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Cogen AL, Nizet V, Gallo RL (2008) Skin microbiota: a source of disease or
defence? Br J Dermatol 158: 442-455.
Shendure J, Ji H. Next-generation DNA sequencing. Nat. Biotechnol. 2008;26:1135–
1145. [PubMed] [Google Scholar]
Whitman WB, Coleman DC, Wiebe WJ. Prokaryotes: the unseen majority. Proc.
Natl. Acad. Sci. USA. 1998;95:6578–6583. [PMC free article] [PubMed] [Google
Grice EA, Segre JA. The skin microbiome. Nat. Rev. Microbiol. 2011;9(4):244–
253. [PMC free article] [PubMed] [Google Scholar]
Belkaid Y, Tamoutounour S. The influence of skin microorganisms on cutaneous
immunity. Nat. Rev. Immunol. 2016;16(6):353–366. [PubMed] [Google Scholar]
Zhang, H., J. K. DiBaise, A. Zuccolo, D. Kudrna, M. Braidotti, Y. Yeisoo, P.
Parameswaran, M. D. Crowell, R. Wing, B. E. Rittmann, and R. Krajmalnik-Brown. 2009.
Human gut microbiota in obesity and after gastric bypass. Proc. Natl. Acad. Sci. U. S.
A. 106:2365-2370. Abstract/FREE Full TextGoogle Scholar
Grice EA, Segre JA. 2011. The skin microbiome. Nat. Rev. Microbiol. 9:244–
253. doi:10.1038/nrmicro2537. CrossRefPubMedGoogle Scholar
8. K. Becker, C. Heilmann, G. PetersCoagulase-negative staphylococci Clin. Microbiol.
Rev., 27 (2014), pp. 870-926
9. Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC, NISC Comparative
Sequencing Program, Bouffard GG, Blakesley RW, Murray PR, Green ED, Turner ML,
Segre JA. 2009. Topographical and temporal diversity of the human skin microbiome
Science 324:1190-1192.
Wos-Oxley ML, Plumeier I, von Eiff C, Taudien S, Platzer M, Vilchez- Vargas R,
Becker K, Pieper DH. 2010. A poke into the diversity and associations within human
anterior nare microbial communities. ISME J. 4:839–851.
Graham JE, Moore JE, Jiru X, Moore JE, Goodall EA, Dooley JS, Hayes VE, Dartt
DA, Downes CS, Moore TC. 2007. Ocular pathogen or commensal: a PCR-based study of
surface bacterial flora in normal and dry eyes. Invest. Ophthalmol. Vis. Sci. 48:5616–
5623. http://dx.doi.org /10.1167/iovs.07-0588.
Willcox MD. 2013. Characterization of the normal microbiota of the ocular surface.
Exp. Eye Res. 117:99 –105. http://dx.doi.org/10.1016/j .exer.2013.06.003.
Iwase T, Uehara Y, Shinji H, Tajima A, Seo H, Takada K, Agata T, Mizunoe Y.
2010. Staphylococcus epidermidis Esp inhibits Staphylococcus aureus biofilm formation
and nasal colonization. Nature 465:346–349. http://dx.doi.org/10.1038/nature09074.
Nodake Y, et al. Pilot study on novel skin care method by augmentation with
Staphylococcus epidermidis, an autologous skin microbe – a blinded randomized clinical
trial. J Dermatol Sci. 2015. https://doi.org/10.1016/j.jdermsci.2015.05.001.
Sonnenburg, J. L. Microbiome engineering. Nature 518, S10–S10 (2015).
E. Rubinchik, D. Dugourd, T. Algara, C. Pasetka, H. D. Friedland, Antimicrobial and
antifungal activities of a novel cationic antimicrobial peptide, omiganan, in experimental
skin colonisation models. Int. J. Antimicrob. Agents 34, 457–461 (2009).
A. Tanca, A. Palomba, M. Deligios, T. Cubeddu, C. Fraumene, G. Biosa, D.
Pagnozzi, M. F. Addis, S. Uzzau, Evaluating the impact of different sequence databases on
metaproteome analysis: Insights from a lab-assembled microbial mixture. PLOS ONE
8,e82981 (2013).
