CCCOnline Course Syllabus COURSE INFORMATION COURSE TITLE: BIO204 - Microbiology COURSE DESCRIPTION: Designed for health science majors. Examines microorganisms with an emphasis on their structure, development, physiology, classification, and identification. The laboratory experience includes culturing, identifying, and controlling microorganisms with an emphasis on their role in infectious disease. This course is one of the Statewide Guaranteed Transfer courses. GT-SC1 CREDIT HOURS: 4 SUGGESTED PREREQUISITE KNOWLEDGE: Basic knowledge of Chemistry and Biology or BIO111 GUARANTEED TRANSFER (GT) PATHWAYS COURSE STATEMENT: The Colorado Commission on Higher Education has approved BIO 204 for inclusion in the Guaranteed Transfer (GT) Pathways program in the GT - SC1 Category. For Transferring students, successful completion with a minimum C - grade guarantees transfer and application of credit in this GT Pathways category. For more information on the GT Pathways program, go to GT Pathways. • BIO204 GT Pathways Required Syllabus GT - SC1: Natural & Physical Sciences Content Criteria Students should be able to: 1. The lecture content of a GT Pathways science course (GT-SC1): a. Develop foundational knowledge in specific field(s) of science. b. Develop an understanding of the nature and process of science. BIO204 Syllabus Page 1 c. Demonstrate the ability to use scientific methodologies. d. Examine quantitative approaches to study natural phenomena. 2. The laboratory (either a combined lecture and laboratory, or a separate laboratory tied to a science lecture course) content of a GT Pathways science course (GT-SC1): a. Perform hands-on activities with demonstration and simulation components playing a secondary role. b. Engage in inquiry-based activities. c. Demonstrate the ability to use the scientific method. d. Obtain and interpret data, and communicate the results of inquiry. e. Demonstrate proper technique and safe practices. GT-SC1 Competencies & student learning outcomes Competency: Inquiry and Analysis 4. Select or Develop a Design Process a. Select or develop elements of the methodology or theoretical framework to solve problems in a given discipline. 5. Analyze and Interpret Evidence a. Examine evidence to identify patterns, differences, similarities, limitations, and/or implications related to the focus. b. Utilize multiple representations to interpret the data. 6. Draw Conclusions a. State a conclusion based on findings. Competency: Quantitative Literacy: 1. Interpret Information a. Explain information presented in mathematical forms (e.g., equations, graphs, diagrams, tables, words). 2. Represent Information a. Convert information into and between various mathematical forms (e.g., equations, graphs, diagrams, tables, words). CCCONLINE COURSE POLICIES The CCCOnline Course Policies page contains information about the student's role in the classroom, grading policies, and rights and responsibilities. BIO204 Syllabus Page 2 COURSE MATERIALS Your textbook is available online as an eText. You do not need to purchase any additional materials. For specific information on refund policies and the optional black and white textbook available for purchase please contact the CCCOnline bookstore (link opens in new window). MINIMUM COMPUTER REQUIREMENTS To complete this course, you will need regular access to a computer from which you can get to the Internet and use email. In order to ensure that your course functions properly, you must run the System Check. This is a CRITICAL STEP, and taking the time to do it now will eliminate a tremendous amount of frustration for you later. To run the System Check, click Tools in the course NavBar and then click System Check. As a part of the course assignments, you will be required to create a brief video. You are provided the YuJa video editing and upload software in D2L, you will be required to provide a camera to record the video. There are multiple ways to create your video. You may use: • A smartphone device that has a camera (Consider having a friend or family member record you). If you use a smartphone, the YouTube app is an easy • way to record and have your video already uploaded. • An iPad or a tablet • A webcam that is built into your computer (Most new computers come with a built-in camera.) • A handheld Flip video camera (Make sure you know how to get the files onto your computer if you go this route.) • If you do not own a video camera, see if you can borrow one from a friend for the day REQUIRED ETEXT Microbiology: A Systems Approach, 5th ed. ISBN: 13-9781259706615 OPTIONAL PAPER TEXT Cowen, M.K. (2018). Microbiology: A systems approach, 5th ed. McGraw-Hill. BIO204 Syllabus Page 3 TEXTBOOK DIGITAL CONTENT This course uses Connect which contains the eText in addition to interactive media content to help you remember what you learn. • Visit the McGraw Hill Connect Course Start page for details on first