Moore/ Nash Review Packet 1 Mr. Moore/ Ms. Nash Revised Fall 2012 Moore/ Nash Review Packet 2 Bio.4.1.1 Compare the structure and function of each of the listed organic molecules in organisms: • Carbohydrates (glucose, cellulose, starch, glycogen) • Proteins (insulin, enzymes, hemoglobin) • Lipids (phospholipids, steroids) • Nucleic Acids (DNA, RNA) Bio.4.1.2 • Recall that the sequence of nucleotides in DNA codes for specific amino acids which link to form proteins. • Identify the five nitrogenous bases (A, T, C, G and U) found in nucleic acids as the same for all organisms. • Summarize the process of protein synthesis. Note: Students are not expected to memorize the names and/or structures or characteristics of the 20 amino acids. The focus should be on the fact that side chains are what make each of the amino acids different and determine how they bond and fold in proteins. Bio.4.1.3 • Develop a cause and effect model for specificity of enzymes - the folding produces a 3-D shape that is linked to the protein function, enzymes are proteins that speed up chemical reactions (catalysts) by lowering the activation energy, are re-usable and specific, and are affected by such factors as pH and temperature. Sample Questions: Why would a distance runner consume carbohydrates instead of proteins before a race? a. Carbohydrates provide insulation for heat. b. Carbohydrates provide structure for tissues. c. Carbohydrates provide genetic material for muscle cells. d. Carbohydrates provide energy for endurance. How does the DNA code become a protein? a. DNA mRNA a. DNA b. DNA c. DNA n How do enzymes speed up biological chemical reactions? a. Enzymes increase the energy required for a reaction to occur. b. Enzymes decrease the energy required for a reaction to occur. c. Enzymes have no affect on the energy required for a reaction to occur. d. Enzymes maintain the energy needed for a reaction to occur. Moore/ Nash Review Packet 3 Biology- The study of life and living organisms Biotic- carbon/hydrogen comes from life Abiotic- no carbon/hydrogennot organic Characteristics of life: o Organization- structure; all parts working together in an orderly living system (cells -> tissues -> organs -> organ systems -> organisms ) o Reproduction- the ability to make more of the same type of organism o Metabolism- all of the chemical reactions that occur within a living organism o Homeostasis- maintaining balance in internal environments o Adaptation/evolution- ability to respond to environmental factors Organic compounds/ Macromolecules o Also called polymers o Have subunits that are called monomers (building blocks) Mono 1 Di2 Poly More than 2 o 4 different types: Name Carbohydrate Monomer Monosaccharide Function Quick energy Protein Lipids Nucleic Acids Amino Acid Glycerol & Fatty Acids Nucleotide Building material Long term energy Protein instructions Test Iodine/ Benedicts Solution Biruet Solution Brown paper bag n/a Carbohydrates (polysaccharides) (usually end in –ose) Contain: Carbon, Hydrogen, Oxygen Monomer (building block): monosaccharide Function: quick energy Test with: iodine Examples: sugars, starches, glucose (made during photosynthesis) Structure: ring shaped Moore/ Nash Review Packet 4 Proteins (polypeptide chains) (usually end in –ase) Contain: Carbon, Hydrogen, Oxygen and Nitrogen Monomer (building block): amino acids Function: repair/build muscles, hair, nails Test with: Benedict’s solution Held together by: peptide bonds Made: at the ribosomes through transcription/translation with instructions from DNA Examples: meats, fish, chicken Structure: central carbon atom Important proteins: Enzymes (liver lab) Reduce activation energy needed for a chemical reaction to take place Speed up/slow down chemical reactions (organic catalyst) Have a specific shape Interact with a specific substrate (lock and key) Binds to substrate at active site Used over and over until denatured (broken/changed) by temperature or pH Moore/ Nash Review Packet 5 Lipids Contain: Carbon, Hydrogen, Oxygen Monomers (building blocks): glycerol and 3 fatty acids Function: long term energy, insulation, forms plasma membrane Test with: brown paper bag Examples: fats, oils, waxes Structure: glycerol and 3 fatty acid chains Glycerol Fatty Acid Fatty Acid Fatty Acid Nucleic Acids Contain: Carbon, Hydrogen, Oxygen and Nitrogen Monomer(building block): nucleotide (sugar, phosphate, nitrogen base) sugar Function: stores genetic material; direct all cell activities; information for making proteins Structure: helix shape (twisted ladder) (Watson and Crick discovered “double helix” shape of DNA) Replication: happens before mitosis/meiosis Ex: DNA and RNA DNA - double stranded - deoxyribose sugar - Bases: A & T, C &G RNA - single stranded - ribose sugar - Bases: A & U, C & G - 3 types: rRNA, mRNA, tRNA Moore/ Nash Review Packet 6 DNA structure RNA structure Cells o Cell theory Cells are the basic unit of life All organisms are composed of cells All cells come from preexisting cells o Prokaryotes vs. Eukaryotes * Simple * Complex * No nucleus *Membrane bound nucleus * No membrane bound organelles *Membrane bound organelles * Ex: bacteria, blue-green algae * Ex: Animals, plants, protists, fungi * formed first * formed later * smaller * bigger * has ribosomes * has ribosomes * anaerobic * aerobic Plant Animal * rectangular * circular shape * cell wall (made * no cell wall of cellulose) * large vacuole * smaller vacuoles * chloroplasts * Centrioles * autotrophs *heterotrophs Moore/ Nash Review Packet 7 Bio.1.1.1 • Identify these cell organelles in diagrams of plant and animal cells. (middle school review) • Explain how the structure of the organelle determines it function. (Example: folded inner membrane in mitochondria increases surface area for energy production during aerobic cellular respiration). • Summarize how these organelles interact to carry out functions such as energy production and use, transport of molecules, disposal of waste, and synthesis