Segre, J. A. (2006). Epidermal barrier formation and recovery in skin disorders. J.
Clin. Invest. 116, 1150–1158. doi: 10.1172/JCI28521
Grice, E. A., and Segre, J. A. (2011). The skin microbiome. Nat. Rev. Microbiol. 9,
244–253. doi: 10.1038/nrmicro2537
Sanford, J. A., and Gallo, R. L. (2013). Functions of the skin microbiota in health and
disease. Semin. Immunol. 25, 370–377. doi: 10.1016/j.smim.2013.09.005
Scheimann, L. G., Knox, G., Sher, D., and Rothman, S. (1960). The role of bacteria in
the formation of free fatty acids on the human skin surface. J. Invest. Dermatol. 34, 171–
174. doi: 10.1038/jid.1960.23
Schommer, N. N., and Gallo, R. L. (2013). Structure and function of the human skin
microbiome. Trends Microbiol. 21, 660–668. doi: 10.1016/j.tim.2013.10.001
Nodake, Y., Matsumoto, S., Miura, R., Honda, H., Ishibashi, G., Matsumoto, S., et al.
(2015). Pilot study on novel skin care method by augmentation with Staphylococcus
epidermidis, an autologous skin microbe-a blinded randomized clinical trial. J. Dermatol.
Sci. 79, 119–126. doi: 10.1016/j.jdermsci.2015.05.001
Belkaid, Y., and Segre, J. A. (2014). Dialogue between skin microbiota and
immunity. Science 346, 954–959. doi: 10.1126/science.1260144
Schleifer KH, Kloos WE. 1975. Isolation and characterization of staphylococci from
human skin. I. Amended descriptions of Staphylococcus epidermidis and Staphylococcus
saprophyticus and descriptions of three new species: Staphylococcus cohnii,
Staphylococcus haemolyticus, and Staphylococcus xylosus. Int. J. Syst. Bacteriol. 25:50–
Kloos WE, Musselwhite MS. 1975. Distribution and persistence of Staphylococcus
and Micrococcus species and other aerobic bacteria on human skin. Appl. Microbiol.
Kloos WE, Schleifer KH. 1975. Isolation and characterization of staphylococci from
human skin. II. Description of four new species: Staphylococcus warneri, Staphylococcus
capitis, Staphylococcus hominis, and Staphylococcus simulans. Int. J. Syst. Bacteriol.
Kloos WE, Schleifer KH. 1983. Staphylococcus auricularis sp. nov.: an inhabitant of
the human external ear. Int. J. Syst. Bacteriol. 33:9–14.
Bieber L, Kahlmeter G. 2010. Staphylococcus lugdunensis in several niches of the
normal skin flora. Clin. Microbiol. Infect. 16:385–388. http://dx.doi.org/10.1111/j.14690691.2009.02813.x.
van der Mee-Marquet N, Achard A, Mereghetti L, Danton A, Minier M, Quentin R.
2003. Staphylococcus lugdunensis infections: high frequency of inguinal area carriage. J.
Clin. Microbiol. 41:1404–1409. http://dx.doi.org/10.1128/JCM.41.4.1404-1409.2003.
Bieber L, Kahlmeter G. 2010. Staphylococcus lugdunensis in several niches of the
normal skin flora. Clin. Microbiol. Infect. 16:385–388. http://dx.doi.org/10.1111/j.14690691.2009.02813.x.
Structure, function and diversity of the healthy human microbiome. Nature 486, 207–
214 (2012).
Grice EA, Segre JA. The skin microbiome. Nat Rev Microbiol. 2011;9:244–53.
Kong HH, et al. Temporal shifts in the skin microbiome associated with disease flares
and treatment in children with atopic dermatitis. Genome Res. 2012;22:850–9.
Lomholt HB, Kilian M. Population genetic analysis of Propionibacterium acnes
identifies a subpopulation and epidemic clones associated with acne. PLoS One.
