a detailed reaction paper regarding the video clip yousaw. 4. Write your reaction on a long bond paper. What Is It • Q & A Activity: 1. What are factors involved in the enzymatic activity? 2. How can you determine the effects of each factor of the enzymatic activity? 3. Select 1 factor that most likely reflects your life as a Senior High student. (Write your answers on a 1 whole intermediate paper.) What I Have Learned • Learning Process Activity: Provide the best answer in the blank. 1. __________ regulates the rate of many metabolic pathways. 2. __________ attach to the enzyme at an allosteric site. 3. __________ can bind to an enzyme‘s active site and compete with substrate. 4. __________ is a place on an enzyme where a molecule that is not a substrate may bind. 105 Enzyme activity can be affected by a variety of factors, such as 5. __________, 6. __________, 7. __________, 8. __________, and 9. __________. 10. Evidently the graph on a substrate concentration will present a __________. What I Can Do • Performance Activity: Grow a plant. A plant can represent an enzyme while your water, soil and sunlight can represent the substrates. Guess what the inhibitors can represent? Maybe anything that will negatively affect the plant like not watering it on schedule, not getting enough sunlight and so much more. We know the byproducts of the plants that are well taken care of, right? Food and oxygen, or something beneficial to us. 1. Gather a recyclable container like cola bottles, loam soil, fertilizer, etc. Use tools needed like a small shovel or trowel for transferring the soil inside the container. 3. Decide on a plant you want to easily take care and be beneficial for your household. Then, secure the seeds or graft of the plant you decided on. Plant it. 4. Document everything for a month (photos included if possible), starting from the first day of listing down the materials and recording the plant‘s growth in centimeters. Keep a record notebook for the schedule of submission. .. Assesment Write the letter of the best answer in the blank. _____1. Catalyze group transfer reactions; often require coenzymes. a. Transferases b. Hydrolases c. Lyases d. Isomerases _____2. Where the reaction is catalysed in an enzyme? a. Facilitated site b. Active site c. Passive site d. Direct site 106 _____3. Lysis of substrate; produce contains double bond. a. Transferases b. Hydrolases c. Lyases d. Isomerases _____4. True to temperature as a factor of enzymatic reaction. a. This factor at an optimum level, near neutral, causes enzymes to catalyze a reaction most rapidly. b. Changing this factor outside the enzyme‘s optimum range will slow enzyme activity. c. At the saturation point, the reaction will not speed up, no matter how much of this factor is added. d. Increasing this factor can cause an enzyme to lose its shape (denature) and stop working. _____5. Enzymes are described as all of the above except a. micromolecule b. macromolecule c. stereospecific d. having a defined amino acid sequence _____6. Active forms from one of the inactive enzyme . a. Apoenzyme b. Holoenzyme c. Cofactor d. Coenzyme _____7. Enzymes described having a typically long amino acid sequence about? a. 100-400 b. 100-500 c. 100-600 d. 100-700 _____8. Occurs when an atom‘s oxidation state decreases during a reaction. a. Oxidation b. Reduction c. Reduction-Oxidation Reaction d. All are correct. _____9. Contains the element that is oxidized.. a. Reactant b. Reagent c. Reductant d. Oxidant 107 _____10. All the statements are not true to the substrate concentration, except for... a. This factor at an optimum level, near neutral, causes enzymes to catalyze a reaction most rapidly. b. Changing this factor outside the enzyme‘s optimum range will slow enzyme activity. c. At the saturation point, the reaction will not speed up, no matter how much of this factor is added. d. Increasing this factor can cause an enzyme to lose its shape (denature) and stop working. _____11. Substance added to test if a reaction occurs. a. Reactant b. Reagent c. Reductant d. Oxidant _____12. Occurs when an atom‘s oxidation state