University of Zakho Faculty of science DNA Genes and cell division Department of Biology Plant Botany I theory (1) The discovery of DNA structure by James Watson and Francis Crick was a major breakthrough in science (1953). They proposed a model of a double helix that has become the most famous and intensely studied molecule in science. DNA, genes, and chromosomes and how they can control the activities of a cell. Also, you will learn about cell division and the life of a dividing cell during the stages of the cell cycle. A nucleus contains DNA associated with proteins that make up the chromosomes. Plant genes are found in the chromosomes, and DNA is the genetic material. Functions of the genes: (1) Transmission of the genetic information. (2) Expression of the genetic information. What are genes, and why are they important? The DNA makes up genes and genes are organized into chromosomes. A gene is a sequence of DNA that codes for a gene product, usually a protein (genes also code for RNA as a product). Most recently, it has been shown that a gene can actually code for several proteins, so our definition might state "single or several proteins", or RNA. Also, some segments of DNA have a regulatory role in transcription and form no known gene product. As you can see defining a gene can be confusing, but most biologists agree that a gene is the basic unit of heredity. Page 1 University of Zakho Faculty of science Department of Biology Plant Botany I theory (1) Keep in mind two roles of genes that give them importance in nature: 1. Genes are the genetic information passed to the next generation of offspring cells following division of the parental cell. Genes are instructions passed to offspring cells as parental cells divide. This role is really that of heredity, as genes, which carry the genetic information, are transmitted from parent to offspring. Genes are the units of inheritance. 2. In cells, genes are the molecular blueprints for the production of proteins; these proteins control the structure, development, and activities of a cell as it grows and develops. DNA directs the synthesis of RNA, which in turn directs the assembly of amino acids into proteins. The sequence of DNA ---> RNA ---> protein has been called the dogma of protein synthesis since it occurs in all organisms including plants and animals. We now know that chromosomes are made of genes that control the cell. In turn, genes are made of DNA. It is important to know basic chromosome and DNA structure to understand the critical functions of genes. Remember that structure-function relationships are of major importance in botany. Chromosomes and DNA provide a good example of this relationship at the molecular level. Chromosomes examined by electron microscopy appear as small beads on a thin string. The beads are actually called nucleosomes and are the basic structural unit of all eukaryotic chromosomes. Nucleosomes probably help keep the long DNA molecules untangled and organized inside the nucleus. Also, nucleosomes may help control which genes are expressed. (Nucleoside = Base + Sugar ----- Nucleotide = Base + Sugar + Phosphate). Page 2 University of Zakho Faculty of science Department of Biology Plant Botany I theory (1) Nucleosomes consist of: (1) DNA (2) Chromosomal proteins called histones. DNA appears to wrap around four kinds of histones, forming a nucleosome that looks like a small bead (fig. 1) and most certainly contains the DNA of numerous genes. Nucleosomes are separated by spacer DNA, which is associated with a fifth histone that apparently binds nucleosomes together in a regular, repeating array. The entire DNA plus histone association, including the nucleosomes, is called Chromatin. Chromatin is folded into loops that extend from the main axis of the chromosome The discovery of DNA structure The structure of DNA was first correctly recognized by James Watson and Francis Crick of Cambridge University they are therefore credited with first describing the structure of DNA, the most significant discovery in biology of the twentieth century. In 1962, Watson and Crick, with associate Maurice Wilkins, received a Nobel Prize for their landmark effort. Watson and Crick's model of DNA was a double helix that is, a two-stranded spiral (fig.2). Watson and Crick actually built a model of a DNA molecule by putting together pieces of metal to represent the chemical components of DNA. The nitrogen-containing bases of each nucleotide show specific pairing; that is, thymine pairs only with adenine, and cytosine pairs only with guanine. This pairing joins the two strands made of the deoxyribose sugar and phosphate that form the backbone of a DNA molecule. The variability of the base sequence in DNA explains the enormous diversity of genes and organisms in nature, for it is the sequence of these bases that determines genetic variability. The impact of the Watson - Crick Model was immediate. The model Page 3 University of Zakho Faculty of science Department of Biology Plant Botany I theory (1) hinted that different genes could exist as base sequences of different lengths. The structure of DNA also explains its role in directing RNA synthesis inside the nucleus as DNA serves as a template for the assembly of RNA. Fig 1 : Diagrams and electron micrographs of DNA and histone proteins in chromatin Fig2 : The double-helical structure of the DNA Page 4 University of Zakho Faculty of science Department of Biology Plant Botany I theory (1) How Do Genes Work? In cells, proteins are made in the cytosol in ribosomes, not in the nucleus, where most of the plant's genes (DNA) occur. This observation was one of the first clues that genes do not make proteins directly and that RNA is involved in the process. This observation is a start to answer our question about how genes work. RNA is transcribed in the nucleus and translated in the cytosol. The directed assembly of amino acids into a protein is a multi-step process that begins when the DNA of a gene in the nucleus is used as a template for making RNA. This process of RNA synthesis is called transcription. RNA fresh off the DNA template is often referred to as the primary transcript, or pre-RNA, because, while still in the nucleus, RNA is chemically modified, then spliced َرب ََطand reassembled َوأعادََتجميعbefore export as mature RNA into the cytosol. There are three main kinds of RNA transcribed in the cell nucleus on a DNA template. 1. Messenger RNA (mRNA) is the actual message coded from DNA that directs the synthesis of a protein in a ribosome, and carries the DNA message from gene to ribosome. 2. Transfer RNA (tRNA) binds to amino acids and brings (transfers) them to a ribosome as specified by mRNA. 3. Ribosomal RNA (rRNA) combines with ribosomal proteins, forming a ribosome, the workbench of protein synthesis. Page 5 University of Zakho Faculty of science Department of Biology Plant Botany I theory (1) In every cell-plant, animal, fungus, bacterium-all three kinds of RNA are essential for protein synthesis. The process of linking amino acids into a protein in a ribosome is called translation, or protein synthesis. The directions for translation are contained in mRNA. Once translation is complete, proteins are often assembled into multi chain units or otherwise modified before becoming functional proteins. Overall, the way genes work (gene expression) to transfer genetic information from a DNA template into the structure of a protein can be summarized as follows: Nuclear DNA (genes) Transcription َالنسخة Pre-mRNA Editing, then export to cytosol Mature mRNA Translation َالترجمة Protein Assembly, modification Functional protein (here an enzyme) Catalysis Chemical reaction that determines a trait DNA ultimately directs the synthesis of the red pigment, which serves as an example of the expression of a genetic trait-red color in the petal. Page 6