of new molecules. (Example: DNA codes for proteins which are assembled by the ribosomes and used as enzymes for energy production at the mitochondria). Bio.1.1.2 • Proficiently use proper light microscopic techniques as well as determine total power magnification. The purpose is to use microscopes to observe a variety of cells with particular emphasis on the differences between prokaryotic and eukaryotic as well as plant and animal cells. While students are not expected to understand how scanning and electron transmission microscopes work, they should recognize that they reveal greater detail about eukaryotic and prokaryotic cell differences. • Infer that prokaryotic cells are less complex than eukaryotic cells. • Compare the structure of prokaryotic and eukaryotic cells to conclude the following: – mitochondria, nucleus, vacuole, and chloroplasts are not present in prokaryotes. hromosome structure – circular DNA strands called plasmids are characteristic of prokaryotes. – prokaryotic cells are smaller. Bio.1.1.3 • Compare a variety of specialized cells and understand how the functions of these cells vary. (Possible examples could include nerve cells, muscle cells, blood cells, sperm cells, xylem and phloem.) • Explain that multicellular organisms begin as undifferentiated masses of cells and that variation in DNA expression and gene activity determines the differentiation of cells and ultimately their specialization. parts of the DNA that are activated determine the function and specialized structure of a cell. e potential to become any type of cell; however, once a cell differentiates, the process cannot be reversed. and DNA. used in different types of cells, influenced by the cell's environment and past history. • Recall that chemical signals may be released by one cell to influence the development and activity of another cell. • Identify stem cells as unspecialized cells that continually reproduce themselves and have, under appropriate conditions, the ability to differentiate into one or more types of specialized cells. embryonic stem cells. both embryonic and adult, with the right laboratory culture conditions, differentiate into specialized cells. Moore/ Nash Review Packet 8 Note: It is not essential for students to understand the details of how the process of transcriptional regulation in a cell produces specific proteins, which results in cell differentiation. Sample Questions: A runner is competing in a 10 km track meet and just before completing the race, the runner is nearly out of breath and the energy needed to finish the race. Which cell structure is most affected by this lack of energy? a. nucleus b. ribosome c. mitochondrion d. plasma membrane What can be used to distinguish between eukaryotic and prokaryotic cells? a. Only eukaryotic cells come from preexisting cells. b. Only prokaryotic cells are the smallest unit of living organisms. c. Only prokaryotic cells contain ribosomes. d. Only eukaryotic cells contain membrane-bound organelles Nerve cells and bone cells are specialized cells that descend from the same single cell (fertilized egg). Which statement best explains how each type of cell results in a different structure with a specialized function? a. Nerve cells and bone cells begin with the same structure; however, bone cells harden over time. b. Nerve cells and bone cells receive different DNA that determines the structure and function that each will perform. c. Nerve cells and bone cells receive the same DNA; however, only specific parts of the DNA are activated in each cell. d. Nerve cells and bone cells receive the same DNA; however, bone cells receive more to make the protective outer covering. Constructed Response: Explain how many of the cells in an individual can be very different from one another in terms of structure and function, even though they are descended from a single cell and thus have essentially identical genetic instructions? Moore/ Nash Review Packet 9 o Organelles Nucleus- holds genetic information; controls the activities of the cell; disappears during cell division Cytoplasm- clear, jelly-like substance inside cells; site of anaerobic cellular respiration Vacuole- storage of food, water, and other materials Mitochondria- aerobic cellular respiration- 36 ATP; highly folded inner membrane allows for greater chemical reaction; athletes have more; “powerhouse of cell” Ribosome (rRNA)- site of protein synthesis (translation); place where amino acids are synthesized; located either on ER or in cytoplasm Lysosome- “suicide sacs”; contain digestive enzymes ; remove waste; break down old or worn out cell parts (re-absorption) Centrioles- only in animal cells; helps separate sister chromatids during mitosis/meiosis Cell wall- rigid wall that supports cell; located outside plasma membrane; only in plant cells; made of cellulose; square shape; turgor pressure Chloroplasts- store chlorophyll; location of photosynthesis (sunlight + CO2 + H2O ----> C6H12O6 + O2 ) Plasma membrane- controls what enters and leaves the cell (cell door); phospholipid bilayer; fluid-mosaic model; made of lipids and proteins Moore/ Nash Review Packet 10 Bio.1.2.1 • Explain how cells use buffers to regulate cell pH and how cells can respond to maintain temperature, glucose levels, and water balance in organisms. • Compare the mechanisms of active vs. passive transport (diffusion and osmosis). • Conclude how the plasma membrane structure functions. • Explain changes in osmotic pressure that occurs when cells are placed in solutions of differing concentrations. Bio 4.2.2 Conclude that energy production by organisms is vital for maintaining homeostasis and that maintenance of homeostasis is necessary for life. Examples: Active transport of needed molecules or to rid the cell of toxins; movement to avoid danger or to find food, water, and or mates; synthesizing needed molecules. Sample Questions: The diagram below shows the same type of molecule on side A and side B. Over time, what