access of the materials. To make sure your computer is set up correctly to access the eText and other digital content, review the McGraw Hill Connect Technical Support page, also linked in the Technical Support Module. MICROSCOPE 600x microscope or better available at your bookstore, from local sources, or online. LAB KIT This course uses a lab kit. You do not need to separately purchase this lab kit, the cost of the lab kit is included in your course fees. The microscope is not part of the lab kit and therefore, must be purchased separately. Your required lab kit will be shipped to you after the drop date for this semester. A pop-up window will appear in your course for you to submit your shipping address prior to the drop date. The address you provide must be a physical address and not a PO Box. Lab kits are sent via UPS, which is unable to deliver to a PO Box. Students who live abroad should complete this form by the third day of class. If you do not receive your lab kit please contact your instructor and the CCCOnline Bookstore at bookstore@ccconline.org . If you do not receive your lab kit due to an old or inaccurate mailing address, there will be no deadline extensions for lab assignments. CCCOnline is not responsible for delays or lost lab kits due to customs or APO processing. Click on this link for Lab Kit FAQ's. CAROLINA BIOLOGICAL LABS This course uses the Carolina Biological Lab kit. The lab procedures for each experiment have been posted under the “Content” tab in “Lab Manual” module. MINIMUM TECHNICAL SKILLS AND COMPUTER REQUIREMENTS To complete this course, you will need regular access to a computer from which you can get to the Internet and use e-mail. In order to ensure that your course functions properly, you MUST run a System Check. Or you can click Tools in the course NavBar and then click BIO204 Syllabus Page 4 System Check.This is a CRITICAL STEP, and taking time to do it now will eliminate a tremendous amount of frustration for you later. • Be sure a word processing program is installed on your computer. MS-Word is preferred. • Be sure your student email account is active and working. • Be sure you have enough time to devote to this class. An online course is not self paced and has regular due dates and assignment deadlines. They are designed to have the same high quality content as any other college level class but in a different delivery system. PLUG-INS AND EXTRAS Recommended Software During this course, we will be viewing and editing a number of PDFs. To view and edit these resources, you will need the following tools: • Adobe Acrobat or PDFescape • Microsoft Word or OpenOffice BIO204 Syllabus Page 5 COURSE COMPETENCIES AND OUTCOMES STUDENT COMPETENCIES: The competencies you will demonstrate in this course are as follows: A. Demonstrate an understanding of the terminology and principles of basic chemistry, cell structure and function, bioenergetics, cell reproduction and genetics, microbial taxonomy, and Darwinian evolution. B. Demonstrate an understanding of microbial cell biology, and genetics. C. Demonstrate technical laboratory skills, such as microscopy, aseptic techniques, culturing and isolation, and media and material preparation and sterilization. D. Demonstrate cognitive laboratory skills, such as collection and analysis of data, identification of microbes, and communication of results. E. Demonstrate an understanding of terminology and principles immunology, epidemiology, and virology. F. Integrate themes by examining microbial evolution, diversity and disease. BIO204 Syllabus Page 6 REQUIRED TOPICAL OUTLINE I. Introduction a. Nature of Science b. Historical perspective of Microbiology c. Survey of microbes II. Fundamentals of biochemistry III. Process of identifying microbes IV. V. VI. VII. VIII. IX. X. a. Aseptic technique and safe practices b. Overview of laboratory methods and media c. Selective and differential media d. Microscopy and staining Prokaryotic microbes a. Cell structure b. Classification Eukaryotic microbes a. Cell structure b. Classification Viruses a. Structure b. Replication of viruses Microbial nutrition and growth a. Nutrition b. Environmental influences c. Microbial growth Microbial metabolism a. Aerobic respiration b. Anaerobic respiration c. Fermentation Microbial genetics a. Reproduction b. Horizontal gene transfer c. Methods of introducing variation in a population d. Gene expression e. Introduction to biotechnology Physical and chemical control of microbes BIO204 Syllabus Page 7 XI. Antimicrobial therapies XII. Process of infection XIII. XIV. a. Human microbiome b. Colonization c. Infection d. Epidemiology Host immune response a. Innate immune response b. Adaptive immune response Infectious diseases in humans a. Prokaryotic agents b. Eukaryotic agents c. Viral and non-cellular infectious agents The module outcomes that will permit you to demonstrate course competencies are: MODULE 1 Outcomes Competencies 1 Identify the microbiology themes and characteristics of prokaryotic cells A, B 2 Identify the tools used in a microbiology laboratory C 3 Analyze scientific data retrieved from CCCOnline library resources F 4 Develop a case study exploring pathogenesis E, F 5 Discuss examples of fraudulent scientific studies D 6 Discuss how advancements through research in the study of microbiology have impacted society and how society has impacted advancements in microbiology F MODULE 2 Outcomes 1 Explain viral life cycles, metabolic pathways, microbial growth patterns, and microbial genetics 2 Explain how microorganisms can be identified based on certain nutrient requirements 3 Discuss methods of cellular metabolism 4 Analyze data collected from laboratory experiments pertaining to Microscopy, bacterial morphology and Staining techniques and bacterial identification through functional media 5 Develop a case study exploring pathogenesis Competencies A, B, E, F A, D A C, D E, F BIO204 Syllabus Page 8 MODULE 3 Outcomes 1 Discuss the pathogenicity of microbes and the progression of infection 2 Determine proper use of antimicrobial drugs 3 Analyze data collected from laboratory experiments pertaining to environmental influences on microbial growth, bacterial enumeration and food safety 4 Develop a case study exploring pathogenesis Competencies E E, F C, D E, F MODULE 4 Outcomes 1 Explain pathogenicity, the immune system, and vaccines and immune system disorders 2 Research vaccines, their efficacy and how vaccines are preserved 3 Discuss vaccine prophylaxis 4 Analyze data collected from laboratory experiments pertaining to antiseptic and disinfectants, Kirby-Bauer diffusion for antibiotic effectiveness and hand washing and normal flora 5 Develop a case study exploring pathogenesis Competencies E, F E, F E C, D E, F MODULE 5 Outcomes 1 Explain pathogenesis and disease states within the human system 2 Discuss the spread of pathogens and how public health is being addressed in various communities 3 Present on an infectious disease affecting specific human body systems 4 Analyze laboratory data collected that explores the effect of microorganisms as vectors of diseases and ubiquity of microorganisms Competencies B, D E, F E C, D, F BIO204 Syllabus Page 9 GRADING AND EVALUATION METHODS: Evaluation includes a combination of discussion participation, assignments, and other evaluation. Rubrics are provided on the Course Rubrics page in the Syllabus module of Content. Teaching/learning methods may include (but are not limited to) reading assignments, LearnSmart assignments, exercises and problems, laboratory experiments, threaded discussion, audio/video clips, web searches and submissions, written assignments, and quizzes/exams. This page summarizes all of the graded assignments, quizzes/exams, and reading assignments for the course. You should print it out and post it somewhere handy. You will need to refer to it often. Assignments are described in detail in the Assignment Instructions and Guidelines section of the Syllabus module in Content, with supplemental instructions in the individual discussions, assignment folders, and quizzes themselves. If you have questions check there and/or send your instructor an email message. GRADING POLICIES: You may submit assignments AHEAD of schedule. Assignments, quizzes and exams will be given throughout the term with set due dates. See the course schedule for these dates and make note of them in your calendar. Any changes to these due dates will be communicated to the class by the instructor. If you have an emergency resulting in a missed due date, contact your instructor as soon as possible. No late work will be accepted without consent from your instructor. Please remember, due to the nature of an online course, it is the student’s responsibility to have access to a functioning computer in order to complete the coursework. Assignments must be submitted in a .doc or PDF format by the due date. This course is not self-paced and is not open-exit. All work is to be completed before 11:59PM Mountain Time on the due date listed in the Course Schedule. COMMUNICATION ABOUT DIFFICULTIES/ABSENCES: It is your responsibility to contact your instructor in a timely manner if you become ill, or have scheduling or computer problems that would keep you from participating in course activities for an entire week. KEEP A COPY OF ALL SUBMISSIONS Be sure to save copies of everything you send your instructor – email and assignments. Remember Murphy's Law – what can go wrong, will. BIO204 Syllabus Page 10 SUMMARY OF GRADING Assignment Points Discussions (7 @ 30 points each) 210 Homework Assignments (Connect) (4 @ 20 points each) 80 LearnSmart Assignments (Connect) (10 @ 3 points each) 30 Interactive Activities (Connect) (4 @ 20 points each) 80 Chapter Quizzes (Connect) (8 @ 15 points each) 120 Module Exams Part 1 (Connect) (4 @ 25 points each) 100 Module Exams Part 2 (Connect) (4 @ 25 points each) 100 Labs (3 @ 20pts./each, 7 @ 40pts./each, 2 @ 55pts./ each, and 2 @ 80pts./each) 610 Case Study Part 1 (10 points) 10 Case Study Part 2 (10 points) 10 Case Study Part 3 (10 points) 10 Case Study Part 4 - Final Paper (125 points) 125 Disease Presentation (120 points) 120 TOTAL 1605 % 13% 5% 2% 5% 8% 6% 6% 38% <1% <1% <1% 8% 8% 100% Grading Scale A = 90 to 100% B = 80 to 89% C = 70 to 79% D = 60 to 69% F = 59% and below BIO204 Syllabus Page 11 DISCUSSIONS Participation in Discussions is a very important part of this class experience and cannot be made up after each module's discussion ends. Discussions are where we discuss the readings and benefit from each class member's contributions and questions. You'll find Discussions within each module. You will be also expected to respond to your classmates' postings. You will be expected to offer helpful comments as you can. You'll want to be sure you do so to receive all points for the week. You will have a rubric to help you understand expectations for Discussions. Remember, you will receive points which will count toward your final grade for participating in the Discussions, so of course, not participating will have a negative effect on your final course grade. LAB ASSIGNMENTS Laboratory experiences provide the opportunity to form study groups for the "lecture" material as well as the lab activities. It is important that you understand the purpose of forming a study group and/or lab group is to share the learning experience and learn from one another. It is not to share the work itself! This means that, though you may work together, discuss the labs and study together, each student must complete, write and submit his/her own, individual, original work. All materials, results, graphics, etc. must be original to each individual student. Duplicate reports or assignments are considered an academic integrity infraction. However, you may use other students' work for comparison sake if, and only if, proper citation and credit is included. Enter into this method carefully. To avoid the possibility of plagiarism or cheating, contact your instructor for clarification and permission. For guidelines on required materials and when to begin Lab Assignments in order to complete them on time, review the Lab: Estimated Completion Times and Student Material Requirements page in the Lab Information > Requirements & Instructions section of the Syllabus module in Content. NOTE: You will be required to create a video of yourself performing both the Module 2 Aseptic Technique and Use of Media lab, and the Module 5 - Hand Washing Techniques lab, and submit a link to those videos (or upload the videos) to the appropriate assignment folders. For more information and video recording tips, see the Lab Kit Activity Video Instructions. LEARNSMART ASSIGNMENTS During this semester, we will be using the LearnSmart (LS) assignments in Connect (McGraw Hill site) for the selected chapters listed in the syllabus schedule. LearnSmart consist of adaptive learning tools that generate questions to help you assess your knowledge about the concepts covered in the chapters prior to taking the module exams. The selected chapters LearnSmart assignments are timed at 25 minutes each and must be completed before 11:59 pm Mountain time of their respective due dates listed in the syllabus schedule. BIO204 Syllabus Page 12 HOMEWORK ASSIGNMENTS Homework assignments covering specific chapters are assigned in Connect (McGraw Hill site) and consist of a set of questions which may include but not limited to videos/animations questions, short essay, fill-in the blank, concept map, multiple choice questions and true/false questions. Homework assignments are not timed, can be taken multiple times and must be completed before 11:59 pm Denver, Colorado time of their respective due date listed in the syllabus schedule. INTERACTIVE ACTIVITIES Interactive activities covering specific chapters are assigned in the Connect (McGraw Hill site) and consist of a set of questions which may include but not limited to animation questions, drag and drop, concept map, multiple choice questions and true/false questions. Interactive activities are timed at 30 minutes each and must be completed before 11:59 pm Denver, Colorado time of their respective due date listed in the syllabus schedule. QUIZZES/EXAMS Module Exams are closed book, closed notes, no internet searches and you may not get assistance from anyone. Module Exams can only be accessed once, you have only one attempt for each part and must be submitted before the time limit expires. Remember, assignments close at 11:59 pm Mountain Time. Each Module Exams consist of 2 parts: • Module Exams Part 1 in Connect (McGraw Hill site): are timed and consist of multiple choice and true/false questions. You have a total of 37.5 minutes (90 seconds