increases during a reaction. a. Oxidation b. Reduction c. Reduction-Oxidation Reaction d. All are correct. _____13. Oxidizing agent lowers the oxidation number of a given element. a. True b. False _____14. True to oxidation-reduction (redox) reaction. Except… a. OXIDATION can be removal of hydrogen/ electropositive element from a substance. b. REDUCTION can be removal of oxygen/electronegative element from a substance. c. Spontaneous redox reactions are generally endothermic. d. All redox reactions involve the transfer of electrons from one atom to another. _____15. A substance consumed in the course of a chemical reaction. a. Reactant b. Reagent c. Reductant d. Oxidant _____16. Regulates the rate of many metabolic pathways. a. Feedback inhibition b. Noncompetitive inhibitors. c. Competitive inhibitor. d. Substrate Concentration 108 _____17. Can bind to an enzyme‘s active site and compete with substrate. a. Feedback inhibition b. Noncompetitive inhibitors. c. Competitive inhibitor d. Substrate Concentration _____18. Contains the element that is reduced. a. Reactant b. Reagent c. Reductant d. Oxidant _____19. Attach to the enzyme at an allosteric site a. Feedback inhibition b. Noncompetitive inhibitors c. Competitive inhibitor d. Substrate Concentration _____20. True to pH, except for... a. This factor at an optimum level, near neutral, causes enzymes to catalyze a reaction most rapidly. b. Changing this factor outside the enzyme‘s optimum range will slow enzyme activity. c. At the saturation point, the reaction will not speed up, no matter how much of this factor is added. d. Increasing this factor can cause an enzyme to lose its shape (denature) and stop working. 109 Disorders and Diseases that Result from the Malfunction of the Cell during the Cell Cycle What I Know 1b 2a 3d 4a 5c What I Have Learned 1. Down Syndrome 2.Klinefelter syndrome 3.Patau syndrome and 4.Cri du chat syndrome 5. Aneuploidy 6. Leukemia 7. 90% 8. egg formation 9. sperm formation 10. cancer cell 7.1 Structural Components of the Cell Membrane What I Know 1a 2a 3d 4c 5a 6 are amphipathic molecules 7 Tucked between the hydrophobic tails of the membrane phospholipids 8 Transport of substance through membrane 9 Cell recognition 10 Attached to proteins or lipids on the extracellular side of the membrane What I Have Learned 1. fluid mosaic model , fluid mosaics of lipids and proteins 2 phospholipids 3 Carbohydrates 4 To identify the cell to other cells 5 temperature 6 enclose, define 7 Membrane transport 8 Integral Protein 110 7.2 The Relationship of the Structure and Composition of the Cell Membrane to its Function What I Know 1a 2a 3c 4b 5a 6 protect the cell from its surroundings 7 allow cells to recognize one another 8 provide shape and integrity to the cell 9 transports small organic molecules 10 provide extracellular attachment sites What‘s New 1 glycoprotein 2 glycolipid 3 peripheral membrane 4 integral membrane 5 cytoskeletal filaments 6 cholesterol 7 protein channel 8 phopsolipid bilayer 7.3 Transport Mechanisms in Cells 7.4 Endocytosis vs. Exocytosis What I Know 1d 2a 3d 4c 5a 6 Exocytosis refers to the transportation of molecules or particles from the cell to the outside of the cell 7 Involved with up taking nutrients into the cell 8 Occurs by both phagocytosis and pinocytosis 9 Secretory vesicles are formed 10 Not involved 11 Engulfing bacteria by phagocytes ANSWER KEY 7 Assesment 1a 2a 3a 4c 5d 6a 7a 8a 9b 10c 11d 12d 13a 14c 15a 16a 17d 18b 19c 20d 8.1 Components of an Enzyme What I Know 1b 2a 3c 4a 5b 6b 7 A substance that speeds up a chemical reaction without being changed 8 The part of the enzyme where the substrate binds 9 A biological catalyst (usually a protein) 10The reactant molecule that an enzyme works on What I have Learned 1T 11T 2F 12F 3T 13F 4F 14T 5T 15T 6F 7T 8F 9F 10T 111 8.2 Oxidation/Reduction Reactions What I Know 1 addition of oxygen/electronegative element to a substance or removal of hydrogen/ electropositive element from a substance 2 removal of oxygen/electronegative element from a substance or addition of hydrogen/ electropositive element to a substance 3 