is the likely result? a. More molecules will be on Side B than Side A. b. More molecules will be on Side A than Side B. c. Equal number of molecules will be on Side A & B. d. All of the molecules will move towards the membrane. The concentration of a certain molecule is greater inside the cell than outside the cell. If the cell needs more of that molecule, what is the best process to move more of this molecule inside the cell? a. Active transport Some substances enable solutions to b. Passive transport resist pH changes when an acid or c. Diffusion base is added. Such substances are d. Osmosis called buffers. Buffers are very important in helping organisms maintain a relatively constant pH (Help the organism maintain Homeostasis!). Moore/ Nash Review Packet 11 Cellular transport o Plasma membrane is selectively permeable (semi-permeable/porous) and controls what comes into/out of the cell Passive Transport - no energy required - moves down the concentration gradient (from high to low) - diffusion: moving substances - osmosis: diffusion of water - facilitated diffusion: moves large molecules with the assistance of a carrier protein Rules: 1. draw circle inside square 2. label the higher concentration of water 3. draw arrow from high to low High H2O Active Transport - requires energy - moves up the concentration gradient (from low to high) - non-equilibrium NOT ALWAYS INTO OR OUT OF CELL!!!! Rules: 1. draw circle inside square 2. label the higher concentration of water 3. draw arrow from low to high High H2O Cellular energy o All energy for life comes from the sun- capture during photosynthesis and released during cellular respiration; ATP is useable form of energy; ADP is the used form of that energy Moore/ Nash Review Packet 12 Bio.4.2.1 • Analyze overall reactions including reactants and products for photosynthesis and cellular respiration and factors which affect their rates (amounts of reactants, temperature, pH, light, etc.). • Compare these processes with regard to efficiency of ATP formation, the types of organisms using these processes, and the organelles involved. (Anaerobic respiration should include lactic acid and alcoholic fermentation.) Note: (1) Instruction should include the comparison of anaerobic and aerobic organisms. (2) Glycolysis, Kreb’s Cycle, and Electron Transport Chain are not addressed. Sample Question: How does the process of photosynthesis in plants provide energy for animals? a. The water and carbon dioxide used in photosynthesis are converted into glucose and ATP for animals. b. The glucose and ATP used in photosynthesis are converted into water and carbon dioxide for animals. c. The glucose and carbon dioxide used in photosynthesis are converted into proteins for animals. d. The oxygen and glucose produced through photosynthesis are converted into lipids for animals. Which statement best compares aerobic and anaerobic respiration? A Less ATP is generated during anaerobic respiration than during aerobic respiration. B More water is generated during anaerobic respiration than during aerobic respiration. C More oxygen is generated during anaerobic respiration than during aerobic respiration. D Less lactic acid is generated during anaerobic respiration than during aerobic respiration. If worldwide deforestation is not regulated, what could most likely result? A Acid rain could lower the pH of rivers and lakes to dangerous levels for aquatic life. B CO2 levels in the atmosphere could increase and contribute to global warming problems. C Plants and animals could become better adapted to living in desert conditions. D Future generations of humans could have an excess of wood and paper products. Moore/ Nash Review Packet 13 o Photosynthesis Converts sunlight to chemical energy Occurs in the chloroplasts (in plant cells) Green light is least effective Red/Blue light is most effective Main function is to make glucose (autotrophs = make own food) Sunlight carbon dioxide water glucose oxygen o Cellular Respiration Process by which organisms break down food to release its energy; breaks down the glucose made in photosynthesis Occurs in the mitochondria + + Glucose oxygen carbon dioxide Energy (ATP) water Carbon Dioxide (CO2) Moore/ Nash Review Packet 14 o Cellular Respiration- aerobic vs. anaerobic comparison no oxygen oxygen Cell Division o two types of cell division: mitosis- for body (somatic) cells meiosis- for sex cells (gametes) o mitosis /meiosis are used to ensure correct division of the chromosomes (DNA) 1- prophase; 2- metaphase; 3- anaphase; 4-telophase; 5- cytokinesis Moore/ Nash Review Packet 15 Bio.1.2.2 • Outline the cell cycle – Growth1, Synthesis, Growth2, Mitosis, and Cytokinesis. • Recognize mitosis as a part of asexual reproduction. (middle school review) • Organize diagrams of mitotic phases and describe what is occurring throughout the process. Bio.3.2.1 • Recall the process of meiosis and identify process occurring in diagrams of stages. (middle school review) Note: Students are not expected to memorize the names of the steps or the order of the step names. • Infer the importance of the genes being on separate chromosomes as it relates to meiosis. • Explain how the process of meiosis leads to independent assortment and ultimately to greater genetic diversity. • Exemplify sources of genetic variation in sexually reproducing organisms including crossing over, random assortment of chromosomes, gene mutation, nondisjunction, and fertilization. • Compare meiosis and mitosis including type of reproduction (asexual or sexual), replication and separation of DNA and cellular material, changes in chromosome number, number of cell divisions, and number of cells produced in a complete cycle. Sample Questions: A student observes a typical onion root tip where many of the cells have just successfully completed mitosis. Which statement best explains what must have happened to result in cells that only have half as many chromosomes as all of the other cells in the same