per question) to answer them. This will be plenty of time if you have read and understood the chapters and the concepts covered in each one. • Module Exams Part 2 in Connect (McGraw Hill site): are also timed and consist of essay questions, fill in the blank and short answer questions. You have a total of 30 minutes to answer them. BIO204 Syllabus Page 13 COURSE SCHEDULE The Schedule is subject to change as needed. This page summarizes all of the graded assignments, exams, and reading assignments for the course. If you want, you can print it out and post it somewhere handy. All assignments are described in detail on the Module assignment pages. If you have questions check there and/or send me an e-mail. This course is not self-paced and is not open-exit. All assignments, papers, quizzes, discussions, etc., are to be completed by no later than 11:59 pm MST/MDT of the due date. NOTE: Important CCCOnline semester dates (e.g., drop/withdraw/term end) appear on the CCCOnline calendar. MODULE 1 Assignment Type Discussion Read LearnSmart assignment QuizChapter 1 in Connect Lab assignment D2L Quiz Read Interactive activity Discussion Read LearnSmart assignment QuizChapter 4 in Connect Lab assignment Homework assignment Lab assignment Case Study Assignment Exams Module 1 Exam in Connect Module 1 Part 2 Reading/Assignments/Exams Student Introductions: Getting to Know You! Chapter 1: The Main Themes of Microbiology Chapter 1 in Connect Due Dates Laboratory Safety Contract Laboratory Safety Quiz in D2L Chapter 3: Tools of the Laboratory In Connect (covering chapters 1 and 3) Fraudulent Data Chapter 4: Prokaryotic Profiles Chapter 4 in Connect Bacterial Morphology Virtual Lab Assignment #1 in Connect, covering chapters 1, 3 and 4 Staining Virtual Lab Case Study: Part 1 Module 1 Exam in Connect Module 1 Part 1 MODULE 2 Assignment Type Discussion Read Learn Smart assignment Read QuizChapter 7 in Connect Lab assignment Read Interactive activity Discussion Read LearnSmart assignment QuizChapter 9 in Connect Lab assignment Reading/Assignments/Exams Microbiology: A Young Science Chapter 6: An Introduction to the Viruses Chapter 6 in Connect Chapter 7: Microbial Nutrition, Ecology and Growth Due Dates Introduction to Microscopy Lab Chapter 8: Microbial Metabolism In Connect (covering chapters 7 and 8) Cellular Metabolism Chapter 9: Microbial Genetics Chapter 9 in Connect Aseptic Techniques and Use of Media Lab BIO204 Syllabus Page 14 Homework assignment Case Study Assignment Exams Module 2 Exam Part 2 in Connect Assignment #2 in Connect covering chapters 6, 7, 8 and 9 Case Study: Part 2 Module 2 Exam Part 1 in Connect MODULE 3 Assignment Type Discussion Read LearnSmart assignment Lab assignment Read LearnSmart assignment QuizChapter 12 in Connect Lab assignment Read Quiz Interactive activity Lab assignment Homework assignment Case Study Assignment Exams Module 3 Exam Part 2 in Connect Reading/Assignments/Exams Due Dates Pathogens Chapter 11: Physical and Chemical Control of Microbes Chapter 11 in Connect Isolation Streak Technique Lab with Formal Lab Report Chapter 12: Drugs, Microbes, Host Chapter 12 in Connect Use of Selective and Differential Media Lab Chapter 13: Microbe-Human Interactions: Infection and Disease Chapter 13 in Connect In Connect (covering chapters 12 and 13) Biochemical Tests in Microbiology Lab Assignment #3 in Connect covering chapters 11, 12 and 13 Case Study: Part 3 Module 3 Exam Part 1 in Connect MODULE 4 Assignment Type Discussion Read LearnSmart assignment Lab assignment Read Interactive activity Read QuizChapter 16 in Connect Lab assignment Homework assignment Lab assignment Case Study Assignment Exams Module 4 Exam Part 2 in Connect Reading/Assignments/Exams Vaccination Chapter 14: Host Defenses I: Overview and Nonspecific Defenses Chapter 14 in Connect Evaluation of Antiseptics and Disinfectants Lab with Formal Lab Report Chapter 15: Host Defenses II: Specific Immunity and Immunization In Connect (covering chapters 14 and 15) Chapter 16: Disorders in Immunity Due Dates Kirby-Bauer Method Lab Assignment #4 in Connect covering Chapters 14, 15 and 16 Simple and Differential Staining Lab Case Study: Part 4 Module 4 Exam Part 1 in Connect BIO204 Syllabus Page 15 MODULE 5 Assignment Type Discussion Lab assignment Read LearnSmart assignment QuizChapter 18 in Connect Lab assignment Read LearnSmart assignment Lab assignment Read LearnSmart assignment Presentation Reading/Assignments/Exams Spread of Pathogens Hand Washing Technique Lab Chapter 18: Infectious Diseases Affecting the Skin and Eyes Chapter 18 in Connect Due Dates Lysozyme Lab Chapter 19: Infectious Diseases Affecting the Nervous System Chapter 19 in Connect Diversity and Ubiquity of Microbes Lab Chapter 20: Infectious Diseases Affecting the Cardiovascular and Lymphatic Systems Chapter 20 in Connect Disease Presentation submission Last modified 9/2/2019 tlt BIO204 Syllabus Page 16