Kobayashi T, et al. Dysbiosis and Staphyloccus aureus colonization drives
inflammation in atopic dermatitis. Immunity. 2015;42:756–66.
Myles IA, et al. Transplantation of human skin microbiota in models of atopic
dermatitis. JCI Insight. 2016;1.
Alekseyenko AV, et al. Community differentiation of the cutaneous microbiota in
psoriasis. Microbiome. 2013;1:31.
Wang L, et al. Characterization of the major bacterial-fungal populations colonizing
dandruff scalps in Shanghai, China, shows microbial disequilibrium. Exp Dermatol.
Clavaud C, et al. Dandruff is associated with disequilibrium in the proportion of the
major bacterial and fungal populations colonizing the scalp. PLoS One. 2013;8:e58203.
Grice EA, Kong HH, Conlan S (2009). "Topographical and Temporal Diversity of the
Human Skin Microbiome". Science. 324 (5931): 1190–
1192. Bibcode:2009Sci...324.1190G. doi:10.1126/science.1171700. PMC 2805064. PMID
Pappas S. (2009). Your Body Is a Wonderland of Bacteria. ScienceNOW Daily News
Grice EA, Kong HH, Renaud G, Young AC, Bouffard GG, Blakesley RW, Wolfsberg
TG, Turner ML, Segre JA (2008). "A diversity profile of the human skin
microbiota". Genome Res. 18 (7): 1043–
50. doi:10.1101/gr.075549.107. PMC 2493393. PMID 18502944.
Costello EK, et al. Bacterial community variation in human body habitats across
space and time. Science. 2009; 326:1694–1697. [PubMed: 19892944] A comprehensive
analysis of skin, gut and oral microbiota in the same individuals.
Grice EA, et al. Topographical and temporal diversity of the human skin microbiome.
Science. 2009; 324:1190–1192. [PubMed: 19478181] A comprehensive analysis of skin
microbiota across 20 sites.
Gao Z, Tseng CH, Pei Z, Blaser MJ. Molecular analysis of human forearm superficial
skin bacterial biota. Proc. Natl Acad. Sci. USA. 2007; 104:2927–2932. [PubMed:
Chiller K, Selkin BA, Murakawa GJ. Skin microflora and bacterial infections of the
skin. J. Investig. Dermatol. Symp. Proc. 2001; 6:170–174.
Roth RR, James WD. Microbial ecology of the skin. Annu. Rev. Microbiol. 1988;
42:441–464. [PubMed: 3144238]
49.Cheung, Y.F., Fung, C., and Walsh, C. "Stereochemistry of propionyl-coenzyme A and
pyruvate carboxylations catalyzed by transcarboxylase." 1975. Biochemistry 14(13), pg
50.Rust, Susanne (4 February 2012). "UC Berkeley Bacteria Study: Research Shows Humans
A Major Source Of Germs". Huffington Post. San Francisco. Retrieved 2012-04-06.
51. Kiatpapan P., Murooka Y. Genetic manipulation system in propionibacteria. Journal of
Bioscience and Bioengineering. 93 (1) (pp 1-8), 2002
52.Woese, C. R. (1987). "Bacterial evolution". Microbiological Reviews. 51 (2):
22171. doi:10.1128/MMBR.51.2.221271.1987. PMC 373105. PMID 2439888.
Collins, M. D. (2004). "Corynebacterium caspium sp. nov., from a Caspian seal (Phoca
caspica)". International Journal of Systematic and Evolutionary Microbiology. 54 (3): 925–
8. doi:10.1099/ijs.0.02950-0. PMID 15143043.
Jacquemyn H, Lenaerts M, Brys R, Willems K, Honnay O, Lievens B (2013). "Among-
population variation in microbial community structure in the floral nectar of the bee-
pollinated forest herb Pulmonaria officinalis L." PLOS One. 8 (3):
e56917. doi:10.1371/journal.pone.0056917. PMC 3594240. PMID 23536759.
55. Madigan M, Martinko J, eds. (2005). Brock Biomlogy of Microorganisms (11th ed.).
Prentice Hall. ISBN 978-0-13-144329-7.