section of the tip? a. The parent cell completed mitosis after undergoing interphase. b. The parent cell completed mitosis after undergoing cytokinesis. c. The parent cell completed mitosis before undergoing cytokinesis. d. The parent cell completed mitosis before undergoing interphase. Cell cycle checkpoints are proteins that monitor and regulate the progress of the cell cycle in eukaryotic cells. Which statement best describes what would most likely happen if a cell is permitted to progress to mitosis without the preparation stage of interphase? a. The new cells would have all of the organelles except the nucleus. b. The new cells would have all of the organelles except the mitochondria. c. The number of chromosomes in the daughter cells would be the same as the number of chromosomes in the parent cell. d. The number of chromosomes in the daughter cells would be different from the number of chromosomes in the parent cell. Why is the process of meiosis important to sexual reproduction? a. It provides genetic variation in offspring. b. It doubles the number of chromosomes in offspring. c. It reduces the number of alleles from parent to offspring. d. It produces a hybrid of all genetic traits in offspring. Moore/ Nash Review Packet 16 Interphase Prophase Metaphase G1, S, G2 Anaphase Telophase/Cytokinesis mitosis X2 meiosis o diploid- 2 sets of chromosomes; ½ from mom and ½ from dad o haploid- 1 set of chromosomes (monoploid) Mitosis (somatic cells) - 1 diploid cell 2 diploid cells - used for growth and repair of body cells - asexual reproduction (clones) Meiosis (gametes) - 1 diploid cell 4 haploid cells - used to produce: 4 sperm- males 1 egg/3 polar bodies- female - sexual reproduction (genetic variation) (crossing over/random assortment) 2n/ 2 chromosomes 2n/ 2 chromosomes n/ 1 chromosome 2n/ 2 chromosomes Moore/ Nash Review Packet 17 Examples: Asexual Reproduction Budding Moore/ Nash Review Packet 18 Sexual Reproduction Fertilization o fertilization- the joining of male (sperm) and female (egg) gametes together o zygote- cell formed from process of fertilization o differentiation/ specialization- generic cells becoming specialized (to do a certain job in the body) o cleavage- rapid cell division (mitosis) immediately after fertilization Genetics o the study of heredity heredity- the passing on of traits from parent to offspring Gregor Mendel- “father of genetics”; Austrian monk who studied pea plants Punnett square helps by showing all the possible gene combinations for a cross big letters = dominant; little letters= recessive Moore/ Nash Review Packet 19 Bio.3.1.1 • Develop a cause-and-effect model relating the structure of DNA to the functions of replication and protein synthesis: double helix or “twisted ladder” structure. The sides are composed of alternating phosphate-sugar groups and “rungs of the DNA ladder” are composed of complementary nitrogenous base pairs (always adenine, A, to thymine, T, and cytosine, C, to guanine, G) joined by weak hydrogen bonds. life. n exact copy of parental DNA. expression of genes. • Infer the advantages (injury repair) and disadvantages (cancer) of the overproduction, underproduction or production of proteins at the incorrect times. Bio.3.1.2 • Explain the process of protein synthesis: fied into the three types of RNA – tRNA supplies appropriate amino acids ides. Polypeptide chains form protein molecules. Proteins can be structural (forming a part of the cell materials) or functional (hormones, enzymes, or chemicals involved in cell chemistry). • Interpret a codon chart to determine the amino acid sequence produced by a particular sequence of bases. • Explain how an amino acid sequence forms a protein that leads to a particular function and phenotype (trait) in an organism. Bio.3.1.3 • Understand that mutations are changes in DNA coding and can be deletions, additions, or substitutions. Mutations can be random and spontaneous or caused by radiation and/or chemical exposure. • Develop a cause and effect model in order to describe how mutations: changing amino acid sequence, protein function, phenotype. Only mutations in sex cells (egg and sperm) or in the gamete produced from the primary sex cells can result in heritable changes. Bio.3.2.2 • Interpret Punnett squares (monohybrid only) to determine genotypic and phenotypic ratios. Understand that dominant alleles mask recessive alleles. • Determine parental genotypes based on offspring ratios. • Interpret karyotypes (gender, and chromosomal abnormalities). • Recognize a variety of intermediate patterns of inheritance (codominance and incomplete dominance). • Recognize that some traits are controlled by more than one pair of genes and that this pattern of inheritance is identified by the presence of a wide range of phenotypes (skin, hair, and eye color). • Interpret autosomal inheritance patterns: sickle cell anemia including the relationship to malaria (incomplete dominance), cystic fibrosis (recessive heredity), and Huntington’s disease (dominant heredity). • Solve and interpret codominant crosses involving multiple alleles including blood typing problems. (Blood Types: A, B, AB and O and Alleles: IA, IB, and i). Students should be able to determine if parentage is possible based on blood types. Moore/ Nash Review Packet 20 • Understand human sex chromosomes and interpret crosses involving sex-linked traits (colorblindness and hemophilia). Students should understand why males are more likely to express a sexlinked trait. • Interpret phenotype pedigrees to identify the genotypes of individuals and the type of inheritance. Bio.3.3.1 • Summarize the process of gel electrophoresis as a technique to separate molecules based on size. Students should learn the general steps of gel electrophoresis – using restrictions enzymes to cut DNA into different sized fragments and running those fragments on gels with longer fragments moving slower than faster ones. • Interpret or “read” a gel. • Exemplify applications