reagent which increases the oxidation number of an element of a given substance 4 a reagent that lowers the oxidation number of a given element 5 a substance consumed in the course of a chemical reaction What I Have Learned 1b 2a 3c 4d 5b 6a 7b 8c 8.3 Determining the Factors Affecting Enzyme Activity What I Know 1 b,f 2 a,c 3 e,h 4 d,g What I have Learned 1 Feedback inhibition 2Noncompetitive inhibitors 3Competitive inhibitor 4Allosteric site 5temperature, 6pH, 7enzyme concentrations 8substrate concentrations 9 inhibitors 10plateau ANSWER KEY 112 8 Assesment 1a 2b 3c 4d 5a 6b 7b 8b 9c 10c 11a 12a 13b 14c 15b 16a 17c 18d 19b 20a ANSWER KEY References GENERAL BIOLOGY 1 SPECIALIZED SUBJECT | ACADEMIC-STEM, The Commission on Higher Education, Philippine Normal University (2016) https://bit.ly/2DCe9kz (Restrictions are imposed) DEPED Learning Modules Grade 7-10 General Biology 1, Authors: Connie Rye, Robert Wise, Vladimir Jurukovski, Jean DeSain, Jung Choi, Yael Avissar, localized by Giselle Magcamit-Belardo, The Cell Membrane, Geonyzl Alviola, (2009) pdf, https://www.slideshare.net/geonyzl/the-cell-membrane-2639139 Membrane Transport, wikipedia.org https://en.wikipedia.org/wiki/Membrane_transport Structural components of Cell Membrane, A-LevelBiology (2020) https://alevelbiology.co.uk/notes/plasma-membrane-structure-andfunctions/ Structure of the Plasma Membrane, www.khanacademy.org (2020) https://www.khanacademy.org/science/high-school-biology/hs-cells/hsthe-cell-membrane/a/structure-of-the-plasma-membrane Chapter 5. 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License: CC BYSA: Attribution-ShareAlike https://courses.lumenlearning.com/boundlessbiology/chapter/components-and-structure/ Active transport https://kaiserscience.wordpress.com/biology-the-livingenvironment/cells/active-transport-across-cell-membranes/ Mariana Ruiz Villarreal 27 July 2007 https://en.wikipedia.org/wiki/Endocytosis Difference Between Endocytosis and Exocytosis 2017 by Lakna https://pediaa.com/difference-between-endocytosis-and-exocytosis/ GENERAL BIOLOGY 1 SPECIALIZED SUBJECT | ACADEMIC – STEM by The Commission on Higher Education and Philippine Normal University (2016) pp 78-85; 114 Enzymes review 2020 Khan Academy https://www.khanacademy.org/science/high-school-biology/hs-energyand-transport/hs-enzymes/a/hs-enzymes-review Enzyme structure and function by wikiversity.org (2020) https://bit.ly/2CgCMCB https://www.livescience.com/45145-how-do-enzymes-work.html https://www.britannica.com/science/enzyme Chapter 5 Microbial Metabolism, Melinda Grant (2018) https://slideplayer.com/slide/12502012/ Structural Biochemistry/Enzyme/Cofactors by en.wikibooks.org (2019) https://en.wikibooks.org/wiki/Structural_Biochemistry/Enzyme/Cofactors Oxidation-Reduction Reactions, Christopher Spohrer (UCD), Christina Breitenbuecher (UCD), Luvleen Brar (UCD) (2020) https://chem.libretexts.org/Bookshelves/Analytical_Chemistry/Suppleme ntal_Modules_(Analytical_Chemistry)/Electrochemistry/Redox_Chemistr y/Oxidation-Reduction_Reactions Chapter 8 redox reactions ppt for class 11 CBSE, ritik (2015) https://www.slideshare.net/deepikajonnes/chapter-8-redox-reactionsppt-for-class-11-cbse Factors Affecting Enzyme Activity, Charles C. Worthington, Von Worthington, Andrew Worthington, Ph.D. (2019) http://www.worthingtonbiochem.com/introbiochem/factors.html#:~:text=Several%20factors%20 affect%20the%20rate,of%20any%20inhibitors%20or%20activators. https://www.britannica.com/science/enzyme/Factors-affecting-enzymeactivity Factors affecting enzyme activity https://www.khanacademy.org/science/high-school-biology/hs-energyand-transport/hs-enzymes/a/hs-enzymes-review Factors-Affecting-Enzymatic-Activity-Notes-PDF by easybiologyclass.com https://bit.ly/2W3SFU9 Factors affecting enzyme activity by www.khanacademy.org https://bit.ly/3iL9XPr 115 (OUTSIDE BACK COVER) For inquiries or feedback, please write or call: Department of Education – Division of Cagayan de Oro City Office Address: Fr. William F. Masterson Ave Upper Balulang Cagayan de Oro Telephone Nos.: (08822)855-0048 E-mail Address: cagayandeoro.city@deped.gov.ph 116