56.Takahashi T, Satoh I, Kikuchi N (April 1999). "Phylogenetic relationships of 38 taxa of the
genus Staphylococcus based on 16S rRNA gene sequence analysis". International Journal
of Systematic Bacteriology. 49 (2): 725–8. doi:10.1099/00207713-49-2725. PMID 10319495.
57. Kloos, W.; Schleifer, KH. Bergey's Manual of Systematic Bacteriology. PHA, S.; S, M.;
ME, S.; JG, H., editors. Baltimore: Williams & Wilkins; 1986.
Zhang YQ, et al. Genome-based analysis of virulence genes in a non-biofilm-forming
Staphylococcus epidermidis strain (ATCC 12228). Mol Microbiol 2003;49:1577–1593.
[PubMed: 12950922]
Duguid IG, Evans E, Brown MR, Gilbert P. Effect of biofilm culture upon the
susceptibility of Staphylococcus epidermidis to tobramycin. J Antimicrob
Chemother. 1992;30:803–810. [PubMed] [Google Scholar]
60.Ryan KJ, Ray CG, eds. (2004). Sherris Medical Microbiology (4th ed.). McGraw Hill.
pp. 293–4. ISBN 978-0-8385-8529-0.
61. Handelsman J. Metagenomics: application of genomics to uncultured microorganisms.
Microbiol Mol Biol Rev. 2004;68:669–85.
Carpi G, Cagnacci F, Wittekindt NE, et al. Metagenomic profile of the bacterial
communities associated with Ixodes ricinus ticks. PLoS One. 2011;6:e25604.
Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, et al. Using
pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics. 2006;7:57.
Chen K, Pachter L. Bioinformatics for whole-genome shotgun sequencing of
microbial communities. PLoS Comput Biol. 2005;1:106–12.
Lazarevic V, Whiteson K, Gaia N, et al. Analysis of the salivary microbiome using
culture-independent techniques. J Clin Bioinforma. 2012;2:4.
Shah N, Tang H, Doak T, et al. Comparing bacterial communities inferred from 16S
rRNA gene sequencing and shotgun metagenomics. Pac Symp Biocomput. 2011:165–76.
Jeraldo P, Chia N, Goldenfeld N. On the suitability of short reads of 16S rRNA for
phylogeny-based analyses in environmental surveys. Environ Microbiol. 2011;13:3000–9.
Kim M, Morrison M, Yu Z. Evaluation of different partial 16S rRNA gene sequence
regions for phylogenetic analysis of microbiomes. J Microbiol Methods. 2011;84:81–7.
Chevreux B, Wetter T, Suhai S. Genome sequence assembly using trace signals and
additional sequence information computer science and biology. Proc German Conf
Bioinform. 1999;99:45–56.
Grice EA, Kong HH, Conlan S, et al. Topographical and temporal diversity of the
human skin microbiome. Science. 2009;324:1190–2.
Grice EA, Kong HH, Renaud G, et al. A diversity profile of the human skin
microbiota. Genome Res. 2008;18:1043–50.
Kong HH, Oh J, Deming C, et al. Temporal shifts in the skin microbiome associated
with disease flares and treatment in children with atopic dermatitis. Genome Res.
Borkowski AW, Gallo RL. The coordinated response of the physical and
antimicrobial peptide barriers of the skin. J. Invest. Dermatol. 2011; 131:285–287.
[PubMed: 21228809]
Braff MH, Bardan A, Nizet V, Gallo RL. Cutaneous defence mechanisms by
antimicrobial peptides. J. Invest. Dermatol. 2005; 125:9–13. [PubMed: 15982297]
Cogen AL, et al. Selective antimicrobial action is provided by phenol-soluble
modulins derived from Staphylococcus epidermidis a normal resident of the skin. J. Invest.
Dermatol. 2010;130:192–200. [PubMed: 19710683]
Cogen AL, et al. Staphylococcus epidermidis antimicrobial δ -toxin (phenol-soluble
modulin-γ) cooperates with host antimicrobial peptides to kill Group A Streptococcus.
PLoS ONE. 2010; 5:e8557. [PubMed: 20052280]