of DNA fingerprinting - identifying individuals; identifying and cataloging endangered species. Bio.3.3.2 • Generalize the applications of transgenic organisms (plants, animals, & bacteria) in agriculture and industry including pharmaceutical applications such as the production of human insulin. • Summarize the steps in bacterial transformation (insertion of a gene into a bacterial plasmid, getting bacteria to take in the plasmid, selecting the transformed bacteria, and producing the product). Bio.3.3.3 • Identify the reasons for establishing the Human Genome Project. • Recognize that the project is useful in determining whether individuals may carry genes for genetic conditions and in developing gene therapy. • Evaluate some of the science of gene therapy. (e.g. Severe Combined Immunodeficiency and Cystic Fibrosis) • Critique the ethical issues and implications of genomics and biotechnology (stem cell research, gene therapy and genetically modified organisms). Sample Questions: If a strand of DNA is CTGCAT, what is the sequence of nucleotides in the complementary strand? a. GACGTA b. CTGCAT c. AGTACG d. GACGUA Which of the following changes in DNA is likely to have the greatest effect on the resulting peptide? a. in a strand of DNA, one C is changed to a T b. a “G” is inserted at the beginning of a gene c. a “G” is inserted at the end of a gene d. in a strand of DNA, one T is changed to a C A parent with Type A blood and a parent with Type O blood have a child. Which of the following is a possible genotype of their offspring? a. IAIA b. IAIB c. IBi d. ii Moore/ Nash Review Packet 21 Dominant- traits that express themselves; hide the recessive trait; only requires one allele to be expressed (B) Recessive- traits that are hidden by the dominant; to be expressed it must be homozygous (have two recessive alleles) (bb) Allele- alternate forms of a gene Genotype- the genetic make up of an individual (letters) Phenotype- the physical appearance Purebred (true breeding)- will produce identical copies of self (homozygous) Hybrid/carrier- will not produce identical copies of self (heterozygous) Incomplete dominance- shows in the middle Codominance- both alleles have equal power (co-captain/costar) Incomplete dominance Codominance Polygenetic inheritance- traits controlled by more than one section of DNA; provides a wide variety of characteristics (ex- hair color, skin color, eye color, height) Sex-linked traits- traits that are linked to the “X” chromosomes (excolorblindness and hemophilia) males are XY; females are XX Test-Cross- used to determine the genotype of an organism; the unknown genotype is crossed with an individual that is homozygous recessive (bb) Independent assortment- alleles separate and end up in different gametes Example: B could match up with D or d Pedigree- graphic representation of genetic inheritance used to map genetic traits Phenotypic pedigree Example: 1 and 2 are both carriers (heterozygous) Moore/ Nash Review Packet 22 Karyotype- chromosomal chart used for sex determination and chromosomal mutations This is an example of a female with Down Syndrome Multiple alleles- traits that are governed by more than 2 alleles (ex- blood type) Blood Type Genotype Can receive blood from: i=O A B AB O IA IA IA i IB IB IB i IA IB ii AA AO BB BO AB OO A or O B or O A, B, AB, O O Genetic Engineering- genetically altering DNA for mass producing human products DNA Fingerprinting!!! Gel electrophoresis- separates DNA segments based on size by running an electrical current through them; used to compare unknown DNA with known samples Example: Crime DNA matches up with suspect 2 Moore/ Nash Review Packet 23 Is often used to make the super crop, or live stock!!!!!! Moore/ Nash Review Packet 24 How we make (mass produce) Insulin!! Example of Gene Therapy!! Moore/ Nash Review Packet 25 Central Dogmao The path information travels… from DNA to mRNA to proteins… also referred to as the central dogma of biology. It is used by all organisms and accounts for the wonder of life. DNA Replication: 1. An Enzyme breaks apart the weak hydrogen bonds holding nitrogen bases together; “unzipping” the molecule. 2. Free nucleotides bond to the single strands (using base paring rules) 3. Each new molecule has one original strand and one new strand White = original strand Black = new strand DNA is semi-conservative because each new molecule has one original strand and one newly formed strand Moore/ Nash Review Packet 26 Protein Synthesis o Transcription (DNA to RNA) Occurs in the nucleus DNA unzips; free nucleotides pair up with the strand(using RNA base paring rules) creating a strand of (messenger) mRNA mRNA then travels from the nucleus to the cytoplasm - RNA: -single strand - U instead of T o Translation (RNA to Protein) Occurs in cytoplasm (transfer) tRNA brings amino acids to the ribosomes Codons on mRNA join with anticodons on tRNA each coding for one of 20 different amino acids As amino acids are coded for they are joined together by peptide bonds This process continues until a STOP codon is reached on the mRNA strand Moore/ Nash Review Packet 27 Protein synthesis--entire process - 20 Amino Acids listed - Rules: * Use left side first * Use top second * Use right side third - Used for translation Moore/ Nash Review Packet 28 Mutations o A mutation is any mistake or change in the DNA sequence; caused by mutagen; example- UV radiation causes skin cancer Point mutations A change in a single base pair of DNA Frameshift mutations A single base is added or deleted from DNA Chromosomal mutations Deletions- when part of a chromosome is left out Insertions- when part of a chromatid breaks off and attached to its sister chromatid Inversions- when part of a chromosome breaks out and is reinserted backwards Translocations- when one part of a chromosome breaks off and is added to a different chromosome Moore/ Nash Review Packet 29 Nondisjunction The failure of homologous chromosomes to separate properly during meiosis o Trisomy- having an extra chromosome Trisomy 21- Down Syndrome o Triploidy- having 3 sets of chromosomes o Monosomy- having only 1 chromosome Typically fatal Evolution o The change in populations over a period of time o Charles Darwin was the first scientist to support the idea of gradual change in species over time due to natural selection Natural selection- explains how populations evolve; changes in populations occur when organisms with favorable variations for a particular environment survive, reproduce, and pass on these variations to the next generation (“survival of the fittest”) o Early life started with prokaryotic cells going through anaerobic cellular respiration because of no pure oxygen o The Theory of Evolution, based on fossil records, DNA comparison and structural similarities, proves Common Ancestry o Support for theory of evolution: 1. Fossil Record Absolute dating Relative dating Age determined by other Age determined by organisms found carbon dating 2. Analogous structures- body parts that do not have common evolutionary origin but are similar in function (ex. bird’s wings and butterfly’s wings) 3. Homologous structures- structures that are similar in arrangement, function or both; show a common evolutionary origin Moore/ Nash Review Packet 30 4. Vestigial structures- body structure that has no function in present day organism but was probably of use to an ancestor Example: free floating hip bone, in whales, is no longer needed 5. Embryological similarities- proof of common ancestry by similar characteristics at conception and throughout early development o Artificial selection- breeding of organisms selected for specific traits in order to produce offspring with those desired characteristics o Adaptation- a variation that allows an organism to survive o Mimicry- a structural adaptation that enables a species to resemble another species o Camouflage- blending in with the environment o Geographic Isolation- as an organism’s environment changes- those best suited for the environment will survive Example: Population X- would favor similar characteristics as mainland Populations Y & Z- would favor those organisms that had genetic mutations allowing them to survive in different environments DIAGRAM KEY: Population X- change the least Population Y- slight changes Population Z- change the most Moore/ Nash Review Packet 31 Bio.3.4.1 • Summarize the hypothesized early atmosphere and experiments that suggest how the first “cells” may have evolved and how early conditions affected the type of organism that developed (first anaerobic and prokaryotic, then photosynthetic, then eukaryotic, then multicellular). • Summarize how fossil evidence informs our understanding of the evolution of species and what can be inferred from this evidence. • Generalize what biochemical (molecular) similarities tell us about evolution. • Generalize what shared anatomical structures (homologies) tell us about evolution. Bio.3.4.2 • Develop a cause and effect model for the process of natural selection: c recombination. etic phenotypes. ange in favored alleles leads to changes in species over time. • Illustrate the role of geographic isolation in speciation. Bio.3.4.3 Develop a cause and effect model for the role of disease agents in natural selection including evolutionary selection of resistance to antibiotics and pesticides in various species, passive/active immunity, antivirals and vaccines. Sample Questions: Species A and B share similarities in DNA sequences. What would this suggest about their evolutionary relationship? a. Species A developed before species B. b. Species A and B share a recent common ancestor. c. Species A and B are unrelated. d. Species B developed before Species A. During the Industrial Revolution, there were two variations of English Peppered Moths, those with light color and those with dark color. The soot from the factories covered the trees. Data was collected to measure the percentage of each type of moth in the area. It was noted that the percentage of dark-colored moths increased over time, while the percentage of light-colored moths decreased. What is the likely explanation for this change? a. The presence of a mutation changed the color of the English Peppered Moths. b. The presence of the dark-colored variation increased the likelihood for survival of the English Peppered Moths. c. The presence of the light-colored variation increased the likelihood for survival of the English Peppered Moths. d. The presence of an acquired trait changed the color of the English Peppered Moths. A researcher sprays a new pesticide on thousands of insects of the same species that live in a large field. A few of the insects survive. What can be concluded by the researcher? a. The species of insects will likely become resistant to the pesticide. b. The ideal interval between the first and second applications of the pesticide should be increased. c. The pesticide has no effect on the species. d. The concentration of the pesticide was too weak. Moore/ Nash Review Packet 32 Classification o Taxonomy- the branch of biology that groups and names organisms based on studies of their shared characteristics o Originally developed under a 2 kingdom system- plants and animals; now 6 o Taxonomic levels “King Philip Came Over For Great Spaghetti” Kingdom Phylum Class Order Family Genus Species o 6 Kingdoms: Archaebacteria- autotrophic bacteria; live in harsh environments; have prokaryotic cells; unicellular Eubacteria- heterotrophic- autotrophic; unicellular; prokaryotes Protist- may be auto- or heterotrophic; diverse; multicellular or unicellular; eukaryotes; live in moist environments; lack complex organ systems Fungi- all heterotrophic; can be uni- or multicellular; eukaryotes that do not move from place to place; have cell wall; decomposers Plants- autotrophic; multicellular; eukaryotes Animals- heterotrophic; multicellular; eukaryotes o Binomial nomenclature- two name system of naming an organism Developed by Carolus Linnaeus EX: Genus and species of organism used in scientific name Homo sapiens Genus is capitalized and species is lower case Both names are either italicized or underlined Rules for Dichotomous Keys: 1. Always start with number 1 2. Follow direction at end of line Ex: Bird X= Platyspiza Moore/ Nash Review Packet 33 Bio.3.5.1 • Generalize the changing nature of classification based on new knowledge generated by research on evolutionary relationships and the history of classification system. Bio.3.5.2 • Classify organisms using a dichotomous key. • Compare organisms on a phylogenetic tree in terms of relatedness and time of appearance in geologic history. Moore/ Nash Review Packet 34 Behavior o Behavior- anything an animal (or plant) does in response to a stimulus o Stimulus- an environmental change that directly influences the activity of an organism o Innate behavior- behavior that is inherited o Automatic response Reflex- simplest form of innate behavior; involves no conscious control Fight or flight- mobilizes the body into a greater action Instinctive behavior- begins when an animal recognizes a stimulus and continues response until all parts of a behavior are complete (ex: suckling) o Courtship/territorial behavior (ex: courtship dances) Pheromones- chemicals that communicate information among individuals of the same species Aggressive behavior- used to intimidate another animal of the same species (ex: fighting fish) Dominance hierarchy- form of ranking in which some individuals are more subordinate (submissive) than others o Behavioral clues Circadian rhythm- 24 hour clock Migration- seasonal Hibernation- an extreme conservation of energy including body temperature dropping Estivation- reduced metabolisms in cases where heat and drought conditions exist o Learned behaviors Habituation- occurs when animals are repeatedly given a stimuli that is not associated with any reward or punishment; animal becomes habituated to stimuli when it stops responding to the stimuli Imprinting- animal forming an attachment to another object; takes place only during a specific period of time during an individual’s life Motivation- an internal need that causes an animal to act Insight- learning in which an animal uses previous experience to respond to a new situation Classical conditioning- the process of learning by association; famous example is Pavlov’s dogs Moore/ Nash Review Packet 35 Plants Gymnosperms vs. angiosperms Vascular plants (have roots, stems, leaves) Vascular (have roots, stems, leaves) Produce seeds in cones Flowering plants Keep leaves all year long (evergreen) Produce seeds inside fruits Ex- cone-bearer (pine, spruce, fir) Deciduous plants- lose leaves every fall Thrive in harsh conditions Produce seeds with cotyledon- provides plant embryo with food while maturing Do NOT lose much water (hold on to it) Ex- dicots and monocots Dicots Monocots - two cotyledons (seed leaves) present - one cotyledon (seed leaf) present - has primary taproot that branches off - has a fibrous root system - has 3 pored pollen - has single pore pollen - has ring shaped vascular system in stem - has bundled vascular system in stem - leaves have a netvein system - leaves have parallel veins; - 4 or 5 part flowers - three part flowers Example test question: What is plant 1? Answer: Gymnosperm Moore/ Nash Review Packet 36 Openings- stomata- with guard cells on either side; control how big the hole is (how much water/gas enters and leaves) Has male and female parts; male parts generally located on outside of flower; female parts generally located on inside of flower and often flowers are colorful to draw insects in to help spread gametes Vascular tissue: - xylem- water and minerals up from soil - phloem- allows glucose and carbon dioxide to travel to rest of plant Primary growth of plant occurs at root tip Moore/ Nash Review Packet 37 Bio.2.1.1 • Deconstruct the carbon cycle as it relates to photosynthesis, cellular respiration, decomposition and climate change. • Summarize the nitrogen cycle (including the role of nitrogen fixing bacteria) and its importance to synthesis of proteins and DNA. • Identify factors that influence climate such as: ) ntal processes (relate to volcanic eruption and other geological processes) • Explain the recycling of matter within ecosystems and the tendency toward a more disorganized state. • Analyze energy pyramids for direction and efficiency of energy transfer. Living systems require a continuous input of energy to maintain organization. The input of radiant energy which is converted to chemical energy allows organisms to carry out life processes. n through producers and consumers as chemical energy that is ultimately transformed into heat energy. Continual refueling of radiant energy is required by ecosystems. Bio 2.1.2 • Analyze how various organisms accomplish the following life functions through adaptations within particular environments (example: water or land) and that these adaptations have evolved to ensure survival and reproductive success. – how different organisms get what they need to cells; how they move waste from cells to organs of excretion. Focus is on maintaining balance in pH, salt, and water. Include plants - vascular and nonvascular. – how different organisms take in and release gases (carbon dioxide or oxygen, water vapor); cellular respiration – feeding adaptations and how organisms get nutrition (autotrophic and heterotrophic) and how they break down and absorb foods. ction, Growth and Development – sexual versus asexual, eggs, seeds, spores, placental, types of fertilization. • Analyze behavioral adaptations that help accomplish basic life functions such as suckling, taxes/taxis, migration, estivation, and hibernation, habituation, imprinting, classical conditioning (e.g. Pavlov’s dog–stimulus association), and trial and error learning. Bio 2.1.3 • Identify and describe symbiotic relationships such as mutualism and parasitism. (middle school review) • Exemplify various forms of communication and territorial defense including communication within social structure using pheromones (Examples: bees, ants, termites), courtship dances, territorial defense (Example: fighting fish). • Explain patterns in predator /prey and competition relationships and how these patterns help maintain stability within an ecosystem with a focus on population dynamics. Note: There is much debate about whether commensalistic relationships are just early mutualism. We may just not understand the benefits to each organism. Bio.2.1.4 • Generalizing that although some populations have the capacity for exponential growth, there are limited resources that create specific carrying capacities and population sizes are in a dynamic equilibrium with these factors. (e.g. food availability, climate, water, territory). • Interpret various types of population graphs – human population growth graphs indicating historical and potential changes, factors influencing birth rates and death rates, and effects of population size, density and resource use on the environment. • Explain how disease can disrupt ecosystem balance. (Examples: AIDS, influenza, tuberculosis, Dutch Elm Disease, Pfiesteria, etc.) Moore/ Nash Review Packet 38 Bio.2.2.1 • Summarize how humans modify ecosystems through population growth, technology, consumption of resources and production of waste. • Interpret data regarding the historical and predicted impact on ecosystems and global climate. • Explain factors that impact North Carolina ecosystems. (Examples: acid rain effects in mountains, beach erosion, urban development in the Piedmont leading to habitat destruction and water runoff, waste lagoons on hog farms, Kudzu as an invasive plant, etc.). Bio.2.2.2 • Explain the impact of humans on natural resources (e.g. resource depletion, deforestation, pesticide use and bioaccumulation ) • Exemplify conservation methods and stewardship. Sample Questions: The different species of Hawaiian honeycreepers shown all descended from a single species of North American bird. They now have different beaks, eat different foods, sing different songs, and live in different environments on the islands. Which factor probably contributed most to the development of these different species? a. Loss of habitat b. Geographic isolation c. Egg size d. Predation Classify the relationship between flowering plants and bees, where the plant provides the bee with food and the bee spreads pollen for the plant. a. commensalism b. mutualism c. parasitism d. predation Which of the following has contributed most to the overall warming of the earth’s atmosphere? a. the burning of fossil fuels b. the depletion of the ozone c. the occurrence of acid rain d. the melting of the polar ice caps Moore/ Nash Review Packet 39 Ecology o Organism- a living thing that has the 5 characteristics of life o Species- a group of organisms capable of interbreeding and producing fertile offspring o Populations- a group of related species within a defined area o Community- all of the populations in a given area o Ecosystem- all of the biotic and abiotic factors in a given area o Biosphere- life-supporting portions of Earth composed of air, land, fresh and salt water o Population growth J-shaped curve- a prediction of population size without environmental disturbance S-shaped curve- a prediction of population size with environmental disturbance Example: Carrying capacity- number of organisms of one species that an area can support Limiting factors: anything that keeps a population from uncontrollably growing; example: competition over food, space, water, shelter o Symbiotic relationships Mutualism- both organisms living in close relation benefit Parasitism- one organism benefits and the other is harmed Commensalism- one organism benefits and the other is neither helped nor harmed Moore/ Nash Review Packet 40 o Food web- a model that shows all the possible feeding relationships at each trophic level in a community Producers- autotrophic (make their own food) Primary consumers- heterotrophic; consume producers (herbivores) Secondary consumers- consume the herbivores (carnivores) or consume herbivores and producers (omnivores) Decomposers- break down dead organisms (bacteria and fungi) o Energy pyramid- represents the flow of energy through an ecosystem. The producers are on the bottom trophic level (they provide the greatest amount of energy) **More energy and greater population size at bottom decreases as you move up o Human impact- climate change; example – greenhouse effect (increasing atmospheric carbon through the use of Fossil Fuels). Polar ice caps melting (sea levels rise and plants and animals lose habitat). Habitat loss (deforestation) #1 threat to balance globally!!! Moore/ Nash Review Packet 41 Moore/ Nash Review Packet 42 Scientific Method o Hypothesis- a proposed solution to a problem o Theory- an explanation of natural phenomenon supported by a large body of scientific evidence obtained from many observations o Scientific law- a statement about what happens in nature that seems to be true all the time; does not explain why or how o Independent variable- on the x-axis; is changed or manipulated by the experimenter o Dependent variable- on the y-axis; is changed or influenced by the changes that occur with the independent variable o Control- standard that is used for comparison of test results in an experiment o Constant- in an experiment, a variable that does not change when other variables change o Quantitative data- deals with numbers; can be measured (ex- height, length, weight, temperature) o Qualitative data- deals with descriptions; can be observed but not measured (ex- texture, smell, taste, color) Title; Dependent vs. Independent Dependent variable * Numbers evenly spaced * Continuous information= line graph * grouped (chunked) information= bar graph axis Independent variable Y axis X Total magnification = eyepiece x objective Example- 40 x 10 = 400